RNA–Protein interactions for RNA: ENST00000443981.5

PTPRN-207, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 5

Gene PTPRN, Length 1,051 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-207ENST00000443981 PTGER2P43116 358 aa16■□□□□ 0.15
PTPRN-207ENST00000443981 ATG3Q9NT62 314 aa16■□□□□ 0.15
PTPRN-207ENST00000443981 COL3A1P02461 1466 aaPredicted RBP15.99■□□□□ 0.15
PTPRN-207ENST00000443981 KDM6AO15550 1401 aaPredicted RBP15.99■□□□□ 0.15
PTPRN-207ENST00000443981 UBR3Q6ZT12 1888 aa15.99■□□□□ 0.15
PTPRN-207ENST00000443981 ZNF831Q5JPB2 1677 aa15.99■□□□□ 0.15
PTPRN-207ENST00000443981 COL24A1Q17RW2 1714 aa15.98■□□□□ 0.15
PTPRN-207ENST00000443981 NFATC2IPQ8NCF5 419 aa15.98■□□□□ 0.15
PTPRN-207ENST00000443981 ARXQ96QS3 562 aa15.98■□□□□ 0.15
PTPRN-207ENST00000443981 RBM42Q9BTD8 480 aaKnown RBP15.98■□□□□ 0.15
PTPRN-207ENST00000443981 MTHFSDQ2M296 383 aaKnown RBP15.97■□□□□ 0.15
PTPRN-207ENST00000443981 COL23A1Q86Y22 540 aaPredicted RBP15.97■□□□□ 0.15
PTPRN-207ENST00000443981 GAS2L2Q8NHY3 880 aa15.97■□□□□ 0.15
PTPRN-207ENST00000443981 SGIP1Q9BQI5 828 aa15.97■□□□□ 0.15
PTPRN-207ENST00000443981 ZEB1P37275 1124 aaPredicted RBP15.96■□□□□ 0.15
PTPRN-207ENST00000443981 RNMTO43148 476 aaKnown RBP15.95■□□□□ 0.14
PTPRN-207ENST00000443981 LINC00116Q8NCU8 138 aa15.95■□□□□ 0.14
PTPRN-207ENST00000443981 SLC52A2Q9HAB3 445 aa15.95■□□□□ 0.14
PTPRN-207ENST00000443981 U2AF1L5P0DN76 240 aaPredicted RBP15.94■□□□□ 0.14
PTPRN-207ENST00000443981 SSFA2P28290 1259 aa15.94■□□□□ 0.14
PTPRN-207ENST00000443981 U2AF1Q01081 240 aaKnown RBP eCLIP15.94■□□□□ 0.14
PTPRN-207ENST00000443981 SYT17Q9BSW7 474 aa15.94■□□□□ 0.14
PTPRN-207ENST00000443981 FHDC1Q9C0D6 1143 aaPredicted RBP15.94■□□□□ 0.14
PTPRN-207ENST00000443981 LGR6Q9HBX8 967 aa15.94■□□□□ 0.14
PTPRN-207ENST00000443981 GNAT3A8MTJ3 354 aa15.93■□□□□ 0.14
PTPRN-207ENST00000443981 GNPATO15228 680 aa15.93■□□□□ 0.14
PTPRN-207ENST00000443981 ITPK1Q13572 414 aa15.93■□□□□ 0.14
PTPRN-207ENST00000443981 RC3H1Q5TC82 1133 aaKnown RBP15.93■□□□□ 0.14
PTPRN-207ENST00000443981 COL5A3P25940 1745 aaPredicted RBP15.92■□□□□ 0.14
PTPRN-207ENST00000443981 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.92■□□□□ 0.14
PTPRN-207ENST00000443981 PTCD1O75127 700 aaKnown RBP15.92■□□□□ 0.14
PTPRN-207ENST00000443981 FCHSD2O94868 740 aa15.92■□□□□ 0.14
PTPRN-207ENST00000443981 PHF14O94880 888 aa15.92■□□□□ 0.14
PTPRN-207ENST00000443981 NEFMP07197 916 aa15.92■□□□□ 0.14
PTPRN-207ENST00000443981 PRKAR2BP31323 418 aa15.92■□□□□ 0.14
PTPRN-207ENST00000443981 DDX10Q13206 875 aaKnown RBP15.92■□□□□ 0.14
PTPRN-207ENST00000443981 RTCBQ9Y3I0 505 aaKnown RBP15.92■□□□□ 0.14
PTPRN-207ENST00000443981 ADAMTS7Q9UKP4 1686 aa15.92■□□□□ 0.14
PTPRN-207ENST00000443981 RALBP1Q15311 655 aa15.91■□□□□ 0.14
PTPRN-207ENST00000443981 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
PTPRN-207ENST00000443981 MAP3K5Q99683 1374 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 MYH14Q7Z406 1995 aaKnown RBP15.9■□□□□ 0.14
PTPRN-207ENST00000443981 TEFQ10587 303 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 TRAPPC3LQ5T215 181 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 KLHL34Q8N239 644 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 SLC4A9Q96Q91 983 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 CNTNAP4Q9C0A0 1308 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 MRC1P22897 1456 aa15.9■□□□□ 0.14
PTPRN-207ENST00000443981 ADRA2BP18089 450 aa15.89■□□□□ 0.13
PTPRN-207ENST00000443981 PNNQ9H307 717 aaKnown RBP15.89■□□□□ 0.13
PTPRN-207ENST00000443981 CICQ96RK0 1608 aaPredicted RBP15.88■□□□□ 0.13
PTPRN-207ENST00000443981 RPS6KA4O75676 772 aa15.88■□□□□ 0.13
PTPRN-207ENST00000443981 MSL1Q68DK7 614 aa15.88■□□□□ 0.13
PTPRN-207ENST00000443981 TTC5Q8N0Z6 440 aa15.88■□□□□ 0.13
PTPRN-207ENST00000443981 RTF1Q92541 710 aaKnown RBP15.87■□□□□ 0.13
PTPRN-207ENST00000443981 PHACTR3Q96KR7 559 aa15.87■□□□□ 0.13
PTPRN-207ENST00000443981 TJP1Q07157 1748 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 SIPA1L3O60292 1781 aaPredicted RBP15.86■□□□□ 0.13
PTPRN-207ENST00000443981 RFC4P35249 363 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 SLC39A6Q13433 755 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 AMIGO3Q86WK7 504 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 VSIG10Q8N0Z9 540 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 IL17REQ8NFR9 667 aa15.86■□□□□ 0.13
PTPRN-207ENST00000443981 CRKLP46109 303 aaKnown RBP15.85■□□□□ 0.13
PTPRN-207ENST00000443981 CHD4Q14839 1912 aa15.85■□□□□ 0.13
PTPRN-207ENST00000443981 UBR2Q8IWV8 1755 aa15.85■□□□□ 0.13
PTPRN-207ENST00000443981 HTATSF1O43719 755 aaKnown RBP15.84■□□□□ 0.13
PTPRN-207ENST00000443981 SMIM5Q71RC9 77 aa15.84■□□□□ 0.13
PTPRN-207ENST00000443981 NLGN1Q8N2Q7 840 aa15.84■□□□□ 0.13
PTPRN-207ENST00000443981 ARHGEF1Q92888 912 aaKnown RBP15.84■□□□□ 0.13
PTPRN-207ENST00000443981 DLG5Q8TDM6 1919 aa15.84■□□□□ 0.13
PTPRN-207ENST00000443981 DNAJC10Q8IXB1 793 aa15.83■□□□□ 0.12
PTPRN-207ENST00000443981 TEX13AQ9BXU3 409 aaPredicted RBP15.83■□□□□ 0.12
PTPRN-207ENST00000443981 CD2APQ9Y5K6 639 aa15.83■□□□□ 0.12
PTPRN-207ENST00000443981 CEMIPQ8WUJ3 1361 aa15.83■□□□□ 0.12
PTPRN-207ENST00000443981 GPR162Q16538 588 aa15.82■□□□□ 0.12
PTPRN-207ENST00000443981 ZNF790Q6PG37 636 aa15.82■□□□□ 0.12
PTPRN-207ENST00000443981 CCDC87Q9NVE4 849 aa15.82■□□□□ 0.12
PTPRN-207ENST00000443981 MYBBP1AQ9BQG0 1328 aaKnown RBP15.82■□□□□ 0.12
PTPRN-207ENST00000443981 BTBD11A6QL63 1104 aa15.81■□□□□ 0.12
PTPRN-207ENST00000443981 STARD3NLO95772 234 aa15.81■□□□□ 0.12
PTPRN-207ENST00000443981 C4AP0C0L4 1744 aa15.81■□□□□ 0.12
PTPRN-207ENST00000443981 KCPQ6ZWJ8 1503 aa15.81■□□□□ 0.12
PTPRN-207ENST00000443981 MAPK8IP3Q9UPT6 1336 aa15.81■□□□□ 0.12
PTPRN-207ENST00000443981 CYP19A1P11511 503 aaPredicted RBP15.8■□□□□ 0.12
PTPRN-207ENST00000443981 INTS5Q6P9B9 1019 aaKnown RBP15.8■□□□□ 0.12
PTPRN-207ENST00000443981 FMNL2Q96PY5 1086 aa15.8■□□□□ 0.12
PTPRN-207ENST00000443981 ZPR1O75312 459 aa15.79■□□□□ 0.12
PTPRN-207ENST00000443981 YY1P25490 414 aa15.79■□□□□ 0.12
PTPRN-207ENST00000443981 PELP1Q8IZL8 1130 aaKnown RBP15.79■□□□□ 0.12
PTPRN-207ENST00000443981 HEG1Q9ULI3 1381 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 MMP10P09238 476 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 GYS1P13807 737 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 MCM10Q7L590 875 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 NPM2Q86SE8 214 aaKnown RBP15.78■□□□□ 0.12
PTPRN-207ENST00000443981 NLGN2Q8NFZ4 835 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 ZNF496Q96IT1 587 aaPredicted RBP15.78■□□□□ 0.12
PTPRN-207ENST00000443981 PARP3Q9Y6F1 533 aa15.78■□□□□ 0.12
PTPRN-207ENST00000443981 PLEKHF1Q96S99 279 aa15.77■□□□□ 0.12
PTPRN-207ENST00000443981 SOS1Q07889 1333 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms