RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PHF14O94880 888 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 KIAA2012Q0VF49 1180 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 FAM182BQ5T319 152 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 ARAP3Q8WWN8 1544 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 CEP85Q6P2H3 762 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 METP08581 1390 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 PI4KAP2A4QPH2 592 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 PLEKHM2Q8IWE5 1019 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 PI4KAP1Q8N8J0 262 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 NPHP4O75161 1426 aaPredicted RBP14.04□□□□□ -0.16
NPHP4-204ENST00000460696 ABCC3O15438 1527 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 MCM2P49736 904 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 CWC22Q9HCG8 908 aaKnown RBP14.04□□□□□ -0.16
NPHP4-204ENST00000460696 BTG4Q9NY30 223 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 KCNH5Q8NCM2 988 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 ACSBG1Q96GR2 724 aa14.04□□□□□ -0.16
NPHP4-204ENST00000460696 H3BQV1 296 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 TATP17735 454 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-204ENST00000460696 CSPP1Q1MSJ5 1256 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 NCBP3Q53F19 620 aaKnown RBP14.03□□□□□ -0.16
NPHP4-204ENST00000460696 IFFO2Q5TF58 517 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 AACSQ86V21 672 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 PTPRMP28827 1452 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 TTC21AQ8NDW8 1320 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 RNF20Q5VTR2 975 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 PPP1R42Q7Z4L9 355 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 FAM184AQ8NB25 1140 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 DNAAF4Q8WXU2 420 aa14.03□□□□□ -0.16
NPHP4-204ENST00000460696 LARP6Q9BRS8 491 aaKnown RBP14.03□□□□□ -0.16
NPHP4-204ENST00000460696 ANO8Q9HCE9 1232 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-204ENST00000460696 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.02□□□□□ -0.16
NPHP4-204ENST00000460696 PTCD1O75127 700 aaKnown RBP14.02□□□□□ -0.16
NPHP4-204ENST00000460696 HECW2Q9P2P5 1572 aa14.02□□□□□ -0.16
NPHP4-204ENST00000460696 ABCA6Q8N139 1617 aa14.02□□□□□ -0.16
NPHP4-204ENST00000460696 CHL1O00533 1208 aa14.02□□□□□ -0.17
NPHP4-204ENST00000460696 FOSBP53539 338 aa14.02□□□□□ -0.17
NPHP4-204ENST00000460696 PDE1AP54750 535 aa14.02□□□□□ -0.17
NPHP4-204ENST00000460696 KIF1BPQ96EK5 621 aa14.02□□□□□ -0.17
NPHP4-204ENST00000460696 DNAJC2Q99543 621 aaKnown RBP14.02□□□□□ -0.17
NPHP4-204ENST00000460696 FIBPO43427 364 aa14.01□□□□□ -0.17
NPHP4-204ENST00000460696 FLT4P35916 1363 aa14.01□□□□□ -0.17
NPHP4-204ENST00000460696 GNL2Q13823 731 aaKnown RBP14.01□□□□□ -0.17
NPHP4-204ENST00000460696 HSPA1LP34931 641 aa14□□□□□ -0.17
NPHP4-204ENST00000460696 FAM98CQ17RN3 349 aaKnown RBP13.99□□□□□ -0.17
NPHP4-204ENST00000460696 FAM43AQ8N2R8 423 aa13.99□□□□□ -0.17
NPHP4-204ENST00000460696 CHPF2Q9P2E5 772 aa13.99□□□□□ -0.17
NPHP4-204ENST00000460696 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.99□□□□□ -0.17
NPHP4-204ENST00000460696 HTATSF1O43719 755 aaKnown RBP13.99□□□□□ -0.17
NPHP4-204ENST00000460696 MPNDQ8N594 471 aa13.99□□□□□ -0.17
NPHP4-204ENST00000460696 PANK2Q9BZ23 570 aa13.99□□□□□ -0.17
NPHP4-204ENST00000460696 ERC1Q8IUD2 1116 aa13.99□□□□□ -0.17
NPHP4-204ENST00000460696 PHAXQ9H814 394 aaKnown RBP13.98□□□□□ -0.17
NPHP4-204ENST00000460696 SPG7Q9UQ90 795 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 BAG4O95429 457 aaKnown RBP13.98□□□□□ -0.17
NPHP4-204ENST00000460696 DBF4Q9UBU7 674 aaPredicted RBP13.98□□□□□ -0.17
NPHP4-204ENST00000460696 MBD3O95983 291 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 SNX21Q969T3 373 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 JAKMIP1Q96N16 626 aaKnown RBP13.98□□□□□ -0.17
NPHP4-204ENST00000460696 CCDC8Q9H0W5 538 aaPredicted RBP13.98□□□□□ -0.17
NPHP4-204ENST00000460696 USP21Q9UK80 565 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 CABP4P57796 275 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 TOMM22Q9NS69 142 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 LAMC1P11047 1609 aa13.98□□□□□ -0.17
NPHP4-204ENST00000460696 CEP152O94986 1710 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 HOXC9P31274 260 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 STK3Q13188 491 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 BOLA2Q9H3K6 86 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 MAP3K2Q9Y2U5 619 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 PRR36Q9H6K5 1346 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 EXOC5O00471 708 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 GCP02774 474 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 RBM25P49756 843 aaKnown RBP13.97□□□□□ -0.17
NPHP4-204ENST00000460696 JARID2Q92833 1246 aaPredicted RBP13.97□□□□□ -0.17
NPHP4-204ENST00000460696 CYP46A1Q9Y6A2 500 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 ABCA9Q8IUA7 1624 aa13.97□□□□□ -0.17
NPHP4-204ENST00000460696 GLRX3O76003 335 aaKnown RBP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 XRCC6P12956 609 aaKnown RBP eCLIP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 SF3A1Q15459 793 aaKnown RBP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 AMOTQ4VCS5 1084 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 BICD2Q8TD16 824 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 GDPD2Q9HCC8 539 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 CFAP74Q9C0B2 1584 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 PLEKHG3A1L390 1219 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 RAB11FIP3O75154 756 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 CASTP20810 708 aaKnown RBP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 ATP8B2P98198 1209 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 CHAF1AQ13111 956 aaPredicted RBP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 RHPN1Q8TCX5 695 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 BCL11BQ9C0K0 894 aaPredicted RBP13.96□□□□□ -0.17
NPHP4-204ENST00000460696 PIK3R4Q99570 1358 aa13.96□□□□□ -0.17
NPHP4-204ENST00000460696 PRPF40BQ6NWY9 871 aaKnown RBP13.95□□□□□ -0.18
NPHP4-204ENST00000460696 ANKRD24Q8TF21 1146 aa13.95□□□□□ -0.18
NPHP4-204ENST00000460696 PPRC1Q5VV67 1664 aaKnown RBP13.95□□□□□ -0.18
NPHP4-204ENST00000460696 ABCC4O15439 1325 aa13.95□□□□□ -0.18
NPHP4-204ENST00000460696 WDR33Q9C0J8 1336 aaKnown RBP13.95□□□□□ -0.18
NPHP4-204ENST00000460696 SYCE3A1L190 88 aa13.95□□□□□ -0.18
NPHP4-204ENST00000460696 ADGRB3O60242 1522 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 USP19O94966 1318 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 GLI2P10070 1586 aa13.94□□□□□ -0.18
NPHP4-204ENST00000460696 PSMA5P28066 241 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms