RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 PRXQ9BXM0 1461 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 CCDC172P0C7W6 258 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 U2AF2P26368 475 aaKnown RBP eCLIP3.37□□□□□ -1.87
LIG4-203ENST00000442234 AMPHP49418 695 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 SETQ01105 290 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 MAP2K1Q02750 393 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 GABPB1Q06547 395 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 SEMA3FQ13275 785 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 SKOR2Q2VWA4 1001 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 TMC2Q8TDI7 906 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 RASSF4Q9H2L5 321 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 RCAN3Q9UKA8 241 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 MRVI1Q9Y6F6 885 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 TONSLQ96HA7 1378 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 EP400Q96L91 3159 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 FAM83GA6ND36 823 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 SPDYE16A6NNV3 312 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 EXOC5O00471 708 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 FCHSD2O94868 740 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 ATP2B3Q16720 1220 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.37□□□□□ -1.87
LIG4-203ENST00000442234 NCAPGQ9BPX3 1015 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 RBM28Q9NW13 759 aaKnown RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 CCDC39Q9UFE4 941 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 NPHP3Q7Z494 1330 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 KIF15Q9NS87 1388 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 PTPRTO14522 1441 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 SHANK2Q9UPX8 1470 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 HSCBQ8IWL3 235 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 DISP1Q96F81 1524 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 NOM1Q5C9Z4 860 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 PIK3R5Q8WYR1 880 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 BEGAINQ9BUH8 593 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 DIAPH3Q9NSV4 1193 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 DDX49Q9Y6V7 483 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 KTN1Q86UP2 1357 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 MAP1BP46821 2468 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 ONECUT3O60422 494 aaPredicted RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 MFAP1P55081 439 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 NBPF20Q3BBV1 942 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 CDCA8Q53HL2 280 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 LRCH2Q5VUJ6 765 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 C10orf67Q8IYJ2 551 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 SLAIN1Q8ND83 568 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 MYRIPQ8NFW9 859 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 FBXW7Q969H0 707 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 CALR3Q96L12 384 aaKnown RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 PRIMPOLQ96LW4 560 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 DRC1Q96MC2 740 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 FEZ1Q99689 392 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 PANK3Q9H999 370 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 UHRF1BP1LA0JNW5 1464 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 TTC37Q6PGP7 1564 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 RIMBP2O15034 1052 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 ZNF513Q8N8E2 541 aaPredicted RBP3.36□□□□□ -1.87
LIG4-203ENST00000442234 MNS1Q8NEH6 495 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 SYT17Q9BSW7 474 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 OGFRQ9NZT2 677 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 ZKSCAN5Q9Y2L8 839 aa3.36□□□□□ -1.87
LIG4-203ENST00000442234 GPRASP1Q5JY77 1395 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 MROH2AA6NES4 1674 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 LTBP4Q8N2S1 1624 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 SMG6Q86US8 1419 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 H0YHG0 523 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 ZNF853P0CG23 659 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 GTF2F1P35269 517 aaKnown RBP eCLIP3.35□□□□□ -1.872e-26■■■■■ 105.6
LIG4-203ENST00000442234 SARNPP82979 210 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 ICE2Q659A1 982 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 PAIP2Q9BPZ3 127 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 TERF2IPQ9NYB0 399 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CWC15Q9P013 229 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 BDP1A6H8Y1 2624 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 KIAA0100Q14667 2235 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 RAPGEF6Q8TEU7 1601 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CEP170BQ9Y4F5 1589 aaPredicted RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 HSP90AB1P08238 724 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 BIRC2Q13490 618 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 TEX35Q5T0J7 233 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 RBM26Q5T8P6 1007 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 NLGN2Q8NFZ4 835 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CWC22Q9HCG8 908 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 ABT1Q9ULW3 272 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 NOL7Q9UMY1 257 aaKnown RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 LAMC1P11047 1609 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 NINLQ9Y2I6 1382 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 MCM5P33992 734 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 PPP2R5AQ15172 486 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CCDC184Q52MB2 194 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CT47A1Q5JQC4 288 aaPredicted RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 PPP1R15BQ5SWA1 713 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CASC1Q6TDU7 716 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 CENPQQ7L2Z9 268 aaPredicted RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 CCDC91Q7Z6B0 441 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.35□□□□□ -1.87
LIG4-203ENST00000442234 SLC4A5Q9BY07 1137 aa3.35□□□□□ -1.87
LIG4-203ENST00000442234 TTC28Q96AY4 2481 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 HS1BP3Q53T59 392 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 LCE2DQ5TA82 110 aaPredicted RBP3.34□□□□□ -1.87
LIG4-203ENST00000442234 GPR153Q6NV75 609 aa3.34□□□□□ -1.87
LIG4-203ENST00000442234 RNF217Q8TC41 542 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms