RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 KDM6AO15550 1401 aaPredicted RBP16.01■□□□□ 0.15
HDAC4-206ENST00000460235 SOS1Q07889 1333 aaPredicted RBP16■□□□□ 0.15
HDAC4-206ENST00000460235 ZNF521Q96K83 1311 aa16■□□□□ 0.15
HDAC4-206ENST00000460235 CHL1O00533 1208 aa16■□□□□ 0.15
HDAC4-206ENST00000460235 DLG5Q8TDM6 1919 aa16■□□□□ 0.15
HDAC4-206ENST00000460235 ACSBG1Q96GR2 724 aa15.99■□□□□ 0.15
HDAC4-206ENST00000460235 THUMPD2Q9BTF0 503 aaKnown RBP15.99■□□□□ 0.15
HDAC4-206ENST00000460235 SHANK3Q9BYB0 1731 aa15.99■□□□□ 0.15
HDAC4-206ENST00000460235 MRC1P22897 1456 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 SCN11AQ9UI33 1791 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 KAT6BQ8WYB5 2073 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 ZNF853P0CG23 659 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 ZNF790Q6PG37 636 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 PIGBQ92521 554 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 FMNL2Q96PY5 1086 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 TEX13AQ9BXU3 409 aaPredicted RBP15.98■□□□□ 0.15
HDAC4-206ENST00000460235 ADAMTS7Q9UKP4 1686 aa15.98■□□□□ 0.15
HDAC4-206ENST00000460235 CT47B1P0C2W7 299 aaPredicted RBP15.97■□□□□ 0.15
HDAC4-206ENST00000460235 SLFN5Q08AF3 891 aa15.97■□□□□ 0.15
HDAC4-206ENST00000460235 SENP3-EIF4A1A0A087X0R7 540 aa15.96■□□□□ 0.15
HDAC4-206ENST00000460235 TRIM37O94972 964 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 FAM182BQ5T319 152 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 VSIG10Q8N0Z9 540 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 ZNF428Q96B54 188 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 MBIPQ9NS73 344 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 BRWD3Q6RI45 1802 aa15.95■□□□□ 0.14
HDAC4-206ENST00000460235 HOXB7P09629 217 aa15.94■□□□□ 0.14
HDAC4-206ENST00000460235 KCNQ2O43526 872 aa15.93■□□□□ 0.14
HDAC4-206ENST00000460235 SNRPA1P09661 255 aaKnown RBP15.93■□□□□ 0.14
HDAC4-206ENST00000460235 BAG6P46379 1132 aa15.93■□□□□ 0.14
HDAC4-206ENST00000460235 ATG3Q9NT62 314 aa15.93■□□□□ 0.14
HDAC4-206ENST00000460235 PLSCR1O15162 318 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 STARD3NLO95772 234 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 APBA3O96018 575 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 SLC27A3Q5K4L6 730 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
HDAC4-206ENST00000460235 NHSQ6T4R5 1651 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 FANCIQ9NVI1 1328 aa15.92■□□□□ 0.14
HDAC4-206ENST00000460235 DOT1LQ8TEK3 1739 aa15.91■□□□□ 0.14
HDAC4-206ENST00000460235 PALLDQ8WX93 1383 aa15.91■□□□□ 0.14
HDAC4-206ENST00000460235 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-206ENST00000460235 EIF4A1P60842 406 aaKnown RBP15.91■□□□□ 0.14
HDAC4-206ENST00000460235 TRMT2AQ8IZ69 625 aaKnown RBP15.91■□□□□ 0.14
HDAC4-206ENST00000460235 MIS18AQ9NYP9 233 aa15.91■□□□□ 0.14
HDAC4-206ENST00000460235 ASAP1Q9ULH1 1129 aa15.91■□□□□ 0.14
HDAC4-206ENST00000460235 PTCD1O75127 700 aaKnown RBP15.9■□□□□ 0.14
HDAC4-206ENST00000460235 SLC39A6Q13433 755 aa15.9■□□□□ 0.14
HDAC4-206ENST00000460235 NPM2Q86SE8 214 aaKnown RBP15.9■□□□□ 0.14
HDAC4-206ENST00000460235 LOC102724428A0A0B4J2F2 783 aa15.89■□□□□ 0.13
HDAC4-206ENST00000460235 SIK1P57059 783 aa15.89■□□□□ 0.13
HDAC4-206ENST00000460235 TWISTNBQ3B726 338 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-206ENST00000460235 DUSP27Q5VZP5 1158 aa15.89■□□□□ 0.13
HDAC4-206ENST00000460235 TSR2Q969E8 191 aaKnown RBP15.89■□□□□ 0.13
HDAC4-206ENST00000460235 CDCA7LQ96GN5 454 aa15.89■□□□□ 0.13
HDAC4-206ENST00000460235 ZNF496Q96IT1 587 aaPredicted RBP15.89■□□□□ 0.13
HDAC4-206ENST00000460235 ITGB4P16144 1822 aa15.89■□□□□ 0.13
HDAC4-206ENST00000460235 VIRMAQ69YN4 1812 aaKnown RBP15.89■□□□□ 0.13
HDAC4-206ENST00000460235 HEG1Q9ULI3 1381 aa15.88■□□□□ 0.13
HDAC4-206ENST00000460235 ATP6V1AP38606 617 aa15.88■□□□□ 0.13
HDAC4-206ENST00000460235 CCDC30Q5VVM6 783 aa15.88■□□□□ 0.13
HDAC4-206ENST00000460235 STK31Q9BXU1 1019 aa15.88■□□□□ 0.13
HDAC4-206ENST00000460235 TOGARAM1Q9Y4F4 1720 aa15.88■□□□□ 0.13
HDAC4-206ENST00000460235 SIPA1L3O60292 1781 aaPredicted RBP15.87■□□□□ 0.13
HDAC4-206ENST00000460235 GIGYF1O75420 1035 aaPredicted RBP15.87■□□□□ 0.13
HDAC4-206ENST00000460235 EXOSC9Q06265 439 aaKnown RBP15.87■□□□□ 0.13
HDAC4-206ENST00000460235 CCNL1Q9UK58 526 aaPredicted RBP15.87■□□□□ 0.13
HDAC4-206ENST00000460235 ERBB4Q15303 1308 aa15.87■□□□□ 0.13
HDAC4-206ENST00000460235 SBF2Q86WG5 1849 aa15.87■□□□□ 0.13
HDAC4-206ENST00000460235 SPINK5Q9NQ38 1064 aaPredicted RBP15.86■□□□□ 0.13
HDAC4-206ENST00000460235 KCNQ3O43525 872 aa15.84■□□□□ 0.13
HDAC4-206ENST00000460235 ALDH1L2Q3SY69 923 aa15.84■□□□□ 0.13
HDAC4-206ENST00000460235 HDGFL1Q5TGJ6 251 aa15.84■□□□□ 0.13
HDAC4-206ENST00000460235 KDM3BQ7LBC6 1761 aa15.84■□□□□ 0.13
HDAC4-206ENST00000460235 BTAF1O14981 1849 aa15.83■□□□□ 0.12
HDAC4-206ENST00000460235 ELL2O00472 640 aaPredicted RBP15.83■□□□□ 0.12
HDAC4-206ENST00000460235 TXNRD1Q16881 649 aa15.83■□□□□ 0.12
HDAC4-206ENST00000460235 RC3H1Q5TC82 1133 aaKnown RBP15.83■□□□□ 0.12
HDAC4-206ENST00000460235 C8orf58Q8NAV2 365 aa15.83■□□□□ 0.12
HDAC4-206ENST00000460235 DBF4Q9UBU7 674 aaPredicted RBP15.83■□□□□ 0.12
HDAC4-206ENST00000460235 VAMP4O75379 141 aa15.82■□□□□ 0.12
HDAC4-206ENST00000460235 EIF2S2P20042 333 aaKnown RBP15.82■□□□□ 0.12
HDAC4-206ENST00000460235 PAPPAQ13219 1627 aa15.82■□□□□ 0.12
HDAC4-206ENST00000460235 KCPQ6ZWJ8 1503 aa15.81■□□□□ 0.12
HDAC4-206ENST00000460235 PTF1AQ7RTS3 328 aa15.81■□□□□ 0.12
HDAC4-206ENST00000460235 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.81■□□□□ 0.12
HDAC4-206ENST00000460235 HYPKQ9NX55 129 aa15.81■□□□□ 0.12
HDAC4-206ENST00000460235 ZNF831Q5JPB2 1677 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 A0A087WZG4 1122 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 IPO8O15397 1037 aaKnown RBP15.8■□□□□ 0.12
HDAC4-206ENST00000460235 NBPF14Q5TI25 921 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 DNAJC10Q8IXB1 793 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 CCDC87Q9NVE4 849 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 UBR2Q8IWV8 1755 aa15.8■□□□□ 0.12
HDAC4-206ENST00000460235 CNTNAP4Q9C0A0 1308 aa15.79■□□□□ 0.12
HDAC4-206ENST00000460235 CYP19A1P11511 503 aaPredicted RBP15.79■□□□□ 0.12
HDAC4-206ENST00000460235 TSPYL6Q8N831 410 aa15.79■□□□□ 0.12
HDAC4-206ENST00000460235 FLAD1Q8NFF5 587 aa15.79■□□□□ 0.12
HDAC4-206ENST00000460235 UPF1Q92900 1129 aaKnown RBP eCLIP15.79■□□□□ 0.12
HDAC4-206ENST00000460235 AK7Q96M32 723 aa15.79■□□□□ 0.12
HDAC4-206ENST00000460235 DDX21Q9NR30 783 aaKnown RBP eCLIP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms