RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 LINC00116Q8NCU8 138 aa31■■■□□ 2.55
PTPN4-207ENST00000460162 ATG3Q9NT62 314 aa31■■■□□ 2.55
PTPN4-207ENST00000460162 SCN11AQ9UI33 1791 aa30.98■■■□□ 2.55
PTPN4-207ENST00000460162 ATP6V1AP38606 617 aa30.98■■■□□ 2.55
PTPN4-207ENST00000460162 SULT6B1Q6IMI4 303 aa30.98■■■□□ 2.55
PTPN4-207ENST00000460162 AMIGO3Q86WK7 504 aa30.98■■■□□ 2.55
PTPN4-207ENST00000460162 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.97■■■□□ 2.55
PTPN4-207ENST00000460162 PER1O15534 1290 aaPredicted RBP30.97■■■□□ 2.55
PTPN4-207ENST00000460162 ITPK1Q13572 414 aa30.97■■■□□ 2.55
PTPN4-207ENST00000460162 NLGN2Q8NFZ4 835 aa30.97■■■□□ 2.55
PTPN4-207ENST00000460162 PHF14O94880 888 aa30.96■■■□□ 2.55
PTPN4-207ENST00000460162 GPR162Q16538 588 aa30.96■■■□□ 2.55
PTPN4-207ENST00000460162 C1orf141Q5JVX7 400 aa30.96■■■□□ 2.55
PTPN4-207ENST00000460162 CICQ96RK0 1608 aaPredicted RBP30.95■■■□□ 2.54
PTPN4-207ENST00000460162 NPC1L1Q9UHC9 1359 aa30.94■■■□□ 2.54
PTPN4-207ENST00000460162 GNPATO15228 680 aa30.93■■■□□ 2.54
PTPN4-207ENST00000460162 MTHFSP49914 203 aa30.93■■■□□ 2.54
PTPN4-207ENST00000460162 GOLGB1Q14789 3259 aaKnown RBP30.93■■■□□ 2.54
PTPN4-207ENST00000460162 CABP4P57796 275 aa30.92■■■□□ 2.54
PTPN4-207ENST00000460162 VIRMAQ69YN4 1812 aaKnown RBP30.91■■■□□ 2.54
PTPN4-207ENST00000460162 CC2D1BQ5T0F9 858 aaKnown RBP30.89■■■□□ 2.54
PTPN4-207ENST00000460162 CD2APQ9Y5K6 639 aa30.89■■■□□ 2.54
PTPN4-207ENST00000460162 PELP1Q8IZL8 1130 aaKnown RBP30.88■■■□□ 2.53
PTPN4-207ENST00000460162 SLC4A9Q96Q91 983 aa30.88■■■□□ 2.53
PTPN4-207ENST00000460162 MRC1P22897 1456 aa30.88■■■□□ 2.53
PTPN4-207ENST00000460162 SMIM5Q71RC9 77 aa30.87■■■□□ 2.53
PTPN4-207ENST00000460162 RBM42Q9BTD8 480 aaKnown RBP30.87■■■□□ 2.53
PTPN4-207ENST00000460162 CNTNAP4Q9C0A0 1308 aa30.87■■■□□ 2.53
PTPN4-207ENST00000460162 COL3A1P02461 1466 aaPredicted RBP30.87■■■□□ 2.53
PTPN4-207ENST00000460162 TJP1Q07157 1748 aa30.87■■■□□ 2.53
PTPN4-207ENST00000460162 ZNF784Q8NCA9 323 aaPredicted RBP30.86■■■□□ 2.53
PTPN4-207ENST00000460162 ADAMTS7Q9UKP4 1686 aa30.86■■■□□ 2.53
PTPN4-207ENST00000460162 C4AP0C0L4 1744 aa30.86■■■□□ 2.53
PTPN4-207ENST00000460162 AKAP4Q5JQC9 854 aa30.84■■■□□ 2.53
PTPN4-207ENST00000460162 RTCBQ9Y3I0 505 aaKnown RBP30.84■■■□□ 2.53
PTPN4-207ENST00000460162 DIAPH1O60610 1272 aaKnown RBP30.83■■■□□ 2.53
PTPN4-207ENST00000460162 RC3H1Q5TC82 1133 aaKnown RBP30.83■■■□□ 2.53
PTPN4-207ENST00000460162 MYH14Q7Z406 1995 aaKnown RBP30.83■■■□□ 2.53
PTPN4-207ENST00000460162 ADRA2BP18089 450 aa30.82■■■□□ 2.52
PTPN4-207ENST00000460162 GRIN3BO60391 1043 aa30.81■■■□□ 2.52
PTPN4-207ENST00000460162 HMOX1P09601 288 aa30.81■■■□□ 2.52
PTPN4-207ENST00000460162 NFATC2IPQ8NCF5 419 aa30.81■■■□□ 2.52
PTPN4-207ENST00000460162 YBX3P16989 372 aaKnown RBP eCLIP30.8■■■□□ 2.52
PTPN4-207ENST00000460162 KIF13BQ9NQT8 1826 aa30.8■■■□□ 2.52
PTPN4-207ENST00000460162 TRAPPC3LQ5T215 181 aa30.78■■■□□ 2.52
PTPN4-207ENST00000460162 PTCD1O75127 700 aaKnown RBP30.77■■■□□ 2.52
PTPN4-207ENST00000460162 RPS6KA4O75676 772 aa30.76■■■□□ 2.51
PTPN4-207ENST00000460162 SLC52A2Q9HAB3 445 aa30.76■■■□□ 2.51
PTPN4-207ENST00000460162 MMP10P09238 476 aa30.73■■■□□ 2.51
PTPN4-207ENST00000460162 NLGN1Q8N2Q7 840 aa30.73■■■□□ 2.51
PTPN4-207ENST00000460162 ARHGEF1Q92888 912 aaKnown RBP30.73■■■□□ 2.51
PTPN4-207ENST00000460162 UBR2Q8IWV8 1755 aa30.73■■■□□ 2.51
PTPN4-207ENST00000460162 KIAA1551Q9HCM1 1747 aa30.73■■■□□ 2.51
PTPN4-207ENST00000460162 RNMTO43148 476 aaKnown RBP30.72■■■□□ 2.51
PTPN4-207ENST00000460162 CRKLP46109 303 aaKnown RBP30.72■■■□□ 2.51
PTPN4-207ENST00000460162 MTHFSDQ2M296 383 aaKnown RBP30.72■■■□□ 2.51
PTPN4-207ENST00000460162 KCPQ6ZWJ8 1503 aa30.72■■■□□ 2.51
PTPN4-207ENST00000460162 LGR6Q9HBX8 967 aa30.71■■■□□ 2.51
PTPN4-207ENST00000460162 RFC4P35249 363 aa30.7■■■□□ 2.51
PTPN4-207ENST00000460162 C10orf71Q711Q0 1435 aa30.7■■■□□ 2.5
PTPN4-207ENST00000460162 CNGB1Q14028 1251 aaPredicted RBP30.69■■■□□ 2.5
PTPN4-207ENST00000460162 GYS1P13807 737 aa30.68■■■□□ 2.5
PTPN4-207ENST00000460162 U2SURPO15042 1029 aaKnown RBP30.67■■■□□ 2.5
PTPN4-207ENST00000460162 PXDNLA1KZ92 1463 aa30.67■■■□□ 2.5
PTPN4-207ENST00000460162 SIPA1L3O60292 1781 aaPredicted RBP30.66■■■□□ 2.5
PTPN4-207ENST00000460162 N4BP2Q86UW6 1770 aaPredicted RBP30.64■■■□□ 2.5
PTPN4-207ENST00000460162 GAS2L2Q8NHY3 880 aa30.63■■■□□ 2.49
PTPN4-207ENST00000460162 CFAP53Q96M91 514 aa30.63■■■□□ 2.49
PTPN4-207ENST00000460162 USP42Q9H9J4 1324 aaKnown RBP30.63■■■□□ 2.49
PTPN4-207ENST00000460162 DNAJC10Q8IXB1 793 aa30.62■■■□□ 2.49
PTPN4-207ENST00000460162 CCDC87Q9NVE4 849 aa30.62■■■□□ 2.49
PTPN4-207ENST00000460162 BRCA1P38398 1863 aaKnown RBP30.61■■■□□ 2.49
PTPN4-207ENST00000460162 SLC39A6Q13433 755 aa30.61■■■□□ 2.49
PTPN4-207ENST00000460162 INTS5Q6P9B9 1019 aaKnown RBP30.61■■■□□ 2.49
PTPN4-207ENST00000460162 PARP3Q9Y6F1 533 aa30.6■■■□□ 2.49
PTPN4-207ENST00000460162 TGFB2P61812 414 aa30.59■■■□□ 2.49
PTPN4-207ENST00000460162 VSIG10Q8N0Z9 540 aa30.59■■■□□ 2.49
PTPN4-207ENST00000460162 ADCY9O60503 1353 aa30.58■■■□□ 2.49
PTPN4-207ENST00000460162 SOS1Q07889 1333 aaPredicted RBP30.58■■■□□ 2.49
PTPN4-207ENST00000460162 GNAT3A8MTJ3 354 aa30.57■■■□□ 2.48
PTPN4-207ENST00000460162 CYP19A1P11511 503 aaPredicted RBP30.57■■■□□ 2.48
PTPN4-207ENST00000460162 SRP68Q9UHB9 627 aaKnown RBP30.57■■■□□ 2.48
PTPN4-207ENST00000460162 ATP10DQ9P241 1426 aa30.56■■■□□ 2.48
PTPN4-207ENST00000460162 WWC3Q9ULE0 1092 aa30.56■■■□□ 2.48
PTPN4-207ENST00000460162 TTC5Q8N0Z6 440 aa30.55■■■□□ 2.48
PTPN4-207ENST00000460162 COL15A1P39059 1388 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 GIGYF1O75420 1035 aaPredicted RBP30.54■■■□□ 2.48
PTPN4-207ENST00000460162 PPP2R1AP30153 589 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 TEFQ10587 303 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 FKBP8Q14318 412 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 RSPH6AQ9H0K4 717 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 NUDCQ9Y266 331 aa30.54■■■□□ 2.48
PTPN4-207ENST00000460162 PRKAR2BP31323 418 aa30.53■■■□□ 2.48
PTPN4-207ENST00000460162 CEMIPQ8WUJ3 1361 aa30.53■■■□□ 2.48
PTPN4-207ENST00000460162 IL17REQ8NFR9 667 aa30.52■■■□□ 2.48
PTPN4-207ENST00000460162 ZBTB1Q9Y2K1 713 aa30.52■■■□□ 2.48
PTPN4-207ENST00000460162 ARFGEF1Q9Y6D6 1849 aa30.52■■■□□ 2.48
PTPN4-207ENST00000460162 C1QTNF8P60827 252 aa30.51■■■□□ 2.47
PTPN4-207ENST00000460162 ZPR1O75312 459 aa30.5■■■□□ 2.47
PTPN4-207ENST00000460162 DDR1Q08345 913 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms