RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 ERVV-2B6SEH9 535 aa18.3■□□□□ 0.52
SHMT2-203ENST00000449049 CHL1O00533 1208 aa18.3■□□□□ 0.52
SHMT2-203ENST00000449049 TAF7Q15545 349 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-203ENST00000449049 SLC52A2Q9HAB3 445 aa18.3■□□□□ 0.52
SHMT2-203ENST00000449049 FANCIQ9NVI1 1328 aa18.3■□□□□ 0.52
SHMT2-203ENST00000449049 BCL9O00512 1426 aa18.29■□□□□ 0.52
SHMT2-203ENST00000449049 LAS1LQ9Y4W2 734 aaKnown RBP18.29■□□□□ 0.52
SHMT2-203ENST00000449049 ITGB4P16144 1822 aa18.28■□□□□ 0.52
SHMT2-203ENST00000449049 TSR2Q969E8 191 aaKnown RBP18.28■□□□□ 0.52
SHMT2-203ENST00000449049 MBIPQ9NS73 344 aa18.28■□□□□ 0.52
SHMT2-203ENST00000449049 PAPPAQ13219 1627 aa18.28■□□□□ 0.52
SHMT2-203ENST00000449049 RGS12O14924 1447 aa18.27■□□□□ 0.52
SHMT2-203ENST00000449049 CENPBP07199 599 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-203ENST00000449049 CABP4P57796 275 aa18.27■□□□□ 0.52
SHMT2-203ENST00000449049 NFATC2IPQ8NCF5 419 aa18.26■□□□□ 0.51
SHMT2-203ENST00000449049 TSPYL4Q9UJ04 414 aa18.26■□□□□ 0.51
SHMT2-203ENST00000449049 MIS18AQ9NYP9 233 aa18.25■□□□□ 0.51
SHMT2-203ENST00000449049 BTBD11A6QL63 1104 aa18.25■□□□□ 0.51
SHMT2-203ENST00000449049 NHSQ6T4R5 1651 aa18.24■□□□□ 0.51
SHMT2-203ENST00000449049 KRT27Q7Z3Y8 459 aa18.23■□□□□ 0.51
SHMT2-203ENST00000449049 TMOD3Q9NYL9 352 aa18.23■□□□□ 0.51
SHMT2-203ENST00000449049 UBR2Q8IWV8 1755 aa18.23■□□□□ 0.51
SHMT2-203ENST00000449049 SBF2Q86WG5 1849 aa18.22■□□□□ 0.51
SHMT2-203ENST00000449049 EXOSC9Q06265 439 aaKnown RBP18.22■□□□□ 0.51
SHMT2-203ENST00000449049 PRIM1P49642 420 aaKnown RBP18.21■□□□□ 0.51
SHMT2-203ENST00000449049 PIGBQ92521 554 aa18.21■□□□□ 0.51
SHMT2-203ENST00000449049 ZNF790Q6PG37 636 aa18.2■□□□□ 0.5
SHMT2-203ENST00000449049 KCNQ3O43525 872 aa18.2■□□□□ 0.5
SHMT2-203ENST00000449049 FAM182BQ5T319 152 aa18.2■□□□□ 0.5
SHMT2-203ENST00000449049 ACSBG1Q96GR2 724 aa18.2■□□□□ 0.5
SHMT2-203ENST00000449049 KCPQ6ZWJ8 1503 aa18.19■□□□□ 0.5
SHMT2-203ENST00000449049 CT47B1P0C2W7 299 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-203ENST00000449049 EIF4A1P60842 406 aaKnown RBP18.19■□□□□ 0.5
SHMT2-203ENST00000449049 SLC39A6Q13433 755 aa18.19■□□□□ 0.5
SHMT2-203ENST00000449049 HEG1Q9ULI3 1381 aa18.18■□□□□ 0.5
SHMT2-203ENST00000449049 FAM196AQ6ZSG2 479 aa18.18■□□□□ 0.5
SHMT2-203ENST00000449049 C8orf58Q8NAV2 365 aa18.18■□□□□ 0.5
SHMT2-203ENST00000449049 SYTL4Q96C24 671 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-203ENST00000449049 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
SHMT2-203ENST00000449049 TTC5Q8N0Z6 440 aa18.17■□□□□ 0.5
SHMT2-203ENST00000449049 KCNQ2O43526 872 aa18.16■□□□□ 0.5
SHMT2-203ENST00000449049 TSPYL6Q8N831 410 aa18.16■□□□□ 0.5
SHMT2-203ENST00000449049 BTAF1O14981 1849 aa18.16■□□□□ 0.5
SHMT2-203ENST00000449049 SOS1Q07889 1333 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-203ENST00000449049 TWISTNBQ3B726 338 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-203ENST00000449049 ATG3Q9NT62 314 aa18.16■□□□□ 0.5
SHMT2-203ENST00000449049 ASAP1Q9ULH1 1129 aa18.15■□□□□ 0.5
SHMT2-203ENST00000449049 C5P01031 1676 aa18.15■□□□□ 0.5
SHMT2-203ENST00000449049 VAMP4O75379 141 aa18.14■□□□□ 0.5
SHMT2-203ENST00000449049 ZNF496Q96IT1 587 aaPredicted RBP18.14■□□□□ 0.5
SHMT2-203ENST00000449049 HOXB7P09629 217 aa18.14■□□□□ 0.49
SHMT2-203ENST00000449049 FMNL2Q96PY5 1086 aa18.14■□□□□ 0.49
SHMT2-203ENST00000449049 LAMB4A4D0S4 1761 aa18.14■□□□□ 0.49
SHMT2-203ENST00000449049 ZNF428Q96B54 188 aa18.13■□□□□ 0.49
SHMT2-203ENST00000449049 RCAN3Q9UKA8 241 aa18.13■□□□□ 0.49
SHMT2-203ENST00000449049 CICQ96RK0 1608 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-203ENST00000449049 ELL2O00472 640 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-203ENST00000449049 GIGYF1O75420 1035 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-203ENST00000449049 PTF1AQ7RTS3 328 aa18.12■□□□□ 0.49
SHMT2-203ENST00000449049 BCL11BQ9C0K0 894 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-203ENST00000449049 ZNF831Q5JPB2 1677 aa18.11■□□□□ 0.49
SHMT2-203ENST00000449049 SMARCC1Q92922 1105 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-203ENST00000449049 RARSP54136 660 aaKnown RBP18.1■□□□□ 0.49
SHMT2-203ENST00000449049 KAT6BQ8WYB5 2073 aa18.1■□□□□ 0.49
SHMT2-203ENST00000449049 PALLDQ8WX93 1383 aa18.1■□□□□ 0.49
SHMT2-203ENST00000449049 TJP1Q07157 1748 aa18.1■□□□□ 0.49
SHMT2-203ENST00000449049 SNRPA1P09661 255 aaKnown RBP18.1■□□□□ 0.49
SHMT2-203ENST00000449049 VSIG10Q8N0Z9 540 aa18.1■□□□□ 0.49
SHMT2-203ENST00000449049 LY75O60449 1722 aa18.09■□□□□ 0.49
SHMT2-203ENST00000449049 PTCD1O75127 700 aaKnown RBP18.09■□□□□ 0.49
SHMT2-203ENST00000449049 ALDH1L2Q3SY69 923 aa18.09■□□□□ 0.49
SHMT2-203ENST00000449049 TNS1Q9HBL0 1735 aaKnown RBP18.08■□□□□ 0.48
SHMT2-203ENST00000449049 PRAMEF22A3QJZ6 481 aa18.08■□□□□ 0.48
SHMT2-203ENST00000449049 TRIM37O94972 964 aa18.07■□□□□ 0.48
SHMT2-203ENST00000449049 SSH1Q8WYL5 1049 aa18.07■□□□□ 0.48
SHMT2-203ENST00000449049 SLC4A9Q96Q91 983 aa18.07■□□□□ 0.48
SHMT2-203ENST00000449049 RBM42Q9BTD8 480 aaKnown RBP18.07■□□□□ 0.48
SHMT2-203ENST00000449049 CHMP4AQ9BY43 222 aa18.07■□□□□ 0.48
SHMT2-203ENST00000449049 HDGFL1Q5TGJ6 251 aa18.06■□□□□ 0.48
SHMT2-203ENST00000449049 CCDC30Q5VVM6 783 aa18.05■□□□□ 0.48
SHMT2-203ENST00000449049 GTF3C3Q9Y5Q9 886 aa18.05■□□□□ 0.48
SHMT2-203ENST00000449049 LOC102724428A0A0B4J2F2 783 aa18.05■□□□□ 0.48
SHMT2-203ENST00000449049 BCAR3O75815 825 aa18.05■□□□□ 0.48
SHMT2-203ENST00000449049 BRPF1P55201 1214 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-203ENST00000449049 SIK1P57059 783 aa18.05■□□□□ 0.48
SHMT2-203ENST00000449049 TEX13AQ9BXU3 409 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-203ENST00000449049 RNF123Q5XPI4 1314 aa18.04■□□□□ 0.48
SHMT2-203ENST00000449049 SMC4Q9NTJ3 1288 aa18.04■□□□□ 0.48
SHMT2-203ENST00000449049 USP16Q9Y5T5 823 aa18.04■□□□□ 0.48
SHMT2-203ENST00000449049 COL5A3P25940 1745 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-203ENST00000449049 EIF2S2P20042 333 aaKnown RBP18.04■□□□□ 0.48
SHMT2-203ENST00000449049 MRPL50Q8N5N7 158 aaKnown RBP18.04■□□□□ 0.48
SHMT2-203ENST00000449049 BCL2L13Q9BXK5 485 aa18.04■□□□□ 0.48
SHMT2-203ENST00000449049 SUPT16HQ9Y5B9 1047 aaKnown RBP18.03■□□□□ 0.48
SHMT2-203ENST00000449049 RGPD3A6NKT7 1758 aaPredicted RBP18.03■□□□□ 0.48
SHMT2-203ENST00000449049 RGPD4Q7Z3J3 1758 aa18.03■□□□□ 0.48
SHMT2-203ENST00000449049 TCERG1O14776 1098 aaKnown RBP18.02■□□□□ 0.48
SHMT2-203ENST00000449049 DNAJC10Q8IXB1 793 aa18.02■□□□□ 0.48
SHMT2-203ENST00000449049 NECTIN2Q92692 538 aa18.02■□□□□ 0.48
SHMT2-203ENST00000449049 CACNA1FO60840 1977 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms