RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 LOC102724428A0A0B4J2F2 783 aa23.26■■□□□ 1.31
USP39-208ENST00000455732 SIK1P57059 783 aa23.26■■□□□ 1.31
USP39-208ENST00000455732 ATG3Q9NT62 314 aa23.26■■□□□ 1.31
USP39-208ENST00000455732 NUDCQ9Y266 331 aa23.26■■□□□ 1.31
USP39-208ENST00000455732 AKAP4Q5JQC9 854 aa23.24■■□□□ 1.31
USP39-208ENST00000455732 ADAMTS7Q9UKP4 1686 aa23.23■■□□□ 1.31
USP39-208ENST00000455732 YY1P25490 414 aa23.22■■□□□ 1.31
USP39-208ENST00000455732 COL23A1Q86Y22 540 aaPredicted RBP23.22■■□□□ 1.31
USP39-208ENST00000455732 CABP4P57796 275 aa23.21■■□□□ 1.31
USP39-208ENST00000455732 MTHFSDQ2M296 383 aaKnown RBP23.21■■□□□ 1.31
USP39-208ENST00000455732 RSPH6AQ9H0K4 717 aa23.21■■□□□ 1.31
USP39-208ENST00000455732 COL5A3P25940 1745 aaPredicted RBP23.21■■□□□ 1.31
USP39-208ENST00000455732 ITPK1Q13572 414 aa23.2■■□□□ 1.3
USP39-208ENST00000455732 LINC00116Q8NCU8 138 aa23.2■■□□□ 1.3
USP39-208ENST00000455732 ATP6V1AP38606 617 aa23.19■■□□□ 1.3
USP39-208ENST00000455732 NFATC2IPQ8NCF5 419 aa23.19■■□□□ 1.3
USP39-208ENST00000455732 SLC4A9Q96Q91 983 aa23.19■■□□□ 1.3
USP39-208ENST00000455732 MRC1P22897 1456 aa23.18■■□□□ 1.3
USP39-208ENST00000455732 U2AF1L5P0DN76 240 aaPredicted RBP23.18■■□□□ 1.3
USP39-208ENST00000455732 U2AF1Q01081 240 aaKnown RBP eCLIP23.18■■□□□ 1.3
USP39-208ENST00000455732 AMIGO3Q86WK7 504 aa23.18■■□□□ 1.3
USP39-208ENST00000455732 MYBBP1AQ9BQG0 1328 aaKnown RBP23.17■■□□□ 1.3
USP39-208ENST00000455732 FCHSD2O94868 740 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 PRKAR2BP31323 418 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 FLAD1Q8NFF5 587 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 GAS2L2Q8NHY3 880 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 AK7Q96M32 723 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 ARXQ96QS3 562 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 FHDC1Q9C0D6 1143 aaPredicted RBP23.17■■□□□ 1.3
USP39-208ENST00000455732 LGR6Q9HBX8 967 aa23.17■■□□□ 1.3
USP39-208ENST00000455732 MYH14Q7Z406 1995 aaKnown RBP23.17■■□□□ 1.3
USP39-208ENST00000455732 CICQ96RK0 1608 aaPredicted RBP23.16■■□□□ 1.3
USP39-208ENST00000455732 ZNF316A6NFI3 1004 aaPredicted RBP23.15■■□□□ 1.3
USP39-208ENST00000455732 RNMTO43148 476 aaKnown RBP23.15■■□□□ 1.3
USP39-208ENST00000455732 SYT17Q9BSW7 474 aa23.15■■□□□ 1.3
USP39-208ENST00000455732 MAP3K5Q99683 1374 aa23.14■■□□□ 1.3
USP39-208ENST00000455732 MSH5O43196 834 aa23.14■■□□□ 1.29
USP39-208ENST00000455732 RBM42Q9BTD8 480 aaKnown RBP23.14■■□□□ 1.29
USP39-208ENST00000455732 SLC52A2Q9HAB3 445 aa23.14■■□□□ 1.29
USP39-208ENST00000455732 TJP1Q07157 1748 aa23.13■■□□□ 1.29
USP39-208ENST00000455732 POLD1P28340 1107 aa23.13■■□□□ 1.29
USP39-208ENST00000455732 SIPA1L3O60292 1781 aaPredicted RBP23.12■■□□□ 1.29
USP39-208ENST00000455732 UTRNP46939 3433 aa23.12■■□□□ 1.29
USP39-208ENST00000455732 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.12■■□□□ 1.29
USP39-208ENST00000455732 SSFA2P28290 1259 aa23.12■■□□□ 1.29
USP39-208ENST00000455732 SMIM5Q71RC9 77 aa23.12■■□□□ 1.29
USP39-208ENST00000455732 PHACTR3Q96KR7 559 aa23.12■■□□□ 1.29
USP39-208ENST00000455732 PRKRIP1Q9H875 184 aaPredicted RBP23.12■■□□□ 1.29
USP39-208ENST00000455732 UBR2Q8IWV8 1755 aa23.1■■□□□ 1.29
USP39-208ENST00000455732 GNAT3A8MTJ3 354 aa23.1■■□□□ 1.29
USP39-208ENST00000455732 GNPATO15228 680 aa23.1■■□□□ 1.29
USP39-208ENST00000455732 PTCD1O75127 700 aaKnown RBP23.09■■□□□ 1.29
USP39-208ENST00000455732 PHF14O94880 888 aa23.09■■□□□ 1.29
USP39-208ENST00000455732 RC3H1Q5TC82 1133 aaKnown RBP23.09■■□□□ 1.29
USP39-208ENST00000455732 MSL1Q68DK7 614 aa23.09■■□□□ 1.29
USP39-208ENST00000455732 CNTNAP4Q9C0A0 1308 aa23.08■■□□□ 1.29
USP39-208ENST00000455732 CEMIPQ8WUJ3 1361 aa23.07■■□□□ 1.28
USP39-208ENST00000455732 KCPQ6ZWJ8 1503 aa23.07■■□□□ 1.28
USP39-208ENST00000455732 C4AP0C0L4 1744 aa23.06■■□□□ 1.28
USP39-208ENST00000455732 IL17REQ8NFR9 667 aa23.06■■□□□ 1.28
USP39-208ENST00000455732 SLC39A6Q13433 755 aa23.05■■□□□ 1.28
USP39-208ENST00000455732 PLEKHF1Q96S99 279 aa23.05■■□□□ 1.28
USP39-208ENST00000455732 RTCBQ9Y3I0 505 aaKnown RBP23.05■■□□□ 1.28
USP39-208ENST00000455732 PNNQ9H307 717 aaKnown RBP23.04■■□□□ 1.28
USP39-208ENST00000455732 RPS6KA4O75676 772 aa23.03■■□□□ 1.28
USP39-208ENST00000455732 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
USP39-208ENST00000455732 HTATSF1O43719 755 aaKnown RBP23.02■■□□□ 1.28
USP39-208ENST00000455732 NEFMP07197 916 aa23.02■■□□□ 1.28
USP39-208ENST00000455732 CRKLP46109 303 aaKnown RBP23.02■■□□□ 1.28
USP39-208ENST00000455732 ADRA2BP18089 450 aa23.01■■□□□ 1.27
USP39-208ENST00000455732 TEFQ10587 303 aa23.01■■□□□ 1.27
USP39-208ENST00000455732 TRAPPC3LQ5T215 181 aa23.01■■□□□ 1.27
USP39-208ENST00000455732 KLHL34Q8N239 644 aa23.01■■□□□ 1.27
USP39-208ENST00000455732 ARHGEF1Q92888 912 aaKnown RBP23■■□□□ 1.27
USP39-208ENST00000455732 CHD4Q14839 1912 aa23■■□□□ 1.27
USP39-208ENST00000455732 DNAJC10Q8IXB1 793 aa22.99■■□□□ 1.27
USP39-208ENST00000455732 INTS5Q6P9B9 1019 aaKnown RBP22.98■■□□□ 1.27
USP39-208ENST00000455732 NLGN2Q8NFZ4 835 aa22.98■■□□□ 1.27
USP39-208ENST00000455732 RTF1Q92541 710 aaKnown RBP22.98■■□□□ 1.27
USP39-208ENST00000455732 VSIG10Q8N0Z9 540 aa22.97■■□□□ 1.27
USP39-208ENST00000455732 GOLGB1Q14789 3259 aaKnown RBP22.97■■□□□ 1.27
USP39-208ENST00000455732 MAPK8IP3Q9UPT6 1336 aa22.97■■□□□ 1.27
USP39-208ENST00000455732 CYP19A1P11511 503 aaPredicted RBP22.96■■□□□ 1.27
USP39-208ENST00000455732 NFE2L2Q16236 605 aa22.96■■□□□ 1.27
USP39-208ENST00000455732 ZNF790Q6PG37 636 aa22.95■■□□□ 1.26
USP39-208ENST00000455732 KIF13BQ9NQT8 1826 aa22.95■■□□□ 1.26
USP39-208ENST00000455732 CD2APQ9Y5K6 639 aa22.95■■□□□ 1.26
USP39-208ENST00000455732 RFC4P35249 363 aa22.94■■□□□ 1.26
USP39-208ENST00000455732 WDR43Q15061 677 aaKnown RBP eCLIP22.94■■□□□ 1.26
USP39-208ENST00000455732 MCM10Q7L590 875 aa22.94■■□□□ 1.26
USP39-208ENST00000455732 TTC5Q8N0Z6 440 aa22.94■■□□□ 1.26
USP39-208ENST00000455732 CCDC87Q9NVE4 849 aa22.94■■□□□ 1.26
USP39-208ENST00000455732 GYS1P13807 737 aa22.93■■□□□ 1.26
USP39-208ENST00000455732 NLGN1Q8N2Q7 840 aa22.93■■□□□ 1.26
USP39-208ENST00000455732 ZNF496Q96IT1 587 aaPredicted RBP22.93■■□□□ 1.26
USP39-208ENST00000455732 GPR162Q16538 588 aa22.92■■□□□ 1.26
USP39-208ENST00000455732 HEG1Q9ULI3 1381 aa22.91■■□□□ 1.26
USP39-208ENST00000455732 SOS1Q07889 1333 aaPredicted RBP22.91■■□□□ 1.26
USP39-208ENST00000455732 BTBD11A6QL63 1104 aa22.91■■□□□ 1.26
USP39-208ENST00000455732 MMP10P09238 476 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms