RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CHAF1AQ13111 956 aaPredicted RBP14.3□□□□□ -0.12
MSH6-204ENST00000445503 PPP1R42Q7Z4L9 355 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 USP25Q9UHP3 1055 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 ATP6V1DQ9Y5K8 247 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 RTL1A6NKG5 1358 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 ZKSCAN1P17029 563 aaPredicted RBP14.3□□□□□ -0.12
MSH6-204ENST00000445503 TAF7Q15545 349 aaPredicted RBP14.3□□□□□ -0.12
MSH6-204ENST00000445503 HSP90B1P14625 803 aaKnown RBP14.3□□□□□ -0.12
MSH6-204ENST00000445503 FERMT3Q86UX7 667 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 CCDC83Q8IWF9 413 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 GPT2Q8TD30 523 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 RUFY2Q8WXA3 655 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 CASTP20810 708 aaKnown RBP14.29□□□□□ -0.12
MSH6-204ENST00000445503 CPA1P15085 419 aa14.29□□□□□ -0.12
MSH6-204ENST00000445503 CHMLP26374 656 aa14.29□□□□□ -0.12
MSH6-204ENST00000445503 JAKMIP1Q96N16 626 aaKnown RBP14.29□□□□□ -0.12
MSH6-204ENST00000445503 SIL1Q9H173 461 aa14.29□□□□□ -0.12
MSH6-204ENST00000445503 ADGRB1O14514 1584 aa14.29□□□□□ -0.12
MSH6-204ENST00000445503 EYA1Q99502 592 aa14.29□□□□□ -0.12
MSH6-204ENST00000445503 MAP3K19Q56UN5 1328 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 MROH2AA6NES4 1674 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.28□□□□□ -0.12
MSH6-204ENST00000445503 EDC4Q6P2E9 1401 aaKnown RBP14.28□□□□□ -0.12
MSH6-204ENST00000445503 ARAP3Q8WWN8 1544 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 USP48Q86UV5 1035 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 NSFL1CQ9UNZ2 370 aaKnown RBP14.28□□□□□ -0.12
MSH6-204ENST00000445503 INO80Q9ULG1 1556 aaPredicted RBP14.28□□□□□ -0.12
MSH6-204ENST00000445503 NRXN1Q9ULB1 1477 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 PHAXQ9H814 394 aaKnown RBP14.28□□□□□ -0.12
MSH6-204ENST00000445503 SETBP1Q9Y6X0 1596 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 MLH3Q9UHC1 1453 aa14.28□□□□□ -0.12
MSH6-204ENST00000445503 KIAA1210Q9ULL0 1709 aa14.27□□□□□ -0.12
MSH6-204ENST00000445503 ATP8B2P98198 1209 aa14.27□□□□□ -0.12
MSH6-204ENST00000445503 STK3Q13188 491 aa14.27□□□□□ -0.12
MSH6-204ENST00000445503 PNPLA6Q8IY17 1366 aa14.27□□□□□ -0.12
MSH6-204ENST00000445503 ZNF445P59923 1031 aa14.27□□□□□ -0.12
MSH6-204ENST00000445503 PRPF40BQ6NWY9 871 aaKnown RBP14.27□□□□□ -0.12
MSH6-204ENST00000445503 CNPY2Q9Y2B0 182 aa14.27□□□□□ -0.13
MSH6-204ENST00000445503 AMOTL2Q9Y2J4 779 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 LRRC7Q96NW7 1537 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 HCLS1P14317 486 aaPredicted RBP14.26□□□□□ -0.13
MSH6-204ENST00000445503 DDIT3P35638 169 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 G3BP1Q13283 466 aaKnown RBP eCLIP14.26□□□□□ -0.137e-7■■■■□ 20.1
MSH6-204ENST00000445503 C1orf141Q5JVX7 400 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 METP08581 1390 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 GADD45BO75293 160 aaPredicted RBP14.26□□□□□ -0.13
MSH6-204ENST00000445503 PTCH1Q13635 1447 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 PI4KAP2A4QPH2 592 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 UNC5CLQ8IV45 518 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 PI4KAP1Q8N8J0 262 aa14.26□□□□□ -0.13
MSH6-204ENST00000445503 OFD1O75665 1012 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 HSP90AB4PQ58FF6 505 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 RHPN1Q8TCX5 695 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 PDRG1Q9NUG6 133 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 PIK3R4Q99570 1358 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 PSME1Q06323 249 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 AACSQ86V21 672 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 FBXW7Q969H0 707 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 KIF1BPQ96EK5 621 aa14.25□□□□□ -0.13
MSH6-204ENST00000445503 TCEANC2Q96MN5 208 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 PPP1R9BQ96SB3 815 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 FSD1Q9BTV5 496 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 ZRSR1Q15695 479 aaKnown RBP14.24□□□□□ -0.13
MSH6-204ENST00000445503 CAMK4Q16566 473 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 ZNF530Q6P9A1 599 aaPredicted RBP14.24□□□□□ -0.13
MSH6-204ENST00000445503 BICD2Q8TD16 824 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 ZKSCAN5Q9Y2L8 839 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 CYP46A1Q9Y6A2 500 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 GIMAP6Q6P9H5 292 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 ZMYND15Q9H091 742 aa14.24□□□□□ -0.13
MSH6-204ENST00000445503 VWDEQ8N2E2 1590 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 MPRIPQ6WCQ1 1025 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 NECAB1Q8N987 351 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 PRR36Q9H6K5 1346 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 CEBPZQ03701 1054 aaKnown RBP14.23□□□□□ -0.13
MSH6-204ENST00000445503 TTC12Q9H892 705 aaPredicted RBP14.23□□□□□ -0.13
MSH6-204ENST00000445503 KIDINS220Q9ULH0 1771 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 H3BQV1 296 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 IFFO2Q5TF58 517 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 LARP1BQ659C4 914 aaKnown RBP14.23□□□□□ -0.13
MSH6-204ENST00000445503 SHPRHQ149N8 1683 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 CCDC8Q9H0W5 538 aaPredicted RBP14.23□□□□□ -0.13
MSH6-204ENST00000445503 LIMCH1Q9UPQ0 1083 aa14.23□□□□□ -0.13
MSH6-204ENST00000445503 STX6O43752 255 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 ZNF330Q9Y3S2 320 aaPredicted RBP14.22□□□□□ -0.13
MSH6-204ENST00000445503 GOLGA6L6A8MZA4 724 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 CHPF2Q9P2E5 772 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 ZDHHC9Q9Y397 364 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 BTBD11A6QL63 1104 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 ADCY5O95622 1261 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 DNAAF4Q8WXU2 420 aa14.22□□□□□ -0.13
MSH6-204ENST00000445503 CSB-PGBD3P0DP91 1061 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 AK2P54819 239 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 RIC3Q7Z5B4 369 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 PA2G4Q9UQ80 394 aaKnown RBP14.21□□□□□ -0.13
MSH6-204ENST00000445503 DEPDC5O75140 1603 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 CCDC183Q5T5S1 534 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 C17orf53Q8N3J3 647 aaPredicted RBP14.21□□□□□ -0.13
MSH6-204ENST00000445503 CHMP4AQ9BY43 222 aa14.21□□□□□ -0.13
MSH6-204ENST00000445503 BOLA2Q9H3K6 86 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms