RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 HMGB2P26583 209 aaKnown RBP27.69■■■□□ 2.02
VARS-218ENST00000459667 NFATC2IPQ8NCF5 419 aa27.69■■■□□ 2.02
VARS-218ENST00000459667 LGR6Q9HBX8 967 aa27.69■■■□□ 2.02
VARS-218ENST00000459667 TFCP2L1Q9NZI6 479 aa27.69■■■□□ 2.02
VARS-218ENST00000459667 MRC1P22897 1456 aa27.69■■■□□ 2.02
VARS-218ENST00000459667 ZNF316A6NFI3 1004 aaPredicted RBP27.68■■■□□ 2.02
VARS-218ENST00000459667 SPON1Q9HCB6 807 aa27.68■■■□□ 2.02
VARS-218ENST00000459667 MAP3K5Q99683 1374 aa27.68■■■□□ 2.02
VARS-218ENST00000459667 PHACTR3Q96KR7 559 aa27.67■■■□□ 2.02
VARS-218ENST00000459667 C4BP0C0L5 1744 aa27.67■■■□□ 2.02
VARS-218ENST00000459667 ZBTB7AO95365 584 aa27.66■■■□□ 2.02
VARS-218ENST00000459667 SLC52A2Q9HAB3 445 aa27.66■■■□□ 2.02
VARS-218ENST00000459667 PNPLA7Q6ZV29 1317 aa27.66■■■□□ 2.02
VARS-218ENST00000459667 GNAT3A8MTJ3 354 aa27.64■■■□□ 2.02
VARS-218ENST00000459667 ATP6V1AP38606 617 aa27.64■■■□□ 2.02
VARS-218ENST00000459667 RBM42Q9BTD8 480 aaKnown RBP27.64■■■□□ 2.02
VARS-218ENST00000459667 ZNF831Q5JPB2 1677 aa27.63■■■□□ 2.01
VARS-218ENST00000459667 ITPK1Q13572 414 aa27.62■■■□□ 2.01
VARS-218ENST00000459667 MTFR1LQ9H019 292 aa27.62■■■□□ 2.01
VARS-218ENST00000459667 PRKRIP1Q9H875 184 aaPredicted RBP27.62■■■□□ 2.01
VARS-218ENST00000459667 LINC00116Q8NCU8 138 aa27.61■■■□□ 2.01
VARS-218ENST00000459667 AK7Q96M32 723 aa27.61■■■□□ 2.01
VARS-218ENST00000459667 ATF5Q9Y2D1 282 aaPredicted RBP27.6■■■□□ 2.01
VARS-218ENST00000459667 SLC4A9Q96Q91 983 aa27.59■■■□□ 2.01
VARS-218ENST00000459667 PTCD1O75127 700 aaKnown RBP27.58■■■□□ 2.01
VARS-218ENST00000459667 NEFMP07197 916 aa27.58■■■□□ 2.01
VARS-218ENST00000459667 IL17REQ8NFR9 667 aa27.58■■■□□ 2.01
VARS-218ENST00000459667 UBR3Q6ZT12 1888 aa27.57■■■□□ 2
VARS-218ENST00000459667 SLC16A10Q8TF71 515 aa27.57■■■□□ 2
VARS-218ENST00000459667 PPP1R1BQ9UD71 204 aaPredicted RBP27.57■■■□□ 2
VARS-218ENST00000459667 COL5A3P25940 1745 aaPredicted RBP27.57■■■□□ 2
VARS-218ENST00000459667 TEFQ10587 303 aa27.56■■■□□ 2
VARS-218ENST00000459667 MSH5O43196 834 aa27.55■■■□□ 2
VARS-218ENST00000459667 PTGER2P43116 358 aa27.55■■■□□ 2
VARS-218ENST00000459667 SLC39A6Q13433 755 aa27.55■■■□□ 2
VARS-218ENST00000459667 COL23A1Q86Y22 540 aaPredicted RBP27.55■■■□□ 2
VARS-218ENST00000459667 FLAD1Q8NFF5 587 aa27.55■■■□□ 2
VARS-218ENST00000459667 CEMIPQ8WUJ3 1361 aa27.55■■■□□ 2
VARS-218ENST00000459667 SIPA1L3O60292 1781 aaPredicted RBP27.55■■■□□ 2
VARS-218ENST00000459667 CICQ96RK0 1608 aaPredicted RBP27.54■■■□□ 2
VARS-218ENST00000459667 PLEKHF1Q96S99 279 aa27.54■■■□□ 2
VARS-218ENST00000459667 PNNQ9H307 717 aaKnown RBP27.54■■■□□ 2
VARS-218ENST00000459667 TJP1Q07157 1748 aa27.53■■■□□ 2
VARS-218ENST00000459667 RTF1Q92541 710 aaKnown RBP27.53■■■□□ 2
VARS-218ENST00000459667 GNPATO15228 680 aa27.52■■■□□ 2
VARS-218ENST00000459667 PHF14O94880 888 aa27.52■■■□□ 2
VARS-218ENST00000459667 KCPQ6ZWJ8 1503 aa27.51■■■□□ 2
VARS-218ENST00000459667 UBR2Q8IWV8 1755 aa27.51■■□□□ 1.99
VARS-218ENST00000459667 MAPK8IP3Q9UPT6 1336 aa27.51■■□□□ 1.99
VARS-218ENST00000459667 AMIGO3Q86WK7 504 aa27.51■■□□□ 1.99
VARS-218ENST00000459667 SGIP1Q9BQI5 828 aa27.51■■□□□ 1.99
VARS-218ENST00000459667 COL24A1Q17RW2 1714 aa27.5■■□□□ 1.99
VARS-218ENST00000459667 DLG5Q8TDM6 1919 aa27.5■■□□□ 1.99
VARS-218ENST00000459667 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.5■■□□□ 1.99
VARS-218ENST00000459667 SSFA2P28290 1259 aa27.5■■□□□ 1.99
VARS-218ENST00000459667 CNTNAP4Q9C0A0 1308 aa27.49■■□□□ 1.99
VARS-218ENST00000459667 MCM10Q7L590 875 aa27.49■■□□□ 1.99
VARS-218ENST00000459667 TTC5Q8N0Z6 440 aa27.49■■□□□ 1.99
VARS-218ENST00000459667 HTATSF1O43719 755 aaKnown RBP27.48■■□□□ 1.99
VARS-218ENST00000459667 WDR43Q15061 677 aaKnown RBP eCLIP27.48■■□□□ 1.999e-6■■■□□ 15.6
VARS-218ENST00000459667 SMIM5Q71RC9 77 aa27.48■■□□□ 1.99
VARS-218ENST00000459667 RC3H1Q5TC82 1133 aaKnown RBP27.47■■□□□ 1.99
VARS-218ENST00000459667 DCTN1Q14203 1278 aa27.46■■□□□ 1.99
VARS-218ENST00000459667 NFE2L2Q16236 605 aa27.46■■□□□ 1.99
VARS-218ENST00000459667 MYH14Q7Z406 1995 aaKnown RBP27.46■■□□□ 1.99
VARS-218ENST00000459667 POLD1P28340 1107 aa27.45■■□□□ 1.98
VARS-218ENST00000459667 ZNF790Q6PG37 636 aa27.45■■□□□ 1.98
VARS-218ENST00000459667 DNAJC10Q8IXB1 793 aa27.45■■□□□ 1.98
VARS-218ENST00000459667 RTCBQ9Y3I0 505 aaKnown RBP27.45■■□□□ 1.98
VARS-218ENST00000459667 CRKLP46109 303 aaKnown RBP27.44■■□□□ 1.98
VARS-218ENST00000459667 BTBD11A6QL63 1104 aa27.43■■□□□ 1.98
VARS-218ENST00000459667 MSL1Q68DK7 614 aa27.43■■□□□ 1.98
VARS-218ENST00000459667 ARXQ96QS3 562 aa27.43■■□□□ 1.98
VARS-218ENST00000459667 VSIG10Q8N0Z9 540 aa27.42■■□□□ 1.98
VARS-218ENST00000459667 RPS6KA4O75676 772 aa27.41■■□□□ 1.98
VARS-218ENST00000459667 TRAPPC3LQ5T215 181 aa27.4■■□□□ 1.98
VARS-218ENST00000459667 ZNF496Q96IT1 587 aaPredicted RBP27.4■■□□□ 1.98
VARS-218ENST00000459667 HEG1Q9ULI3 1381 aa27.39■■□□□ 1.98
VARS-218ENST00000459667 ADRA2BP18089 450 aa27.39■■□□□ 1.98
VARS-218ENST00000459667 CCDC146Q8IYE0 955 aa27.39■■□□□ 1.98
VARS-218ENST00000459667 ADAMTS8Q9UP79 889 aa27.39■■□□□ 1.98
VARS-218ENST00000459667 ANP32CO43423 234 aa27.38■■□□□ 1.97
VARS-218ENST00000459667 CYP19A1P11511 503 aaPredicted RBP27.38■■□□□ 1.97
VARS-218ENST00000459667 FMNL2Q96PY5 1086 aa27.38■■□□□ 1.97
VARS-218ENST00000459667 FHDC1Q9C0D6 1143 aaPredicted RBP27.38■■□□□ 1.97
VARS-218ENST00000459667 CCDC87Q9NVE4 849 aa27.38■■□□□ 1.97
VARS-218ENST00000459667 C4AP0C0L4 1744 aa27.38■■□□□ 1.97
VARS-218ENST00000459667 KCNQ3O43525 872 aa27.37■■□□□ 1.97
VARS-218ENST00000459667 INTS5Q6P9B9 1019 aaKnown RBP27.37■■□□□ 1.97
VARS-218ENST00000459667 TAF7Q15545 349 aaPredicted RBP27.36■■□□□ 1.97
VARS-218ENST00000459667 ARHGEF1Q92888 912 aaKnown RBP27.36■■□□□ 1.97
VARS-218ENST00000459667 RUNDC1Q96C34 613 aa27.36■■□□□ 1.97
VARS-218ENST00000459667 TMPOP42166 694 aaKnown RBP27.35■■□□□ 1.97
VARS-218ENST00000459667 RIPK4P57078 832 aa27.35■■□□□ 1.97
VARS-218ENST00000459667 RFC4P35249 363 aa27.34■■□□□ 1.97
VARS-218ENST00000459667 THUMPD2Q9BTF0 503 aaKnown RBP27.34■■□□□ 1.97
VARS-218ENST00000459667 STARD3NLO95772 234 aa27.33■■□□□ 1.97
VARS-218ENST00000459667 KLHL34Q8N239 644 aa27.33■■□□□ 1.97
VARS-218ENST00000459667 SYT17Q9BSW7 474 aa27.33■■□□□ 1.97
VARS-218ENST00000459667 TEX13AQ9BXU3 409 aaPredicted RBP27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms