RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 INTS3Q68E01 1043 aaKnown RBP16.08■□□□□ 0.16
COL28A1-204ENST00000444268 BABAM1Q9NWV8 329 aa16.08■□□□□ 0.16
COL28A1-204ENST00000444268 COL5A2P05997 1499 aaPredicted RBP16.08■□□□□ 0.16
COL28A1-204ENST00000444268 STRN4Q9NRL3 753 aa16.07■□□□□ 0.16
COL28A1-204ENST00000444268 NLRP2Q9NX02 1062 aa16.07■□□□□ 0.16
COL28A1-204ENST00000444268 COL14A1Q05707 1796 aaKnown RBP16.06■□□□□ 0.16
COL28A1-204ENST00000444268 CHD1LQ86WJ1 897 aa16.06■□□□□ 0.16
COL28A1-204ENST00000444268 BTG4Q9NY30 223 aa16.06■□□□□ 0.16
COL28A1-204ENST00000444268 TSPYL4Q9UJ04 414 aa16.05■□□□□ 0.16
COL28A1-204ENST00000444268 FAM208AQ9UK61 1670 aaKnown RBP16.05■□□□□ 0.16
COL28A1-204ENST00000444268 NCAPD2Q15021 1401 aa16.05■□□□□ 0.16
COL28A1-204ENST00000444268 GNAT3A8MTJ3 354 aa16.05■□□□□ 0.16
COL28A1-204ENST00000444268 EIF5BO60841 1220 aaKnown RBP16.05■□□□□ 0.16
COL28A1-204ENST00000444268 TBC1D32Q96NH3 1257 aa16.05■□□□□ 0.16
COL28A1-204ENST00000444268 LRP6O75581 1613 aa16.05■□□□□ 0.16
COL28A1-204ENST00000444268 PLCH1Q4KWH8 1693 aa16.04■□□□□ 0.16
COL28A1-204ENST00000444268 LARP1Q6PKG0 1096 aaKnown RBP16.04■□□□□ 0.16
COL28A1-204ENST00000444268 MAP3K5Q99683 1374 aa16.04■□□□□ 0.16
COL28A1-204ENST00000444268 WDR17Q8IZU2 1322 aa16.04■□□□□ 0.16
COL28A1-204ENST00000444268 CACNA1FO60840 1977 aa16.04■□□□□ 0.16
COL28A1-204ENST00000444268 TOM1L2Q6ZVM7 507 aa16.03■□□□□ 0.16
COL28A1-204ENST00000444268 RGS12O14924 1447 aa16.02■□□□□ 0.16
COL28A1-204ENST00000444268 SEC24BO95487 1268 aa16.02■□□□□ 0.15
COL28A1-204ENST00000444268 EVA1CP58658 441 aa16.02■□□□□ 0.15
COL28A1-204ENST00000444268 BMP2KLQ5H9B9 411 aa16.02■□□□□ 0.15
COL28A1-204ENST00000444268 RPAP2Q8IXW5 612 aaPredicted RBP16.01■□□□□ 0.15
COL28A1-204ENST00000444268 CHMP4AQ9BY43 222 aa16.01■□□□□ 0.15
COL28A1-204ENST00000444268 MEGF6O75095 1541 aa16■□□□□ 0.15
COL28A1-204ENST00000444268 STK31Q9BXU1 1019 aa16■□□□□ 0.15
COL28A1-204ENST00000444268 NRAPQ86VF7 1730 aa16■□□□□ 0.15
COL28A1-204ENST00000444268 C8orf37Q96NL8 207 aa16■□□□□ 0.15
COL28A1-204ENST00000444268 LNPKQ9C0E8 428 aa16■□□□□ 0.15
COL28A1-204ENST00000444268 SPATA31A6Q5VVP1 1343 aa15.99■□□□□ 0.15
COL28A1-204ENST00000444268 CCT4P50991 539 aaKnown RBP15.99■□□□□ 0.15
COL28A1-204ENST00000444268 ANKRD45Q5TZF3 282 aa15.99■□□□□ 0.15
COL28A1-204ENST00000444268 N4BP2Q86UW6 1770 aaPredicted RBP15.98■□□□□ 0.15
COL28A1-204ENST00000444268 SLC4A2P04920 1241 aa15.98■□□□□ 0.15
COL28A1-204ENST00000444268 CCDC30Q5VVM6 783 aa15.98■□□□□ 0.15
COL28A1-204ENST00000444268 KRT24Q2M2I5 525 aa15.98■□□□□ 0.15
COL28A1-204ENST00000444268 ANKRD44Q8N8A2 993 aa15.98■□□□□ 0.15
COL28A1-204ENST00000444268 C1orf115Q9H7X2 142 aa15.98■□□□□ 0.15
COL28A1-204ENST00000444268 SLIT2O94813 1529 aa15.97■□□□□ 0.15
COL28A1-204ENST00000444268 ATP10DQ9P241 1426 aa15.97■□□□□ 0.15
COL28A1-204ENST00000444268 SIRT2Q8IXJ6 389 aa15.97■□□□□ 0.15
COL28A1-204ENST00000444268 CARD10Q9BWT7 1032 aa15.97■□□□□ 0.15
COL28A1-204ENST00000444268 DCTPP1Q9H773 170 aa15.97■□□□□ 0.15
COL28A1-204ENST00000444268 HMMRO75330 724 aa15.96■□□□□ 0.15
COL28A1-204ENST00000444268 TAF7Q15545 349 aaPredicted RBP15.96■□□□□ 0.15
COL28A1-204ENST00000444268 RAPGEF4Q8WZA2 1011 aa15.96■□□□□ 0.15
COL28A1-204ENST00000444268 C22orf23Q9BZE7 217 aa15.96■□□□□ 0.15
COL28A1-204ENST00000444268 PXDNLA1KZ92 1463 aa15.96■□□□□ 0.15
COL28A1-204ENST00000444268 SLC4A3P48751 1232 aa15.95■□□□□ 0.14
COL28A1-204ENST00000444268 NGLY1Q96IV0 654 aa15.95■□□□□ 0.14
COL28A1-204ENST00000444268 TATP17735 454 aaPredicted RBP15.95■□□□□ 0.14
COL28A1-204ENST00000444268 NWD2Q9ULI1 1742 aa15.94■□□□□ 0.14
COL28A1-204ENST00000444268 PLEKHO1Q53GL0 409 aaPredicted RBP15.94■□□□□ 0.14
COL28A1-204ENST00000444268 ZNF530Q6P9A1 599 aaPredicted RBP15.94■□□□□ 0.14
COL28A1-204ENST00000444268 CEMIPQ8WUJ3 1361 aa15.94■□□□□ 0.14
COL28A1-204ENST00000444268 OVOS2A0A0G2JMS6 1433 aa15.94■□□□□ 0.14
COL28A1-204ENST00000444268 BCL9LQ86UU0 1499 aa15.93■□□□□ 0.14
COL28A1-204ENST00000444268 MFAP1P55081 439 aaKnown RBP15.93■□□□□ 0.14
COL28A1-204ENST00000444268 MEX3CQ5U5Q3 659 aaKnown RBP15.93■□□□□ 0.14
COL28A1-204ENST00000444268 CEP85Q6P2H3 762 aa15.93■□□□□ 0.14
COL28A1-204ENST00000444268 MIS18AQ9NYP9 233 aa15.93■□□□□ 0.14
COL28A1-204ENST00000444268 HOXB7P09629 217 aa15.92■□□□□ 0.14
COL28A1-204ENST00000444268 DEKP35659 375 aaKnown RBP15.92■□□□□ 0.14
COL28A1-204ENST00000444268 AMOTQ4VCS5 1084 aa15.92■□□□□ 0.14
COL28A1-204ENST00000444268 IL17REQ8NFR9 667 aa15.92■□□□□ 0.14
COL28A1-204ENST00000444268 KDM3BQ7LBC6 1761 aa15.92■□□□□ 0.14
COL28A1-204ENST00000444268 RBM25P49756 843 aaKnown RBP15.92■□□□□ 0.14
COL28A1-204ENST00000444268 PKD1L3Q7Z443 1732 aa15.92■□□□□ 0.14
COL28A1-204ENST00000444268 PARP4Q9UKK3 1724 aaKnown RBP15.92■□□□□ 0.14
COL28A1-204ENST00000444268 GNAI3P08754 354 aa15.91■□□□□ 0.14
COL28A1-204ENST00000444268 IL2RBP14784 551 aa15.91■□□□□ 0.14
COL28A1-204ENST00000444268 UNC5CLQ8IV45 518 aa15.91■□□□□ 0.14
COL28A1-204ENST00000444268 FLIIQ13045 1269 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 NFKBIBQ15653 356 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 FNBP4Q8N3X1 1017 aaPredicted RBP15.9■□□□□ 0.14
COL28A1-204ENST00000444268 LGR6Q9HBX8 967 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 CCDC9Q9Y3X0 531 aaKnown RBP15.9■□□□□ 0.14
COL28A1-204ENST00000444268 SPATA31A1Q5TZJ5 1347 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 AKAP4Q5JQC9 854 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 MPRIPQ6WCQ1 1025 aa15.9■□□□□ 0.14
COL28A1-204ENST00000444268 DISP2A7MBM2 1401 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 SPATA31A5Q5VU36 1347 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 SPATA31A7Q8IWB4 1347 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 SHANK3Q9BYB0 1731 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 CYP27B1O15528 508 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 CDC45O75419 566 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 GNAI2P04899 355 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 FKBP5Q13451 457 aaPredicted RBP15.89■□□□□ 0.13
COL28A1-204ENST00000444268 FBXO41Q8TF61 875 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 MEIS3Q99687 375 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 USP21Q9UK80 565 aa15.89■□□□□ 0.13
COL28A1-204ENST00000444268 AFF2P51816 1311 aa15.88■□□□□ 0.13
COL28A1-204ENST00000444268 WNK3Q9BYP7 1800 aa15.88■□□□□ 0.13
COL28A1-204ENST00000444268 C1orf141Q5JVX7 400 aa15.88■□□□□ 0.13
COL28A1-204ENST00000444268 SLC4A10Q6U841 1118 aa15.88■□□□□ 0.13
COL28A1-204ENST00000444268 TBC1D2Q9BYX2 928 aa15.88■□□□□ 0.13
COL28A1-204ENST00000444268 SPG7Q9UQ90 795 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms