RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 RTN4Q9NQC3 1192 aaKnown RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 USP35Q9P2H5 1018 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 B4GALNT3Q6L9W6 998 aa10.31□□□□□ -0.76
CCDC39-201ENST00000442201 NOP58Q9Y2X3 529 aaKnown RBP10.31□□□□□ -0.76
CCDC39-201ENST00000442201 CYP27B1O15528 508 aa10.3□□□□□ -0.76
CCDC39-201ENST00000442201 PANK1Q8TE04 598 aa10.3□□□□□ -0.76
CCDC39-201ENST00000442201 DCAF5Q96JK2 942 aa10.3□□□□□ -0.76
CCDC39-201ENST00000442201 PCDH11XQ9BZA7 1347 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 PCDH11YQ9BZA8 1340 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 BTBD11A6QL63 1104 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 ATF7IPQ6VMQ6 1270 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 FTSJ3Q8IY81 847 aaKnown RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 MRPL50Q8N5N7 158 aaKnown RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 NOB1Q9ULX3 412 aaKnown RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 SOS1Q07889 1333 aaPredicted RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 PDE4CQ08493 712 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 CLUAP1Q96AJ1 413 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 TCERG1O14776 1098 aaKnown RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 AAMPQ13685 434 aa10.29□□□□□ -0.76
CCDC39-201ENST00000442201 DZIP1LQ8IYY4 767 aaKnown RBP10.29□□□□□ -0.76
CCDC39-201ENST00000442201 TRIM27P14373 513 aa10.28□□□□□ -0.76
CCDC39-201ENST00000442201 COG6Q9Y2V7 657 aa10.28□□□□□ -0.76
CCDC39-201ENST00000442201 KDM6AO15550 1401 aaPredicted RBP10.28□□□□□ -0.76
CCDC39-201ENST00000442201 ARHGAP45Q92619 1136 aa10.27□□□□□ -0.76
CCDC39-201ENST00000442201 SLC52A2Q9HAB3 445 aa10.27□□□□□ -0.76
CCDC39-201ENST00000442201 TNNQ9UQP3 1299 aa10.27□□□□□ -0.76
CCDC39-201ENST00000442201 RLBP1P12271 317 aa10.27□□□□□ -0.77
CCDC39-201ENST00000442201 PDIA4P13667 645 aaKnown RBP10.27□□□□□ -0.77
CCDC39-201ENST00000442201 EIF4A1P60842 406 aaKnown RBP10.27□□□□□ -0.77
CCDC39-201ENST00000442201 SPATA31A6Q5VVP1 1343 aa10.27□□□□□ -0.77
CCDC39-201ENST00000442201 DDX54Q8TDD1 881 aaKnown RBP10.27□□□□□ -0.77
CCDC39-201ENST00000442201 CHMP4AQ9BY43 222 aa10.27□□□□□ -0.77
CCDC39-201ENST00000442201 STK31Q9BXU1 1019 aa10.26□□□□□ -0.77
CCDC39-201ENST00000442201 PKD1L3Q7Z443 1732 aa10.26□□□□□ -0.77
CCDC39-201ENST00000442201 PARP4Q9UKK3 1724 aaKnown RBP10.26□□□□□ -0.77
CCDC39-201ENST00000442201 CCDC30Q5VVM6 783 aa10.26□□□□□ -0.77
CCDC39-201ENST00000442201 NFATC2IPQ8NCF5 419 aa10.26□□□□□ -0.77
CCDC39-201ENST00000442201 KCNQ3O43525 872 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 HOXB7P09629 217 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 HSPA1LP34931 641 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 CABP4P57796 275 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 NGLY1Q96IV0 654 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 API5Q9BZZ5 524 aaKnown RBP10.25□□□□□ -0.77
CCDC39-201ENST00000442201 SLC4A2P04920 1241 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 MVPQ14764 893 aaKnown RBP10.25□□□□□ -0.77
CCDC39-201ENST00000442201 NKX1-1Q15270 411 aaPredicted RBP10.25□□□□□ -0.77
CCDC39-201ENST00000442201 CDCA7Q9BWT1 371 aaPredicted RBP10.25□□□□□ -0.77
CCDC39-201ENST00000442201 THRAP3Q9Y2W1 955 aaKnown RBP10.25□□□□□ -0.77
CCDC39-201ENST00000442201 SLIT2O94813 1529 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 ADAMTS7Q9UKP4 1686 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 C8orf37Q96NL8 207 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 SPATA31A1Q5TZJ5 1347 aa10.25□□□□□ -0.77
CCDC39-201ENST00000442201 DISP2A7MBM2 1401 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 HDGFL1Q5TGJ6 251 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 CCDC9Q9Y3X0 531 aaKnown RBP10.24□□□□□ -0.77
CCDC39-201ENST00000442201 ERVV-2B6SEH9 535 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 EXOC5O00471 708 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 ZNF790Q6PG37 636 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 UNC5CLQ8IV45 518 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 ITPRIPQ8IWB1 547 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 DDX19BQ9UMR2 479 aa10.24□□□□□ -0.77
CCDC39-201ENST00000442201 PTPRCP08575 1304 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 TTC5Q8N0Z6 440 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 TMEM57Q8N5G2 664 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 SPATA31A5Q5VU36 1347 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 SPATA31A7Q8IWB4 1347 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 PLCH1Q4KWH8 1693 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 SLC39A6Q13433 755 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 VSIG10Q8N0Z9 540 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 NECTIN2Q92692 538 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 MRC1P22897 1456 aa10.23□□□□□ -0.77
CCDC39-201ENST00000442201 GIGYF1O75420 1035 aaPredicted RBP10.22□□□□□ -0.77
CCDC39-201ENST00000442201 EIF2S2P20042 333 aaKnown RBP10.22□□□□□ -0.77
CCDC39-201ENST00000442201 NBR1Q14596 966 aa10.22□□□□□ -0.77
CCDC39-201ENST00000442201 FNBP4Q8N3X1 1017 aaPredicted RBP10.22□□□□□ -0.77
CCDC39-201ENST00000442201 HEG1Q9ULI3 1381 aa10.22□□□□□ -0.77
CCDC39-201ENST00000442201 ABCC4O15439 1325 aa10.22□□□□□ -0.77
CCDC39-201ENST00000442201 KDM3BQ7LBC6 1761 aa10.21□□□□□ -0.77
CCDC39-201ENST00000442201 RTL5Q5HYW3 569 aaPredicted RBP10.21□□□□□ -0.77
CCDC39-201ENST00000442201 CHMP4BQ9H444 224 aaKnown RBP10.21□□□□□ -0.77
CCDC39-201ENST00000442201 SCN11AQ9UI33 1791 aa10.21□□□□□ -0.78
CCDC39-201ENST00000442201 RBM10P98175 930 aaKnown RBP10.21□□□□□ -0.78
CCDC39-201ENST00000442201 DDB1Q16531 1140 aa10.21□□□□□ -0.78
CCDC39-201ENST00000442201 MEX3CQ5U5Q3 659 aaKnown RBP10.21□□□□□ -0.78
CCDC39-201ENST00000442201 BARGINQ6ZT62 677 aa10.21□□□□□ -0.78
CCDC39-201ENST00000442201 NRAPQ86VF7 1730 aa10.21□□□□□ -0.78
CCDC39-201ENST00000442201 VPS72Q15906 364 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 G2E3Q7L622 706 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 ZNF496Q96IT1 587 aaPredicted RBP10.2□□□□□ -0.78
CCDC39-201ENST00000442201 FMNL2Q96PY5 1086 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 NWD2Q9ULI1 1742 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 BCL9LQ86UU0 1499 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 FLIIQ13045 1269 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 LRP6O75581 1613 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 TNS2Q63HR2 1409 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 TMOD3Q9NYL9 352 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 DBF4Q9UBU7 674 aaPredicted RBP10.2□□□□□ -0.78
CCDC39-201ENST00000442201 USP21Q9UK80 565 aa10.2□□□□□ -0.78
CCDC39-201ENST00000442201 FKBP5Q13451 457 aaPredicted RBP10.19□□□□□ -0.78
CCDC39-201ENST00000442201 CHPF2Q9P2E5 772 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms