RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SLURP2P0DP57 97 aa8.1□□□□□ -1.11
USP40-209ENST00000452724 SRSF11Q05519 484 aaKnown RBP8.1□□□□□ -1.11
USP40-209ENST00000452724 TLR1Q15399 786 aa8.1□□□□□ -1.11
USP40-209ENST00000452724 DBN1Q16643 649 aa8.1□□□□□ -1.11
USP40-209ENST00000452724 HRH3Q9Y5N1 445 aa8.1□□□□□ -1.11
USP40-209ENST00000452724 EML3Q32P44 896 aa8.09□□□□□ -1.11
USP40-209ENST00000452724 RHBDD1Q8TEB9 315 aa8.09□□□□□ -1.11
USP40-209ENST00000452724 FHDC1Q9C0D6 1143 aaPredicted RBP8.09□□□□□ -1.11
USP40-209ENST00000452724 NUCKS1Q9H1E3 243 aaKnown RBP8.09□□□□□ -1.11
USP40-209ENST00000452724 ETNK1Q9HBU6 452 aa8.09□□□□□ -1.11
USP40-209ENST00000452724 MBIPQ9NS73 344 aa8.09□□□□□ -1.11
USP40-209ENST00000452724 NSFL1CQ9UNZ2 370 aaKnown RBP8.09□□□□□ -1.11
USP40-209ENST00000452724 RNF225M0QZC1 329 aaPredicted RBP8.08□□□□□ -1.12
USP40-209ENST00000452724 ADAMTS2O95450 1211 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 CSB-PGBD3P0DP91 1061 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 PHKA2P46019 1235 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 GDF10P55107 478 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 MAP3K10Q02779 954 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 PGBD3Q8N328 593 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 FNBP4Q8N3X1 1017 aaPredicted RBP8.08□□□□□ -1.12
USP40-209ENST00000452724 NFATC2IPQ8NCF5 419 aa8.08□□□□□ -1.12
USP40-209ENST00000452724 GTPBP3Q969Y2 492 aaKnown RBP8.08□□□□□ -1.12
USP40-209ENST00000452724 INHAP05111 366 aa8.07□□□□□ -1.12
USP40-209ENST00000452724 SKIP12755 728 aa8.07□□□□□ -1.12
USP40-209ENST00000452724 GAS6Q14393 721 aa8.07□□□□□ -1.12
USP40-209ENST00000452724 LBRQ14739 615 aaKnown RBP8.07□□□□□ -1.12
USP40-209ENST00000452724 ZNF385CQ66K41 422 aaPredicted RBP8.07□□□□□ -1.12
USP40-209ENST00000452724 PPARGC1BQ86YN6 1023 aaKnown RBP8.07□□□□□ -1.12
USP40-209ENST00000452724 ALG2Q9H553 416 aa8.07□□□□□ -1.12
USP40-209ENST00000452724 GPAMQ9HCL2 828 aa8.07□□□□□ -1.12
USP40-209ENST00000452724 GPR25O00155 361 aa8.06□□□□□ -1.12
USP40-209ENST00000452724 C4orf17Q53FE4 359 aa8.06□□□□□ -1.12
USP40-209ENST00000452724 ENAMQ9NRM1 1142 aa8.06□□□□□ -1.12
USP40-209ENST00000452724 PHF24Q9UPV7 400 aa8.06□□□□□ -1.12
USP40-209ENST00000452724 NOD1Q9Y239 953 aa8.06□□□□□ -1.12
USP40-209ENST00000452724 SCNN1DP51172 638 aa8.05□□□□□ -1.12
USP40-209ENST00000452724 EFHC2Q5JST6 749 aa8.05□□□□□ -1.12
USP40-209ENST00000452724 ADAMTS8Q9UP79 889 aa8.05□□□□□ -1.12
USP40-209ENST00000452724 PIK3CDO00329 1044 aa8.04□□□□□ -1.12
USP40-209ENST00000452724 MX2P20592 715 aa8.04□□□□□ -1.12
USP40-209ENST00000452724 SMTNP53814 917 aa8.04□□□□□ -1.12
USP40-209ENST00000452724 MARSP56192 900 aaKnown RBP8.04□□□□□ -1.12
USP40-209ENST00000452724 TBC1D9Q6ZT07 1266 aa8.04□□□□□ -1.12
USP40-209ENST00000452724 CFHR5Q9BXR6 569 aa8.04□□□□□ -1.12
USP40-209ENST00000452724 NIFKQ9BYG3 293 aaKnown RBP8.04□□□□□ -1.12
USP40-209ENST00000452724 IGF1RP08069 1367 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 BACH1O14867 736 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 STAU1O95793 577 aaKnown RBP8.03□□□□□ -1.12
USP40-209ENST00000452724 MSX1P28360 303 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 PSME1Q06323 249 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 C1orf216Q8TAB5 229 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 WHAMMQ8TF30 809 aa8.03□□□□□ -1.12
USP40-209ENST00000452724 MAP2K3P46734 347 aa8.02□□□□□ -1.13
USP40-209ENST00000452724 PLA2G4AP47712 749 aa8.02□□□□□ -1.13
USP40-209ENST00000452724 KCNMA1Q12791 1236 aa8.02□□□□□ -1.13
USP40-209ENST00000452724 TRIM50Q86XT4 487 aa8.02□□□□□ -1.13
USP40-209ENST00000452724 SERTAD1Q9UHV2 236 aa8.02□□□□□ -1.13
USP40-209ENST00000452724 USP17L5A8MUK1 530 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 GTF2IP78347 998 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 NCOA4Q13772 614 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 NBPF1Q3BBV0 1214 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 LYPD4Q6UWN0 246 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 SLC4A9Q96Q91 983 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 RUBCNLQ9H714 662 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 PCDHGA11Q9Y5H2 935 aa8.01□□□□□ -1.13
USP40-209ENST00000452724 A6NJY4 79 aa8□□□□□ -1.13
USP40-209ENST00000452724 POM121CA8CG34 1229 aa8□□□□□ -1.13
USP40-209ENST00000452724 CDK2AP1O14519 115 aa8□□□□□ -1.13
USP40-209ENST00000452724 ARHGEF15O94989 841 aa8□□□□□ -1.13
USP40-209ENST00000452724 CELA2BP08218 269 aaPredicted RBP8□□□□□ -1.13
USP40-209ENST00000452724 FIGNL1Q6PIW4 674 aa8□□□□□ -1.13
USP40-209ENST00000452724 AIDAQ96BJ3 306 aa8□□□□□ -1.13
USP40-209ENST00000452724 SCARF2Q96GP6 870 aaPredicted RBP8□□□□□ -1.13
USP40-209ENST00000452724 CRISPLD1Q9H336 500 aa8□□□□□ -1.13
USP40-209ENST00000452724 ZNF777Q9ULD5 760 aaPredicted RBP8□□□□□ -1.13
USP40-209ENST00000452724 TMEM229AB2RXF0 380 aa7.99□□□□□ -1.13
USP40-209ENST00000452724 SUPT5HO00267 1087 aaKnown RBP7.99□□□□□ -1.13
USP40-209ENST00000452724 BCRP11274 1271 aa7.99□□□□□ -1.13
USP40-209ENST00000452724 TATP17735 454 aaPredicted RBP7.99□□□□□ -1.13
USP40-209ENST00000452724 ATP1A2P50993 1020 aa7.99□□□□□ -1.13
USP40-209ENST00000452724 HDGFL1Q5TGJ6 251 aa7.99□□□□□ -1.13
USP40-209ENST00000452724 ATXN7L1Q9ULK2 861 aaPredicted RBP7.99□□□□□ -1.13
USP40-209ENST00000452724 MTFR1Q15390 333 aa7.98□□□□□ -1.13
USP40-209ENST00000452724 PLEKHM2Q8IWE5 1019 aa7.98□□□□□ -1.13
USP40-209ENST00000452724 DEPDC4Q8N2C3 294 aa7.98□□□□□ -1.13
USP40-209ENST00000452724 LRRC4BQ9NT99 713 aa7.98□□□□□ -1.13
USP40-209ENST00000452724 CABP1Q9NZU7 370 aa7.98□□□□□ -1.13
USP40-209ENST00000452724 TMEM151AQ8N4L1 468 aa7.97□□□□□ -1.13
USP40-209ENST00000452724 NEDD1Q8NHV4 660 aa7.97□□□□□ -1.13
USP40-209ENST00000452724 ZDHHC3Q9NYG2 299 aa7.97□□□□□ -1.13
USP40-209ENST00000452724 RBM19Q9Y4C8 960 aaKnown RBP7.97□□□□□ -1.13
USP40-209ENST00000452724 USP17L3A6NCW0 530 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 USP17L4A6NCW7 530 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 ARID3CA6NKF2 412 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 ATP9BO43861 1147 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 ARSJQ5FYB0 599 aaPredicted RBP7.96□□□□□ -1.14
USP40-209ENST00000452724 USP17L2Q6R6M4 530 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 USP17L1Q7RTZ2 530 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 PODNQ7Z5L7 613 aa7.96□□□□□ -1.14
USP40-209ENST00000452724 NLRP8Q86W28 1048 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms