RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, human

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMPD4-208	ENST00000439029	KIF13B	Q9NQT8	1826 aa		13.89	□□□□□ -0.19
SMPD4-208	ENST00000439029	PKD1L3	Q7Z443	1732 aa		13.88	□□□□□ -0.19
SMPD4-208	ENST00000439029	KCNA3	P22001	575 aa		13.88	□□□□□ -0.19
SMPD4-208	ENST00000439029	TMF1	P82094	1093 aa		13.88	□□□□□ -0.19
SMPD4-208	ENST00000439029	CCDC87	Q9NVE4	849 aa		13.88	□□□□□ -0.19
SMPD4-208	ENST00000439029	CGNL1	Q0VF96	1302 aa		13.88	□□□□□ -0.19
SMPD4-208	ENST00000439029	TERF2IP	Q9NYB0	399 aa		13.87	□□□□□ -0.19
SMPD4-208	ENST00000439029	MKRN1	Q9UHC7	482 aa	Known RBP	13.87	□□□□□ -0.19
SMPD4-208	ENST00000439029	ASAP1	Q9ULH1	1129 aa		13.87	□□□□□ -0.19
SMPD4-208	ENST00000439029	RASSF7	Q02833	373 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	DALRD3	Q5D0E6	543 aa	Known RBP	13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	TRAPPC3L	Q5T215	181 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	NLGN1	Q8N2Q7	840 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	DCAF5	Q96JK2	942 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	PIM2	Q9P1W9	311 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	PARP3	Q9Y6F1	533 aa		13.86	□□□□□ -0.19
SMPD4-208	ENST00000439029	MAP2	P11137	1827 aa	Known RBP	13.85	□□□□□ -0.19
SMPD4-208	ENST00000439029	CHRNA5	P30532	468 aa		13.85	□□□□□ -0.19
SMPD4-208	ENST00000439029	BRCA1	P38398	1863 aa	Known RBP	13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	FOXN1	O15353	648 aa		13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	FAM161A	Q3B820	660 aa		13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	HSP90AB2P	Q58FF8	381 aa		13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	ARHGEF1	Q92888	912 aa	Known RBP	13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	RTCB	Q9Y3I0	505 aa	Known RBP	13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.84	□□□□□ -0.19
SMPD4-208	ENST00000439029	GYS1	P13807	737 aa		13.83	□□□□□ -0.2
SMPD4-208	ENST00000439029	TMOD3	Q9NYL9	352 aa		13.83	□□□□□ -0.2
SMPD4-208	ENST00000439029	ARFGEF1	Q9Y6D6	1849 aa		13.83	□□□□□ -0.2
SMPD4-208	ENST00000439029	C4A	P0C0L4	1744 aa		13.82	□□□□□ -0.2
SMPD4-208	ENST00000439029	VEGFA	P15692	232 aa	Predicted RBP	13.82	□□□□□ -0.2
SMPD4-208	ENST00000439029	SBF1	O95248	1867 aa		13.82	□□□□□ -0.2
SMPD4-208	ENST00000439029	SMG6	Q86US8	1419 aa	Known RBP	13.81	□□□□□ -0.2
SMPD4-208	ENST00000439029	RFC4	P35249	363 aa		13.81	□□□□□ -0.2
SMPD4-208	ENST00000439029	SIN3A	Q96ST3	1273 aa		13.81	□□□□□ -0.2
SMPD4-208	ENST00000439029	ATG3	Q9NT62	314 aa		13.81	□□□□□ -0.2
SMPD4-208	ENST00000439029	SLC4A9	Q96Q91	983 aa		13.8	□□□□□ -0.2
SMPD4-208	ENST00000439029	RBM42	Q9BTD8	480 aa	Known RBP	13.8	□□□□□ -0.2
SMPD4-208	ENST00000439029	GGNBP2	Q9H3C7	697 aa		13.8	□□□□□ -0.2
SMPD4-208	ENST00000439029	SRP68	Q9UHB9	627 aa	Known RBP	13.8	□□□□□ -0.2
SMPD4-208	ENST00000439029	RTL1	A6NKG5	1358 aa		13.8	□□□□□ -0.2
SMPD4-208	ENST00000439029	NEUROD1	Q13562	356 aa		13.79	□□□□□ -0.2
SMPD4-208	ENST00000439029	GLTPD2	A6NH11	291 aa		13.78	□□□□□ -0.2
SMPD4-208	ENST00000439029	DDR1	Q08345	913 aa		13.78	□□□□□ -0.2
SMPD4-208	ENST00000439029	NKX1-1	Q15270	411 aa	Predicted RBP	13.78	□□□□□ -0.2
SMPD4-208	ENST00000439029	POTEC	B2RU33	542 aa		13.77	□□□□□ -0.21
SMPD4-208	ENST00000439029	FKBP8	Q14318	412 aa		13.77	□□□□□ -0.21
SMPD4-208	ENST00000439029	CARD11	Q9BXL7	1154 aa		13.77	□□□□□ -0.21
SMPD4-208	ENST00000439029	PRDM10	Q9NQV6	1147 aa		13.77	□□□□□ -0.21
SMPD4-208	ENST00000439029	INSR	P06213	1382 aa		13.76	□□□□□ -0.21
SMPD4-208	ENST00000439029	RPS6KA4	O75676	772 aa		13.76	□□□□□ -0.21
SMPD4-208	ENST00000439029	LBX1	P52954	281 aa		13.76	□□□□□ -0.21
SMPD4-208	ENST00000439029	ABHD8	Q96I13	439 aa		13.76	□□□□□ -0.21
SMPD4-208	ENST00000439029	SPG7	Q9UQ90	795 aa		13.76	□□□□□ -0.21
SMPD4-208	ENST00000439029	POTEI	P0CG38	1075 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	POTEJ	P0CG39	1038 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	LMNB1	P20700	586 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	CTCF	P49711	727 aa	Predicted RBP	13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	AIDA	Q96BJ3	306 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	CREBZF	Q9NS37	354 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	PCDH10	Q9P2E7	1040 aa		13.75	□□□□□ -0.21
SMPD4-208	ENST00000439029	KDR	P35968	1356 aa		13.74	□□□□□ -0.21
SMPD4-208	ENST00000439029	FYB1	O15117	783 aa		13.74	□□□□□ -0.21
SMPD4-208	ENST00000439029	ADRA2B	P18089	450 aa		13.74	□□□□□ -0.21
SMPD4-208	ENST00000439029	PPM1G	O15355	546 aa	Predicted RBP	13.73	□□□□□ -0.21
SMPD4-208	ENST00000439029	PHKG2	P15735	406 aa		13.73	□□□□□ -0.21
SMPD4-208	ENST00000439029	RC3H1	Q5TC82	1133 aa	Known RBP	13.73	□□□□□ -0.21
SMPD4-208	ENST00000439029	EMILIN1	Q9Y6C2	1016 aa		13.73	□□□□□ -0.21
SMPD4-208	ENST00000439029	MYH14	Q7Z406	1995 aa	Known RBP	13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	FLT4	P35916	1363 aa		13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	CNTNAP4	Q9C0A0	1308 aa		13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	VEGFB	P49765	207 aa		13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	CHADL	Q6NUI6	762 aa		13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	KDM6A	O15550	1401 aa	Predicted RBP	13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	CCDC88A	Q3V6T2	1871 aa		13.72	□□□□□ -0.21
SMPD4-208	ENST00000439029	CNTNAP1	P78357	1384 aa		13.71	□□□□□ -0.21
SMPD4-208	ENST00000439029	CCDC85C	A6NKD9	419 aa		13.71	□□□□□ -0.21
SMPD4-208	ENST00000439029	POLRMT	O00411	1230 aa	Known RBP	13.71	□□□□□ -0.21
SMPD4-208	ENST00000439029	IFNL2	Q8IZJ0	200 aa		13.71	□□□□□ -0.21
SMPD4-208	ENST00000439029	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.71	□□□□□ -0.21
SMPD4-208	ENST00000439029	NFKBIE	O00221	500 aa		13.7	□□□□□ -0.22
SMPD4-208	ENST00000439029	PTCD1	O75127	700 aa	Known RBP	13.7	□□□□□ -0.22
SMPD4-208	ENST00000439029	MLLT1	Q03111	559 aa	Predicted RBP	13.7	□□□□□ -0.22
SMPD4-208	ENST00000439029	TIAM2	Q8IVF5	1701 aa		13.7	□□□□□ -0.22
SMPD4-208	ENST00000439029	USP42	Q9H9J4	1324 aa	Known RBP	13.69	□□□□□ -0.22
SMPD4-208	ENST00000439029	CRKL	P46109	303 aa	Known RBP	13.69	□□□□□ -0.22
SMPD4-208	ENST00000439029	DPY19L2	Q6NUT2	758 aa		13.69	□□□□□ -0.22
SMPD4-208	ENST00000439029	EYA1	Q99502	592 aa		13.69	□□□□□ -0.22
SMPD4-208	ENST00000439029	COL5A3	P25940	1745 aa	Predicted RBP	13.68	□□□□□ -0.22
SMPD4-208	ENST00000439029	HSPA8	P11142	646 aa	Known RBP	13.68	□□□□□ -0.22
SMPD4-208	ENST00000439029	PUS7	Q96PZ0	661 aa	Known RBP	13.68	□□□□□ -0.22
SMPD4-208	ENST00000439029	WBP1L	Q9NX94	342 aa		13.68	□□□□□ -0.22
SMPD4-208	ENST00000439029	TM4SF1	P30408	202 aa		13.67	□□□□□ -0.22
SMPD4-208	ENST00000439029	USPL1	Q5W0Q7	1092 aa		13.67	□□□□□ -0.22
SMPD4-208	ENST00000439029	C2CD5	Q86YS7	1000 aa		13.67	□□□□□ -0.22
SMPD4-208	ENST00000439029	TTLL6	Q8N841	843 aa		13.67	□□□□□ -0.22
SMPD4-208	ENST00000439029	DDN	O94850	711 aa	Predicted RBP	13.66	□□□□□ -0.22
SMPD4-208	ENST00000439029	ERFE	Q4G0M1	354 aa		13.66	□□□□□ -0.22
SMPD4-208	ENST00000439029	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
SMPD4-208	ENST00000439029	CABP4	P57796	275 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms