RNA–Protein interactions for RNA: ENST00000442010.2

HMGB3P22-201, Transcript of high mobility group box 3 pseudogene 22, humanhuman

TSL 2 BASIC

Gene HMGB3P22, Length 597 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P22-201ENST00000442010 ITPK1Q13572 414 aa25.58■■□□□ 1.69
HMGB3P22-201ENST00000442010 C1orf141Q5JVX7 400 aa25.58■■□□□ 1.69
HMGB3P22-201ENST00000442010 AMIGO3Q86WK7 504 aa25.58■■□□□ 1.69
HMGB3P22-201ENST00000442010 LINC00116Q8NCU8 138 aa25.58■■□□□ 1.69
HMGB3P22-201ENST00000442010 ADAMTS7Q9UKP4 1686 aa25.58■■□□□ 1.68
HMGB3P22-201ENST00000442010 MAP3K5Q99683 1374 aa25.57■■□□□ 1.68
HMGB3P22-201ENST00000442010 SLC4A9Q96Q91 983 aa25.56■■□□□ 1.68
HMGB3P22-201ENST00000442010 ATP6V1AP38606 617 aa25.55■■□□□ 1.68
HMGB3P22-201ENST00000442010 CABP4P57796 275 aa25.55■■□□□ 1.68
HMGB3P22-201ENST00000442010 AKAP4Q5JQC9 854 aa25.55■■□□□ 1.68
HMGB3P22-201ENST00000442010 FLAD1Q8NFF5 587 aa25.55■■□□□ 1.68
HMGB3P22-201ENST00000442010 MYH14Q7Z406 1995 aaKnown RBP25.54■■□□□ 1.68
HMGB3P22-201ENST00000442010 POLD1P28340 1107 aa25.53■■□□□ 1.68
HMGB3P22-201ENST00000442010 AK7Q96M32 723 aa25.53■■□□□ 1.68
HMGB3P22-201ENST00000442010 MTHFSDQ2M296 383 aaKnown RBP25.52■■□□□ 1.68
HMGB3P22-201ENST00000442010 NFATC2IPQ8NCF5 419 aa25.52■■□□□ 1.68
HMGB3P22-201ENST00000442010 MRC1P22897 1456 aa25.52■■□□□ 1.68
HMGB3P22-201ENST00000442010 CICQ96RK0 1608 aaPredicted RBP25.52■■□□□ 1.68
HMGB3P22-201ENST00000442010 MSH5O43196 834 aa25.51■■□□□ 1.67
HMGB3P22-201ENST00000442010 PPP2R1AP30153 589 aa25.5■■□□□ 1.67
HMGB3P22-201ENST00000442010 SMIM5Q71RC9 77 aa25.5■■□□□ 1.67
HMGB3P22-201ENST00000442010 TJP1Q07157 1748 aa25.49■■□□□ 1.67
HMGB3P22-201ENST00000442010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.49■■□□□ 1.67
HMGB3P22-201ENST00000442010 SSFA2P28290 1259 aa25.49■■□□□ 1.67
HMGB3P22-201ENST00000442010 LGR6Q9HBX8 967 aa25.49■■□□□ 1.67
HMGB3P22-201ENST00000442010 UTRNP46939 3433 aa25.48■■□□□ 1.67
HMGB3P22-201ENST00000442010 RBM42Q9BTD8 480 aaKnown RBP25.48■■□□□ 1.67
HMGB3P22-201ENST00000442010 U2SURPO15042 1029 aaKnown RBP25.47■■□□□ 1.67
HMGB3P22-201ENST00000442010 RNMTO43148 476 aaKnown RBP25.47■■□□□ 1.67
HMGB3P22-201ENST00000442010 MSL1Q68DK7 614 aa25.47■■□□□ 1.67
HMGB3P22-201ENST00000442010 PHF14O94880 888 aa25.46■■□□□ 1.67
HMGB3P22-201ENST00000442010 SLC52A2Q9HAB3 445 aa25.46■■□□□ 1.67
HMGB3P22-201ENST00000442010 GNPATO15228 680 aa25.45■■□□□ 1.66
HMGB3P22-201ENST00000442010 CFAP53Q96M91 514 aa25.45■■□□□ 1.66
HMGB3P22-201ENST00000442010 SIPA1L3O60292 1781 aaPredicted RBP25.44■■□□□ 1.66
HMGB3P22-201ENST00000442010 DCAF8L1A6NGE4 600 aa25.44■■□□□ 1.66
HMGB3P22-201ENST00000442010 RC3H1Q5TC82 1133 aaKnown RBP25.44■■□□□ 1.66
HMGB3P22-201ENST00000442010 CNTNAP4Q9C0A0 1308 aa25.43■■□□□ 1.66
HMGB3P22-201ENST00000442010 UBR2Q8IWV8 1755 aa25.43■■□□□ 1.66
HMGB3P22-201ENST00000442010 CHD4Q14839 1912 aa25.43■■□□□ 1.66
HMGB3P22-201ENST00000442010 PTCD1O75127 700 aaKnown RBP25.42■■□□□ 1.66
HMGB3P22-201ENST00000442010 C4AP0C0L4 1744 aa25.42■■□□□ 1.66
HMGB3P22-201ENST00000442010 RSPH6AQ9H0K4 717 aa25.41■■□□□ 1.66
HMGB3P22-201ENST00000442010 KCPQ6ZWJ8 1503 aa25.4■■□□□ 1.66
HMGB3P22-201ENST00000442010 KLHL34Q8N239 644 aa25.39■■□□□ 1.66
HMGB3P22-201ENST00000442010 NLGN2Q8NFZ4 835 aa25.39■■□□□ 1.66
HMGB3P22-201ENST00000442010 GAS2L2Q8NHY3 880 aa25.39■■□□□ 1.66
HMGB3P22-201ENST00000442010 PHACTR3Q96KR7 559 aa25.39■■□□□ 1.66
HMGB3P22-201ENST00000442010 RTCBQ9Y3I0 505 aaKnown RBP25.39■■□□□ 1.66
HMGB3P22-201ENST00000442010 RPS6KA4O75676 772 aa25.38■■□□□ 1.65
HMGB3P22-201ENST00000442010 NUDCQ9Y266 331 aa25.38■■□□□ 1.65
HMGB3P22-201ENST00000442010 PRKAR2BP31323 418 aa25.37■■□□□ 1.65
HMGB3P22-201ENST00000442010 SLC39A6Q13433 755 aa25.37■■□□□ 1.65
HMGB3P22-201ENST00000442010 IL17REQ8NFR9 667 aa25.37■■□□□ 1.65
HMGB3P22-201ENST00000442010 GNAT3A8MTJ3 354 aa25.36■■□□□ 1.65
HMGB3P22-201ENST00000442010 ADRA2BP18089 450 aa25.36■■□□□ 1.65
HMGB3P22-201ENST00000442010 TRAPPC3LQ5T215 181 aa25.36■■□□□ 1.65
HMGB3P22-201ENST00000442010 GOLGB1Q14789 3259 aaKnown RBP25.35■■□□□ 1.65
HMGB3P22-201ENST00000442010 CRKLP46109 303 aaKnown RBP25.35■■□□□ 1.65
HMGB3P22-201ENST00000442010 ARHGEF1Q92888 912 aaKnown RBP25.35■■□□□ 1.65
HMGB3P22-201ENST00000442010 YY1P25490 414 aa25.34■■□□□ 1.65
HMGB3P22-201ENST00000442010 CD2APQ9Y5K6 639 aa25.34■■□□□ 1.65
HMGB3P22-201ENST00000442010 CEMIPQ8WUJ3 1361 aa25.33■■□□□ 1.65
HMGB3P22-201ENST00000442010 KIF13BQ9NQT8 1826 aa25.33■■□□□ 1.65
HMGB3P22-201ENST00000442010 FCHSD2O94868 740 aa25.33■■□□□ 1.65
HMGB3P22-201ENST00000442010 U2AF1L5P0DN76 240 aaPredicted RBP25.33■■□□□ 1.65
HMGB3P22-201ENST00000442010 U2AF1Q01081 240 aaKnown RBP eCLIP25.33■■□□□ 1.65
HMGB3P22-201ENST00000442010 INTS5Q6P9B9 1019 aaKnown RBP25.32■■□□□ 1.64
HMGB3P22-201ENST00000442010 DNAJC10Q8IXB1 793 aa25.32■■□□□ 1.64
HMGB3P22-201ENST00000442010 DLG5Q8TDM6 1919 aa25.31■■□□□ 1.64
HMGB3P22-201ENST00000442010 GYS1P13807 737 aa25.29■■□□□ 1.64
HMGB3P22-201ENST00000442010 VSIG10Q8N0Z9 540 aa25.29■■□□□ 1.64
HMGB3P22-201ENST00000442010 CYP19A1P11511 503 aaPredicted RBP25.28■■□□□ 1.64
HMGB3P22-201ENST00000442010 RFC4P35249 363 aa25.28■■□□□ 1.64
HMGB3P22-201ENST00000442010 GPR162Q16538 588 aa25.28■■□□□ 1.64
HMGB3P22-201ENST00000442010 KIAA1551Q9HCM1 1747 aa25.27■■□□□ 1.64
HMGB3P22-201ENST00000442010 TEFQ10587 303 aa25.27■■□□□ 1.64
HMGB3P22-201ENST00000442010 NLGN1Q8N2Q7 840 aa25.27■■□□□ 1.64
HMGB3P22-201ENST00000442010 MMP10P09238 476 aa25.26■■□□□ 1.63
HMGB3P22-201ENST00000442010 CCDC87Q9NVE4 849 aa25.26■■□□□ 1.63
HMGB3P22-201ENST00000442010 YBX3P16989 372 aaKnown RBP eCLIP25.25■■□□□ 1.63
HMGB3P22-201ENST00000442010 DDX10Q13206 875 aaKnown RBP25.25■■□□□ 1.63
HMGB3P22-201ENST00000442010 ZNF790Q6PG37 636 aa25.25■■□□□ 1.63
HMGB3P22-201ENST00000442010 SOS1Q07889 1333 aaPredicted RBP25.24■■□□□ 1.63
HMGB3P22-201ENST00000442010 USP42Q9H9J4 1324 aaKnown RBP25.24■■□□□ 1.63
HMGB3P22-201ENST00000442010 RALBP1Q15311 655 aa25.23■■□□□ 1.63
HMGB3P22-201ENST00000442010 TTC5Q8N0Z6 440 aa25.23■■□□□ 1.63
HMGB3P22-201ENST00000442010 ZNF496Q96IT1 587 aaPredicted RBP25.23■■□□□ 1.63
HMGB3P22-201ENST00000442010 SRP68Q9UHB9 627 aaKnown RBP25.23■■□□□ 1.63
HMGB3P22-201ENST00000442010 HEG1Q9ULI3 1381 aa25.22■■□□□ 1.63
HMGB3P22-201ENST00000442010 ZBTB1Q9Y2K1 713 aa25.22■■□□□ 1.63
HMGB3P22-201ENST00000442010 N4BP2Q86UW6 1770 aaPredicted RBP25.21■■□□□ 1.63
HMGB3P22-201ENST00000442010 PELP1Q8IZL8 1130 aaKnown RBP25.21■■□□□ 1.63
HMGB3P22-201ENST00000442010 PLEKHF1Q96S99 279 aa25.21■■□□□ 1.63
HMGB3P22-201ENST00000442010 HTATSF1O43719 755 aaKnown RBP25.2■■□□□ 1.62
HMGB3P22-201ENST00000442010 C10orf71Q711Q0 1435 aa25.2■■□□□ 1.62
HMGB3P22-201ENST00000442010 KCNQ3O43525 872 aa25.19■■□□□ 1.62
HMGB3P22-201ENST00000442010 FKBP8Q14318 412 aa25.19■■□□□ 1.62
HMGB3P22-201ENST00000442010 MCM10Q7L590 875 aa25.19■■□□□ 1.62
HMGB3P22-201ENST00000442010 BRCA1P38398 1863 aaKnown RBP25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms