RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 VAMP4O75379 141 aa13.16□□□□□ -0.3
HERC4-207ENST00000460168 AKAP4Q5JQC9 854 aa13.16□□□□□ -0.3
HERC4-207ENST00000460168 C8orf58Q8NAV2 365 aa13.16□□□□□ -0.3
HERC4-207ENST00000460168 TATP17735 454 aaPredicted RBP13.16□□□□□ -0.3
HERC4-207ENST00000460168 ZKSCAN2Q63HK3 967 aa13.16□□□□□ -0.3
HERC4-207ENST00000460168 KIF16BQ96L93 1317 aa13.16□□□□□ -0.3
HERC4-207ENST00000460168 COL5A2P05997 1499 aaPredicted RBP13.15□□□□□ -0.3
HERC4-207ENST00000460168 TOM1L2Q6ZVM7 507 aa13.15□□□□□ -0.3
HERC4-207ENST00000460168 WDR17Q8IZU2 1322 aa13.15□□□□□ -0.3
HERC4-207ENST00000460168 PANK1Q8TE04 598 aa13.15□□□□□ -0.3
HERC4-207ENST00000460168 PHLPP1O60346 1717 aa13.15□□□□□ -0.3
HERC4-207ENST00000460168 TMEM132AQ24JP5 1023 aa13.15□□□□□ -0.31
HERC4-207ENST00000460168 CLUAP1Q96AJ1 413 aa13.15□□□□□ -0.31
HERC4-207ENST00000460168 TAF7Q15545 349 aaPredicted RBP13.14□□□□□ -0.31
HERC4-207ENST00000460168 STRN4Q9NRL3 753 aa13.14□□□□□ -0.31
HERC4-207ENST00000460168 RNF216Q9NWF9 866 aaPredicted RBP13.14□□□□□ -0.31
HERC4-207ENST00000460168 CEMIPQ8WUJ3 1361 aa13.14□□□□□ -0.31
HERC4-207ENST00000460168 UBAP1LF5GYI3 381 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 EVA1CP58658 441 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 KRT24Q2M2I5 525 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 MPRIPQ6WCQ1 1025 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 FAM43AQ8N2R8 423 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 LGR6Q9HBX8 967 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 NOB1Q9ULX3 412 aaKnown RBP13.13□□□□□ -0.31
HERC4-207ENST00000460168 SPG7Q9UQ90 795 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 COG6Q9Y2V7 657 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 MEGF6O75095 1541 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 IPO8O15397 1037 aaKnown RBP13.13□□□□□ -0.31
HERC4-207ENST00000460168 MS4A1P11836 297 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 TEFQ10587 303 aa13.13□□□□□ -0.31
HERC4-207ENST00000460168 TRIM27P14373 513 aa13.12□□□□□ -0.31
HERC4-207ENST00000460168 ATF7IPQ6VMQ6 1270 aa13.12□□□□□ -0.31
HERC4-207ENST00000460168 TNNQ9UQP3 1299 aa13.12□□□□□ -0.31
HERC4-207ENST00000460168 COL16A1Q07092 1604 aaPredicted RBP13.12□□□□□ -0.31
HERC4-207ENST00000460168 COL22A1Q8NFW1 1626 aaPredicted RBP13.12□□□□□ -0.31
HERC4-207ENST00000460168 TCERG1O14776 1098 aaKnown RBP13.12□□□□□ -0.31
HERC4-207ENST00000460168 RLBP1P12271 317 aa13.12□□□□□ -0.31
HERC4-207ENST00000460168 NBR1Q14596 966 aa13.12□□□□□ -0.31
HERC4-207ENST00000460168 DZIP1LQ8IYY4 767 aaKnown RBP13.12□□□□□ -0.31
HERC4-207ENST00000460168 NOP58Q9Y2X3 529 aaKnown RBP13.12□□□□□ -0.31
HERC4-207ENST00000460168 NCLP19338 710 aaKnown RBP13.11□□□□□ -0.31
HERC4-207ENST00000460168 BABAM1Q9NWV8 329 aa13.11□□□□□ -0.31
HERC4-207ENST00000460168 BTG4Q9NY30 223 aa13.11□□□□□ -0.31
HERC4-207ENST00000460168 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.11□□□□□ -0.311e-7■■■□□ 18.5
HERC4-207ENST00000460168 RNMTO43148 476 aaKnown RBP13.11□□□□□ -0.31
HERC4-207ENST00000460168 BRPF1P55201 1214 aaPredicted RBP13.11□□□□□ -0.31
HERC4-207ENST00000460168 PLEKHG2Q9H7P9 1386 aa13.1□□□□□ -0.31
HERC4-207ENST00000460168 VIRMAQ69YN4 1812 aaKnown RBP13.1□□□□□ -0.31
HERC4-207ENST00000460168 LARP1Q6PKG0 1096 aaKnown RBP13.1□□□□□ -0.31
HERC4-207ENST00000460168 MRPL50Q8N5N7 158 aaKnown RBP13.1□□□□□ -0.31
HERC4-207ENST00000460168 CARD10Q9BWT7 1032 aa13.09□□□□□ -0.31
HERC4-207ENST00000460168 OVOS2A0A0G2JMS6 1433 aa13.09□□□□□ -0.31
HERC4-207ENST00000460168 COL14A1Q05707 1796 aaKnown RBP13.09□□□□□ -0.31
HERC4-207ENST00000460168 IFNL2Q8IZJ0 200 aa13.09□□□□□ -0.31
HERC4-207ENST00000460168 USP35Q9P2H5 1018 aa13.09□□□□□ -0.31
HERC4-207ENST00000460168 PARP4Q9UKK3 1724 aaKnown RBP13.08□□□□□ -0.32
HERC4-207ENST00000460168 BTBD11A6QL63 1104 aa13.08□□□□□ -0.32
HERC4-207ENST00000460168 PHKG2P15735 406 aa13.08□□□□□ -0.32
HERC4-207ENST00000460168 MVPQ14764 893 aaKnown RBP13.08□□□□□ -0.32
HERC4-207ENST00000460168 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
HERC4-207ENST00000460168 ITPRIPQ8IWB1 547 aa13.08□□□□□ -0.32
HERC4-207ENST00000460168 ADAMTS2O95450 1211 aa13.07□□□□□ -0.32
HERC4-207ENST00000460168 IL2RBP14784 551 aa13.07□□□□□ -0.32
HERC4-207ENST00000460168 CNPY4Q8N129 248 aa13.07□□□□□ -0.32
HERC4-207ENST00000460168 ARHGAP45Q92619 1136 aa13.07□□□□□ -0.32
HERC4-207ENST00000460168 NUTM2BA6NNL0 878 aaPredicted RBP13.06□□□□□ -0.32
HERC4-207ENST00000460168 NUTM2EB1AL46 878 aaPredicted RBP13.06□□□□□ -0.32
HERC4-207ENST00000460168 CYP27B1O15528 508 aa13.06□□□□□ -0.32
HERC4-207ENST00000460168 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
HERC4-207ENST00000460168 NUTM2AQ8IVF1 878 aaPredicted RBP13.06□□□□□ -0.32
HERC4-207ENST00000460168 KDM3BQ7LBC6 1761 aa13.06□□□□□ -0.32
HERC4-207ENST00000460168 HMGB1P09429 215 aaKnown RBP13.05□□□□□ -0.32
HERC4-207ENST00000460168 TMEM57Q8N5G2 664 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
HERC4-207ENST00000460168 DCAF5Q96JK2 942 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 STK31Q9BXU1 1019 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 DDX19BQ9UMR2 479 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 CCDC9Q9Y3X0 531 aaKnown RBP13.05□□□□□ -0.32
HERC4-207ENST00000460168 SCN11AQ9UI33 1791 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 SOS1Q07889 1333 aaPredicted RBP13.05□□□□□ -0.32
HERC4-207ENST00000460168 PCDH11XQ9BZA7 1347 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 PCDH11YQ9BZA8 1340 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 ADAMTS7Q9UKP4 1686 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 KDM6AO15550 1401 aaPredicted RBP13.05□□□□□ -0.32
HERC4-207ENST00000460168 SLC4A2P04920 1241 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 TICAM2Q86XR7 235 aa13.05□□□□□ -0.32
HERC4-207ENST00000460168 EIF4A1P60842 406 aaKnown RBP13.04□□□□□ -0.32
HERC4-207ENST00000460168 CCDC30Q5VVM6 783 aa13.04□□□□□ -0.32
HERC4-207ENST00000460168 API5Q9BZZ5 524 aaKnown RBP13.04□□□□□ -0.32
HERC4-207ENST00000460168 CERKQ8TCT0 537 aa13.04□□□□□ -0.32
HERC4-207ENST00000460168 NECTIN2Q92692 538 aa13.04□□□□□ -0.32
HERC4-207ENST00000460168 SLC52A2Q9HAB3 445 aa13.04□□□□□ -0.32
HERC4-207ENST00000460168 SIPA1L3O60292 1781 aaPredicted RBP13.03□□□□□ -0.32
HERC4-207ENST00000460168 KCNQ3O43525 872 aa13.03□□□□□ -0.32
HERC4-207ENST00000460168 PLCB2Q00722 1185 aa13.03□□□□□ -0.32
HERC4-207ENST00000460168 HDGFL1Q5TGJ6 251 aa13.03□□□□□ -0.32
HERC4-207ENST00000460168 NFATC2IPQ8NCF5 419 aa13.03□□□□□ -0.32
HERC4-207ENST00000460168 PLCH1Q4KWH8 1693 aa13.02□□□□□ -0.32
HERC4-207ENST00000460168 PTPRCP08575 1304 aa13.02□□□□□ -0.32
HERC4-207ENST00000460168 CENPQQ7L2Z9 268 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms