RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SPATA31C2B4DYI2 1134 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 LZTS3O60299 673 aaPredicted RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 INHAP05111 366 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 SCNN1DP51172 638 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 TBC1D9Q6ZT07 1266 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 ZSCAN1Q8NBB4 408 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 NANOS1Q8WY41 292 aaKnown RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 CALR3Q96L12 384 aaKnown RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 CNTNAP3BQ96NU0 1288 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 ARID3AQ99856 593 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 COL25A1Q9BXS0 654 aaPredicted RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 CNTNAP3Q9BZ76 1288 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 GPAMQ9HCL2 828 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 CUEDC1Q9NWM3 386 aaPredicted RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 ZNF777Q9ULD5 760 aaPredicted RBP6.91□□□□□ -1.3
VPS41-207ENST00000439468 DYRK1BQ9Y463 629 aa6.91□□□□□ -1.3
VPS41-207ENST00000439468 USP17L3A6NCW0 530 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 USP17L4A6NCW7 530 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 FOXR1Q6PIV2 292 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 USP17L2Q6R6M4 530 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 USP17L1Q7RTZ2 530 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 FNBP4Q8N3X1 1017 aaPredicted RBP6.9□□□□□ -1.3
VPS41-207ENST00000439468 UCN2Q96RP3 112 aa6.9□□□□□ -1.3
VPS41-207ENST00000439468 FHDC1Q9C0D6 1143 aaPredicted RBP6.9□□□□□ -1.3
VPS41-207ENST00000439468 FAM181BA6NEQ2 426 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 H7C1W4 665 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 ATP9BO43861 1147 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 PLA2G4AP47712 749 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 C4orf17Q53FE4 359 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 TRIM50Q86XT4 487 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 TRIM22Q8IYM9 498 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 RHBDD1Q8TEB9 315 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 HRH3Q9Y5N1 445 aa6.89□□□□□ -1.31
VPS41-207ENST00000439468 A0A1B0GTH6 734 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 F11P03951 625 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 SMTNP53814 917 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 WDR44Q5JSH3 913 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 ZNF837Q96EG3 531 aaPredicted RBP6.88□□□□□ -1.31
VPS41-207ENST00000439468 STK17AQ9UEE5 414 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 PCDHGA11Q9Y5H2 935 aa6.88□□□□□ -1.31
VPS41-207ENST00000439468 TMEM229AB2RXF0 380 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 GPR25O00155 361 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 BACH1O14867 736 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 CSB-PGBD3P0DP91 1061 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 ATP1A2P50993 1020 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 DBN1Q16643 649 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 RNFT1Q5M7Z0 435 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 PPARGC1BQ86YN6 1023 aaKnown RBP6.87□□□□□ -1.31
VPS41-207ENST00000439468 PLEKHM2Q8IWE5 1019 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 PGBD3Q8N328 593 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS41-207ENST00000439468 GTPBP3Q969Y2 492 aaKnown RBP6.87□□□□□ -1.31
VPS41-207ENST00000439468 AIDAQ96BJ3 306 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 TRERF1Q96PN7 1200 aa6.87□□□□□ -1.31
VPS41-207ENST00000439468 NUCKS1Q9H1E3 243 aaKnown RBP6.87□□□□□ -1.31
VPS41-207ENST00000439468 RBM19Q9Y4C8 960 aaKnown RBP6.87□□□□□ -1.31
VPS41-207ENST00000439468 A6NJY4 79 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 KRT76Q01546 638 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 TPCN2Q8NHX9 752 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 GMCL1Q96IK5 515 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 NIFKQ9BYG3 293 aaKnown RBP6.86□□□□□ -1.31
VPS41-207ENST00000439468 RUBCNLQ9H714 662 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 ZNF358Q9NW07 568 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 CABP1Q9NZU7 370 aa6.86□□□□□ -1.31
VPS41-207ENST00000439468 TFIP11Q9UBB9 837 aaKnown RBP6.86□□□□□ -1.31
VPS41-207ENST00000439468 MKRN1Q9UHC7 482 aaKnown RBP6.86□□□□□ -1.31
VPS41-207ENST00000439468 MSX1P28360 303 aa6.85□□□□□ -1.31
VPS41-207ENST00000439468 ZNF594Q96JF6 807 aaPredicted RBP6.85□□□□□ -1.31
VPS41-207ENST00000439468 DNAAF2Q9NVR5 837 aaKnown RBP6.85□□□□□ -1.31
VPS41-207ENST00000439468 OGFOD1Q8N543 542 aa6.84□□□□□ -1.31
VPS41-207ENST00000439468 PALM3A6NDB9 673 aaPredicted RBP6.83□□□□□ -1.32
VPS41-207ENST00000439468 CLDN10P78369 228 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 NBPF1Q3BBV0 1214 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 EFHC2Q5JST6 749 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 CCDC102BQ68D86 513 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 SVOPQ8N4V2 548 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 SLC4A9Q96Q91 983 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 PPP1R12CQ9BZL4 782 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 KIAA1024Q9UPX6 916 aa6.83□□□□□ -1.32
VPS41-207ENST00000439468 MAFBQ9Y5Q3 323 aaPredicted RBP6.83□□□□□ -1.32
VPS41-207ENST00000439468 CDK2AP1O14519 115 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 RASA1P20936 1047 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 TBCELQ5QJ74 424 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 TNS4Q8IZW8 715 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 PARP3Q9Y6F1 533 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 USP3Q9Y6I4 520 aa6.82□□□□□ -1.32
VPS41-207ENST00000439468 ADAMTS2O95450 1211 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 TATP17735 454 aaPredicted RBP6.81□□□□□ -1.32
VPS41-207ENST00000439468 LORP23490 312 aaPredicted RBP6.81□□□□□ -1.32
VPS41-207ENST00000439468 LMOD1P29536 600 aaPredicted RBP6.81□□□□□ -1.32
VPS41-207ENST00000439468 GAS6Q14393 721 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 MTFR1Q15390 333 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 ARSJQ5FYB0 599 aaPredicted RBP6.81□□□□□ -1.32
VPS41-207ENST00000439468 LARP1Q6PKG0 1096 aaKnown RBP6.81□□□□□ -1.32
VPS41-207ENST00000439468 LARGE2Q8N3Y3 721 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 CCDC82Q8N4S0 544 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 MBIPQ9NS73 344 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 ZNF232Q9UNY5 417 aa6.81□□□□□ -1.32
VPS41-207ENST00000439468 SFI1A8K8P3 1242 aa6.8□□□□□ -1.32
VPS41-207ENST00000439468 MX2P20592 715 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms