RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ATP6V1AP38606 617 aa21.65■■□□□ 1.06
COL7A1-203ENST00000459756 COL23A1Q86Y22 540 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-203ENST00000459756 ARXQ96QS3 562 aa21.65■■□□□ 1.06
COL7A1-203ENST00000459756 ZNF831Q5JPB2 1677 aa21.64■■□□□ 1.05
COL7A1-203ENST00000459756 MSH5O43196 834 aa21.64■■□□□ 1.05
COL7A1-203ENST00000459756 POLD1P28340 1107 aa21.64■■□□□ 1.05
COL7A1-203ENST00000459756 MTHFSDQ2M296 383 aaKnown RBP21.64■■□□□ 1.05
COL7A1-203ENST00000459756 NFATC2IPQ8NCF5 419 aa21.64■■□□□ 1.05
COL7A1-203ENST00000459756 LINC00116Q8NCU8 138 aa21.64■■□□□ 1.05
COL7A1-203ENST00000459756 ITPK1Q13572 414 aa21.63■■□□□ 1.05
COL7A1-203ENST00000459756 NUDCQ9Y266 331 aa21.63■■□□□ 1.05
COL7A1-203ENST00000459756 RBM42Q9BTD8 480 aaKnown RBP21.62■■□□□ 1.05
COL7A1-203ENST00000459756 UBR3Q6ZT12 1888 aa21.62■■□□□ 1.05
COL7A1-203ENST00000459756 FHDC1Q9C0D6 1143 aaPredicted RBP21.61■■□□□ 1.05
COL7A1-203ENST00000459756 RNMTO43148 476 aaKnown RBP21.6■■□□□ 1.05
COL7A1-203ENST00000459756 SLC52A2Q9HAB3 445 aa21.6■■□□□ 1.05
COL7A1-203ENST00000459756 LGR6Q9HBX8 967 aa21.6■■□□□ 1.05
COL7A1-203ENST00000459756 MAP3K5Q99683 1374 aa21.6■■□□□ 1.05
COL7A1-203ENST00000459756 ADAMTS7Q9UKP4 1686 aa21.6■■□□□ 1.05
COL7A1-203ENST00000459756 VIRMAQ69YN4 1812 aaKnown RBP21.59■■□□□ 1.05
COL7A1-203ENST00000459756 MRC1P22897 1456 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 DCAF8L1A6NGE4 600 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 SSFA2P28290 1259 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 GAS2L2Q8NHY3 880 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 SLC4A9Q96Q91 983 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 SYT17Q9BSW7 474 aa21.59■■□□□ 1.05
COL7A1-203ENST00000459756 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.58■■□□□ 1.05
COL7A1-203ENST00000459756 RSPH6AQ9H0K4 717 aa21.58■■□□□ 1.05
COL7A1-203ENST00000459756 GNPATO15228 680 aa21.57■■□□□ 1.04
COL7A1-203ENST00000459756 PTCD1O75127 700 aaKnown RBP21.57■■□□□ 1.04
COL7A1-203ENST00000459756 AMIGO3Q86WK7 504 aa21.57■■□□□ 1.04
COL7A1-203ENST00000459756 COL5A3P25940 1745 aaPredicted RBP21.57■■□□□ 1.04
COL7A1-203ENST00000459756 PHF14O94880 888 aa21.56■■□□□ 1.04
COL7A1-203ENST00000459756 U2AF1L5P0DN76 240 aaPredicted RBP21.56■■□□□ 1.04
COL7A1-203ENST00000459756 PRKAR2BP31323 418 aa21.56■■□□□ 1.04
COL7A1-203ENST00000459756 U2AF1Q01081 240 aaKnown RBP eCLIP21.56■■□□□ 1.04
COL7A1-203ENST00000459756 GNAT3A8MTJ3 354 aa21.55■■□□□ 1.04
COL7A1-203ENST00000459756 RC3H1Q5TC82 1133 aaKnown RBP21.55■■□□□ 1.04
COL7A1-203ENST00000459756 CNTNAP4Q9C0A0 1308 aa21.55■■□□□ 1.04
COL7A1-203ENST00000459756 FCHSD2O94868 740 aa21.54■■□□□ 1.04
COL7A1-203ENST00000459756 MSL1Q68DK7 614 aa21.54■■□□□ 1.04
COL7A1-203ENST00000459756 CICQ96RK0 1608 aaPredicted RBP21.54■■□□□ 1.04
COL7A1-203ENST00000459756 DDX10Q13206 875 aaKnown RBP21.53■■□□□ 1.04
COL7A1-203ENST00000459756 PHACTR3Q96KR7 559 aa21.53■■□□□ 1.04
COL7A1-203ENST00000459756 RTCBQ9Y3I0 505 aaKnown RBP21.53■■□□□ 1.04
COL7A1-203ENST00000459756 RALBP1Q15311 655 aa21.52■■□□□ 1.04
COL7A1-203ENST00000459756 SMIM5Q71RC9 77 aa21.52■■□□□ 1.04
COL7A1-203ENST00000459756 ADRA2BP18089 450 aa21.51■■□□□ 1.03
COL7A1-203ENST00000459756 ZEB1P37275 1124 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-203ENST00000459756 TJP1Q07157 1748 aa21.51■■□□□ 1.03
COL7A1-203ENST00000459756 RPS6KA4O75676 772 aa21.5■■□□□ 1.03
COL7A1-203ENST00000459756 TRAPPC3LQ5T215 181 aa21.5■■□□□ 1.03
COL7A1-203ENST00000459756 KLHL34Q8N239 644 aa21.5■■□□□ 1.03
COL7A1-203ENST00000459756 IL17REQ8NFR9 667 aa21.5■■□□□ 1.03
COL7A1-203ENST00000459756 TEFQ10587 303 aa21.49■■□□□ 1.03
COL7A1-203ENST00000459756 SLC39A6Q13433 755 aa21.49■■□□□ 1.03
COL7A1-203ENST00000459756 MYH14Q7Z406 1995 aaKnown RBP21.48■■□□□ 1.03
COL7A1-203ENST00000459756 CRKLP46109 303 aaKnown RBP21.48■■□□□ 1.03
COL7A1-203ENST00000459756 KCPQ6ZWJ8 1503 aa21.48■■□□□ 1.03
COL7A1-203ENST00000459756 CEMIPQ8WUJ3 1361 aa21.48■■□□□ 1.03
COL7A1-203ENST00000459756 SIPA1L3O60292 1781 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-203ENST00000459756 UBR2Q8IWV8 1755 aa21.46■■□□□ 1.03
COL7A1-203ENST00000459756 DNAJC10Q8IXB1 793 aa21.46■■□□□ 1.03
COL7A1-203ENST00000459756 TTC5Q8N0Z6 440 aa21.46■■□□□ 1.03
COL7A1-203ENST00000459756 VSIG10Q8N0Z9 540 aa21.46■■□□□ 1.03
COL7A1-203ENST00000459756 RFC4P35249 363 aa21.45■■□□□ 1.02
COL7A1-203ENST00000459756 ARHGEF1Q92888 912 aaKnown RBP21.45■■□□□ 1.02
COL7A1-203ENST00000459756 NEFMP07197 916 aa21.44■■□□□ 1.02
COL7A1-203ENST00000459756 RTF1Q92541 710 aaKnown RBP21.44■■□□□ 1.02
COL7A1-203ENST00000459756 CD2APQ9Y5K6 639 aa21.44■■□□□ 1.02
COL7A1-203ENST00000459756 UTRNP46939 3433 aa21.43■■□□□ 1.02
COL7A1-203ENST00000459756 HTATSF1O43719 755 aaKnown RBP21.43■■□□□ 1.02
COL7A1-203ENST00000459756 INTS5Q6P9B9 1019 aaKnown RBP21.43■■□□□ 1.02
COL7A1-203ENST00000459756 ZNF790Q6PG37 636 aa21.43■■□□□ 1.02
COL7A1-203ENST00000459756 NLGN1Q8N2Q7 840 aa21.43■■□□□ 1.02
COL7A1-203ENST00000459756 CCDC87Q9NVE4 849 aa21.43■■□□□ 1.02
COL7A1-203ENST00000459756 C4AP0C0L4 1744 aa21.43■■□□□ 1.02
COL7A1-203ENST00000459756 CYP19A1P11511 503 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-203ENST00000459756 NLGN2Q8NFZ4 835 aa21.42■■□□□ 1.02
COL7A1-203ENST00000459756 PNNQ9H307 717 aaKnown RBP21.42■■□□□ 1.02
COL7A1-203ENST00000459756 MYBBP1AQ9BQG0 1328 aaKnown RBP21.41■■□□□ 1.02
COL7A1-203ENST00000459756 GOLGB1Q14789 3259 aaKnown RBP21.41■■□□□ 1.02
COL7A1-203ENST00000459756 MMP10P09238 476 aa21.4■■□□□ 1.02
COL7A1-203ENST00000459756 BTBD11A6QL63 1104 aa21.39■■□□□ 1.01
COL7A1-203ENST00000459756 GYS1P13807 737 aa21.39■■□□□ 1.01
COL7A1-203ENST00000459756 GPR162Q16538 588 aa21.39■■□□□ 1.01
COL7A1-203ENST00000459756 MCM10Q7L590 875 aa21.39■■□□□ 1.01
COL7A1-203ENST00000459756 ZNF496Q96IT1 587 aaPredicted RBP21.39■■□□□ 1.01
COL7A1-203ENST00000459756 PLEKHF1Q96S99 279 aa21.39■■□□□ 1.01
COL7A1-203ENST00000459756 HEG1Q9ULI3 1381 aa21.38■■□□□ 1.01
COL7A1-203ENST00000459756 SOS1Q07889 1333 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-203ENST00000459756 STARD3NLO95772 234 aa21.38■■□□□ 1.01
COL7A1-203ENST00000459756 FMNL2Q96PY5 1086 aa21.38■■□□□ 1.01
COL7A1-203ENST00000459756 TEX13AQ9BXU3 409 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-203ENST00000459756 USP42Q9H9J4 1324 aaKnown RBP21.37■■□□□ 1.01
COL7A1-203ENST00000459756 YY1P25490 414 aa21.37■■□□□ 1.01
COL7A1-203ENST00000459756 MAPK8IP3Q9UPT6 1336 aa21.36■■□□□ 1.01
COL7A1-203ENST00000459756 ZBTB1Q9Y2K1 713 aa21.36■■□□□ 1.01
COL7A1-203ENST00000459756 DCTN1Q14203 1278 aa21.35■■□□□ 1.01
COL7A1-203ENST00000459756 NFE2L2Q16236 605 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms