RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 CD2APQ9Y5K6 639 aa8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 C10orf71Q711Q0 1435 aa8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 KIF24Q5T7B8 1368 aa8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 KIF3CO14782 793 aa8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 PHKG2P15735 406 aa8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ATP6V1AP38606 617 aa8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 EIF4A2Q14240 407 aaKnown RBP8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 AEBP1Q8IUX7 1158 aa8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 SMARCC1Q92922 1105 aaPredicted RBP8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 POLKQ9UBT6 870 aa8.33□□□□□ -1.08
HLA-DPA3-207ENST00000454398 SSFA2P28290 1259 aa8.32□□□□□ -1.08
HLA-DPA3-207ENST00000454398 SPG7Q9UQ90 795 aa8.32□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ADAMTS7Q9UKP4 1686 aa8.32□□□□□ -1.08
HLA-DPA3-207ENST00000454398 WASHC2AQ641Q2 1341 aa8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 FLAD1Q8NFF5 587 aa8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 RBM42Q9BTD8 480 aaKnown RBP8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 SRP68Q9UHB9 627 aaKnown RBP8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 BCS1LQ9Y276 419 aa8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 PCNTO95613 3336 aa8.31□□□□□ -1.08
HLA-DPA3-207ENST00000454398 A0A0G2JLW4 131 aa8.3□□□□□ -1.08
HLA-DPA3-207ENST00000454398 HSPA6P17066 643 aa8.3□□□□□ -1.08
HLA-DPA3-207ENST00000454398 KCNA3P22001 575 aa8.3□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ZNF530Q6P9A1 599 aaPredicted RBP8.3□□□□□ -1.08
HLA-DPA3-207ENST00000454398 VIRMAQ69YN4 1812 aaKnown RBP8.3□□□□□ -1.08
HLA-DPA3-207ENST00000454398 PTCD1O75127 700 aaKnown RBP8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 HTRA3P83110 453 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 CDCA8Q53HL2 280 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 IFNL2Q8IZJ0 200 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 NMRK2Q9NPI5 230 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ZNF831Q5JPB2 1677 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 SCN11AQ9UI33 1791 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ARFGEF1Q9Y6D6 1849 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 WDR90Q96KV7 1748 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 KCPQ6ZWJ8 1503 aa8.29□□□□□ -1.08
HLA-DPA3-207ENST00000454398 GYS1P13807 737 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 DPEP1P16444 411 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 PRELPP51888 382 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 DDR1Q08345 913 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 RTCBQ9Y3I0 505 aaKnown RBP8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 TIAM2Q8IVF5 1701 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 CNTNAP4Q9C0A0 1308 aa8.28□□□□□ -1.08
HLA-DPA3-207ENST00000454398 ARHGEF1Q92888 912 aaKnown RBP8.27□□□□□ -1.09
HLA-DPA3-207ENST00000454398 AFDNP55196 1824 aaKnown RBP8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 COL11A2P13942 1736 aaPredicted RBP8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CARMIL3Q8ND23 1372 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SLC24A1O60721 1099 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 FCHSD2O94868 740 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 HSPA5P11021 654 aaKnown RBP8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CHRNA5P30532 468 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CRKLP46109 303 aaKnown RBP8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 FKBP8Q14318 412 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 ARHGAP27Q6ZUM4 889 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 DNAJC5GQ8N7S2 189 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 PCGF6Q9BYE7 350 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 MRC1P22897 1456 aa8.26□□□□□ -1.09
HLA-DPA3-207ENST00000454398 RFC4P35249 363 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CABP4P57796 275 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 RASSF7Q02833 373 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CNGB1Q14028 1251 aaPredicted RBP8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 TRAPPC3LQ5T215 181 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 C9orf131Q5VYM1 1079 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 DCAF5Q96JK2 942 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 PANK3Q9H999 370 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CCDC87Q9NVE4 849 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 USP42Q9H9J4 1324 aaKnown RBP8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 DLEC1Q9Y238 1755 aa8.25□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SCN7AQ01118 1682 aa8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 TNRC6CQ9HCJ0 1690 aaKnown RBP8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 TRIM26Q12899 539 aaPredicted RBP8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SULT6B1Q6IMI4 303 aa8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 INTS5Q6P9B9 1019 aaKnown RBP8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 PARP3Q9Y6F1 533 aa8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 UBR2Q8IWV8 1755 aa8.24□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SBF1O95248 1867 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 CACNA1SQ13698 1873 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 ERVV-2B6SEH9 535 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 RPS6KA4O75676 772 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 HMOX1P09601 288 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 MTHFSP49914 203 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SLC39A6Q13433 755 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 C1orf141Q5JVX7 400 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 DNAJC10Q8IXB1 793 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 NFATC2IPQ8NCF5 419 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 BCL2L12Q9HB09 334 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 RNF181Q9P0P0 153 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 ANKRD31Q8N7Z5 1873 aa8.23□□□□□ -1.09
HLA-DPA3-207ENST00000454398 COL15A1P39059 1388 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 POLRMTO00411 1230 aaKnown RBP8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 ADRA2BP18089 450 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 IL13P35225 146 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 PLEKHO1Q53GL0 409 aaPredicted RBP8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 MORC1Q86VD1 984 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 NLGN1Q8N2Q7 840 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 LGR6Q9HBX8 967 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 ZBTB1Q9Y2K1 713 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 NRXN2Q9P2S2 1712 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 SOS1Q07889 1333 aaPredicted RBP8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 PLEKHG2Q9H7P9 1386 aa8.22□□□□□ -1.09
HLA-DPA3-207ENST00000454398 HSP90AB1P08238 724 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms