RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 ITPK1Q13572 414 aa20.18■□□□□ 0.82
SMPD4-216ENST00000461187 ATG3Q9NT62 314 aa20.18■□□□□ 0.82
SMPD4-216ENST00000461187 CD2APQ9Y5K6 639 aa20.18■□□□□ 0.82
SMPD4-216ENST00000461187 SSFA2P28290 1259 aa20.17■□□□□ 0.82
SMPD4-216ENST00000461187 ATP6V1AP38606 617 aa20.16■□□□□ 0.82
SMPD4-216ENST00000461187 GRIN3BO60391 1043 aa20.15■□□□□ 0.82
SMPD4-216ENST00000461187 MORC1Q86VD1 984 aa20.15■□□□□ 0.82
SMPD4-216ENST00000461187 KDRP35968 1356 aa20.15■□□□□ 0.82
SMPD4-216ENST00000461187 C4AP0C0L4 1744 aa20.14■□□□□ 0.81
SMPD4-216ENST00000461187 KDM6AO15550 1401 aaPredicted RBP20.14■□□□□ 0.81
SMPD4-216ENST00000461187 ERVV-2B6SEH9 535 aa20.14■□□□□ 0.81
SMPD4-216ENST00000461187 PLEKHO1Q53GL0 409 aaPredicted RBP20.14■□□□□ 0.81
SMPD4-216ENST00000461187 N4BP2Q86UW6 1770 aaPredicted RBP20.13■□□□□ 0.81
SMPD4-216ENST00000461187 GNPATO15228 680 aa20.13■□□□□ 0.81
SMPD4-216ENST00000461187 HSP90AB1P08238 724 aaKnown RBP20.13■□□□□ 0.81
SMPD4-216ENST00000461187 DCAF5Q96JK2 942 aa20.13■□□□□ 0.81
SMPD4-216ENST00000461187 KIAA1551Q9HCM1 1747 aa20.13■□□□□ 0.81
SMPD4-216ENST00000461187 AEBP1Q8IUX7 1158 aa20.12■□□□□ 0.81
SMPD4-216ENST00000461187 SLC4A9Q96Q91 983 aa20.12■□□□□ 0.81
SMPD4-216ENST00000461187 AMOTQ4VCS5 1084 aa20.11■□□□□ 0.81
SMPD4-216ENST00000461187 ZNF530Q6P9A1 599 aaPredicted RBP20.11■□□□□ 0.81
SMPD4-216ENST00000461187 KNSTRNQ9Y448 316 aa20.11■□□□□ 0.81
SMPD4-216ENST00000461187 TJP1Q07157 1748 aa20.1■□□□□ 0.81
SMPD4-216ENST00000461187 BRCA1P38398 1863 aaKnown RBP20.1■□□□□ 0.81
SMPD4-216ENST00000461187 CICQ96RK0 1608 aaPredicted RBP20.09■□□□□ 0.81
SMPD4-216ENST00000461187 C1QTNF8P60827 252 aa20.09■□□□□ 0.81
SMPD4-216ENST00000461187 RBM42Q9BTD8 480 aaKnown RBP20.09■□□□□ 0.81
SMPD4-216ENST00000461187 IL13P35225 146 aa20.08■□□□□ 0.81
SMPD4-216ENST00000461187 AMER1Q5JTC6 1135 aaPredicted RBP20.08■□□□□ 0.81
SMPD4-216ENST00000461187 SULT6B1Q6IMI4 303 aa20.08■□□□□ 0.81
SMPD4-216ENST00000461187 CABP4P57796 275 aa20.07■□□□□ 0.8
SMPD4-216ENST00000461187 KIF7Q2M1P5 1343 aa20.06■□□□□ 0.8
SMPD4-216ENST00000461187 MTHFSP49914 203 aa20.06■□□□□ 0.8
SMPD4-216ENST00000461187 C1orf141Q5JVX7 400 aa20.06■□□□□ 0.8
SMPD4-216ENST00000461187 RC3H1Q5TC82 1133 aaKnown RBP20.06■□□□□ 0.8
SMPD4-216ENST00000461187 RTCBQ9Y3I0 505 aaKnown RBP20.06■□□□□ 0.8
SMPD4-216ENST00000461187 CNTNAP4Q9C0A0 1308 aa20.05■□□□□ 0.8
SMPD4-216ENST00000461187 TRAPPC3LQ5T215 181 aa20.05■□□□□ 0.8
SMPD4-216ENST00000461187 GIGYF1O75420 1035 aaPredicted RBP20.04■□□□□ 0.8
SMPD4-216ENST00000461187 MMP10P09238 476 aa20.04■□□□□ 0.8
SMPD4-216ENST00000461187 ADRA2BP18089 450 aa20.03■□□□□ 0.8
SMPD4-216ENST00000461187 NFATC2IPQ8NCF5 419 aa20.03■□□□□ 0.8
SMPD4-216ENST00000461187 ARHGEF1Q92888 912 aaKnown RBP20.03■□□□□ 0.8
SMPD4-216ENST00000461187 ADAMTS7Q9UKP4 1686 aa20.03■□□□□ 0.8
SMPD4-216ENST00000461187 ATP10DQ9P241 1426 aa20.02■□□□□ 0.8
SMPD4-216ENST00000461187 ARFGEF1Q9Y6D6 1849 aa20.02■□□□□ 0.8
SMPD4-216ENST00000461187 RPS6KA4O75676 772 aa20.02■□□□□ 0.8
SMPD4-216ENST00000461187 WWC3Q9ULE0 1092 aa20.02■□□□□ 0.8
SMPD4-216ENST00000461187 ADCY9O60503 1353 aa20.01■□□□□ 0.79
SMPD4-216ENST00000461187 SENP3-EIF4A1A0A087X0R7 540 aa20.01■□□□□ 0.79
SMPD4-216ENST00000461187 PTCD1O75127 700 aaKnown RBP20.01■□□□□ 0.79
SMPD4-216ENST00000461187 NLGN1Q8N2Q7 840 aa20.01■□□□□ 0.79
SMPD4-216ENST00000461187 PXDNLA1KZ92 1463 aa20■□□□□ 0.79
SMPD4-216ENST00000461187 PER1O15534 1290 aaPredicted RBP20■□□□□ 0.79
SMPD4-216ENST00000461187 UBR2Q8IWV8 1755 aa19.99■□□□□ 0.79
SMPD4-216ENST00000461187 GYS1P13807 737 aa19.99■□□□□ 0.79
SMPD4-216ENST00000461187 AKAP4Q5JQC9 854 aa19.99■□□□□ 0.79
SMPD4-216ENST00000461187 MRC1P22897 1456 aa19.99■□□□□ 0.79
SMPD4-216ENST00000461187 AFDNP55196 1824 aaKnown RBP19.98■□□□□ 0.79
SMPD4-216ENST00000461187 RFC4P35249 363 aa19.98■□□□□ 0.79
SMPD4-216ENST00000461187 CRKLP46109 303 aaKnown RBP19.98■□□□□ 0.79
SMPD4-216ENST00000461187 C10orf71Q711Q0 1435 aa19.98■□□□□ 0.79
SMPD4-216ENST00000461187 HMOX1P09601 288 aa19.96■□□□□ 0.79
SMPD4-216ENST00000461187 TGFB2P61812 414 aa19.96■□□□□ 0.79
SMPD4-216ENST00000461187 LGR6Q9HBX8 967 aa19.96■□□□□ 0.79
SMPD4-216ENST00000461187 SIPA1L3O60292 1781 aaPredicted RBP19.95■□□□□ 0.78
SMPD4-216ENST00000461187 CC2D1BQ5T0F9 858 aaKnown RBP19.95■□□□□ 0.78
SMPD4-216ENST00000461187 SLC52A2Q9HAB3 445 aa19.95■□□□□ 0.78
SMPD4-216ENST00000461187 CEP350Q5VT06 3117 aa19.95■□□□□ 0.78
SMPD4-216ENST00000461187 SBF1O95248 1867 aa19.94■□□□□ 0.78
SMPD4-216ENST00000461187 CCDC87Q9NVE4 849 aa19.94■□□□□ 0.78
SMPD4-216ENST00000461187 COL3A1P02461 1466 aaPredicted RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 KCPQ6ZWJ8 1503 aa19.93■□□□□ 0.78
SMPD4-216ENST00000461187 A0A0G2JLW4 131 aa19.93■□□□□ 0.78
SMPD4-216ENST00000461187 RNMTO43148 476 aaKnown RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 DIAPH1O60610 1272 aaKnown RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 INTS5Q6P9B9 1019 aaKnown RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 GPBP1L1Q9HC44 474 aaPredicted RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 SRP68Q9UHB9 627 aaKnown RBP19.93■□□□□ 0.78
SMPD4-216ENST00000461187 PARP3Q9Y6F1 533 aa19.93■□□□□ 0.78
SMPD4-216ENST00000461187 MTHFSDQ2M296 383 aaKnown RBP19.92■□□□□ 0.78
SMPD4-216ENST00000461187 USP42Q9H9J4 1324 aaKnown RBP19.92■□□□□ 0.78
SMPD4-216ENST00000461187 NPC1L1Q9UHC9 1359 aa19.92■□□□□ 0.78
SMPD4-216ENST00000461187 FKBP8Q14318 412 aa19.91■□□□□ 0.78
SMPD4-216ENST00000461187 DNAJC10Q8IXB1 793 aa19.91■□□□□ 0.78
SMPD4-216ENST00000461187 DPEP1P16444 411 aa19.9■□□□□ 0.78
SMPD4-216ENST00000461187 SLC39A6Q13433 755 aa19.9■□□□□ 0.78
SMPD4-216ENST00000461187 ZNF526Q8TF50 670 aaPredicted RBP19.9■□□□□ 0.78
SMPD4-216ENST00000461187 BCS1LQ9Y276 419 aa19.9■□□□□ 0.78
SMPD4-216ENST00000461187 NRXN2Q9P2S2 1712 aa19.9■□□□□ 0.78
SMPD4-216ENST00000461187 CCDC88AQ3V6T2 1871 aa19.9■□□□□ 0.78
SMPD4-216ENST00000461187 DLEC1Q9Y238 1755 aa19.89■□□□□ 0.77
SMPD4-216ENST00000461187 CYP19A1P11511 503 aaPredicted RBP19.88■□□□□ 0.77
SMPD4-216ENST00000461187 KCNA3P22001 575 aa19.88■□□□□ 0.77
SMPD4-216ENST00000461187 DDR1Q08345 913 aa19.88■□□□□ 0.77
SMPD4-216ENST00000461187 SOS1Q07889 1333 aaPredicted RBP19.87■□□□□ 0.77
SMPD4-216ENST00000461187 TM4SF1P30408 202 aa19.86■□□□□ 0.77
SMPD4-216ENST00000461187 FCHSD2O94868 740 aa19.85■□□□□ 0.77
SMPD4-216ENST00000461187 CNGB1Q14028 1251 aaPredicted RBP19.85■□□□□ 0.77
SMPD4-216ENST00000461187 POLRMTO00411 1230 aaKnown RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms