RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 INTS3Q68E01 1043 aaKnown RBP19.16■□□□□ 0.66
SCARF1-203ENST00000434376 ANKRD24Q8TF21 1146 aa19.16■□□□□ 0.66
SCARF1-203ENST00000434376 UPF3BQ9BZI7 483 aaKnown RBP19.16■□□□□ 0.66
SCARF1-203ENST00000434376 NRXN3Q9Y4C0 1643 aa19.16■□□□□ 0.66
SCARF1-203ENST00000434376 PROSER3Q2NL68 480 aa19.16■□□□□ 0.66
SCARF1-203ENST00000434376 KRT28Q7Z3Y7 464 aa19.16■□□□□ 0.66
SCARF1-203ENST00000434376 PIK3R4Q99570 1358 aa19.15■□□□□ 0.66
SCARF1-203ENST00000434376 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.15■□□□□ 0.66
SCARF1-203ENST00000434376 USP32Q8NFA0 1604 aa19.15■□□□□ 0.66
SCARF1-203ENST00000434376 PA2G4Q9UQ80 394 aaKnown RBP19.15■□□□□ 0.66
SCARF1-203ENST00000434376 CDC42BPGQ6DT37 1551 aa19.15■□□□□ 0.66
SCARF1-203ENST00000434376 KAT6BQ8WYB5 2073 aa19.15■□□□□ 0.66
SCARF1-203ENST00000434376 TTC22Q5TAA0 569 aa19.15■□□□□ 0.66
SCARF1-203ENST00000434376 RTL1A6NKG5 1358 aa19.14■□□□□ 0.66
SCARF1-203ENST00000434376 C9orf78Q9NZ63 289 aaPredicted RBP19.14■□□□□ 0.65
SCARF1-203ENST00000434376 TAOK2Q9UL54 1235 aa19.14■□□□□ 0.65
SCARF1-203ENST00000434376 CHMP5Q9NZZ3 219 aa19.14■□□□□ 0.65
SCARF1-203ENST00000434376 OVOS2A0A0J9YW53 1432 aa19.14■□□□□ 0.65
SCARF1-203ENST00000434376 OVOS2Q6IE36 1432 aa19.14■□□□□ 0.65
SCARF1-203ENST00000434376 RIMS1Q86UR5 1692 aaKnown RBP19.14■□□□□ 0.65
SCARF1-203ENST00000434376 IGSF1Q8N6C5 1336 aa19.14■□□□□ 0.65
SCARF1-203ENST00000434376 CEP170BQ9Y4F5 1589 aaPredicted RBP19.13■□□□□ 0.65
SCARF1-203ENST00000434376 KIF20BQ96Q89 1820 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 TRAK2O60296 914 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 SSFA2P28290 1259 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 RPAP2Q8IXW5 612 aaPredicted RBP19.13■□□□□ 0.65
SCARF1-203ENST00000434376 MCM4P33991 863 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 GLIPR1L2Q4G1C9 344 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 PPP1R42Q7Z4L9 355 aa19.13■□□□□ 0.65
SCARF1-203ENST00000434376 UNC5CLQ8IV45 518 aa19.12■□□□□ 0.65
SCARF1-203ENST00000434376 CASC1Q6TDU7 716 aa19.12■□□□□ 0.65
SCARF1-203ENST00000434376 KLHDC4Q8TBB5 520 aa19.12■□□□□ 0.65
SCARF1-203ENST00000434376 TRIM44Q96DX7 344 aaPredicted RBP19.12■□□□□ 0.65
SCARF1-203ENST00000434376 ANTXR1Q9H6X2 564 aa19.12■□□□□ 0.65
SCARF1-203ENST00000434376 KIF13AQ9H1H9 1805 aa19.11■□□□□ 0.65
SCARF1-203ENST00000434376 PKP1Q13835 747 aa19.11■□□□□ 0.65
SCARF1-203ENST00000434376 ATF3P18847 181 aa19.11■□□□□ 0.65
SCARF1-203ENST00000434376 CCT4P50991 539 aaKnown RBP19.11■□□□□ 0.65
SCARF1-203ENST00000434376 LRRCC1Q9C099 1032 aa19.11■□□□□ 0.65
SCARF1-203ENST00000434376 NEK4P51957 841 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 HSP90AA2PQ14568 343 aaPredicted RBP19.1■□□□□ 0.65
SCARF1-203ENST00000434376 SRCIN1Q9C0H9 1055 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 CHMP3Q9Y3E7 222 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 PDE1AP54750 535 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 NCBP3Q53F19 620 aaKnown RBP19.1■□□□□ 0.65
SCARF1-203ENST00000434376 ZGPATQ8N5A5 531 aaKnown RBP19.1■□□□□ 0.65
SCARF1-203ENST00000434376 IP6K1Q92551 441 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 USP44Q9H0E7 712 aa19.1■□□□□ 0.65
SCARF1-203ENST00000434376 TNPO1Q92973 898 aaKnown RBP19.09■□□□□ 0.65
SCARF1-203ENST00000434376 RAPGEF4Q8WZA2 1011 aa19.09■□□□□ 0.65
SCARF1-203ENST00000434376 STRN4Q9NRL3 753 aa19.09■□□□□ 0.65
SCARF1-203ENST00000434376 PTPRCP08575 1304 aa19.08■□□□□ 0.65
SCARF1-203ENST00000434376 NFATC2IPQ8NCF5 419 aa19.08■□□□□ 0.65
SCARF1-203ENST00000434376 MAP3K5Q99683 1374 aa19.08■□□□□ 0.64
SCARF1-203ENST00000434376 PLEKHO1Q53GL0 409 aaPredicted RBP19.08■□□□□ 0.64
SCARF1-203ENST00000434376 MAP3K2Q9Y2U5 619 aa19.08■□□□□ 0.64
SCARF1-203ENST00000434376 CRB1P82279 1406 aa19.08■□□□□ 0.64
SCARF1-203ENST00000434376 PTCH1Q13635 1447 aa19.08■□□□□ 0.64
SCARF1-203ENST00000434376 KIF2CQ99661 725 aa19.07■□□□□ 0.64
SCARF1-203ENST00000434376 TECPR2O15040 1411 aa19.07■□□□□ 0.64
SCARF1-203ENST00000434376 PTCD1O75127 700 aaKnown RBP19.07■□□□□ 0.64
SCARF1-203ENST00000434376 MX1P20591 662 aa19.07■□□□□ 0.64
SCARF1-203ENST00000434376 CCDC85AQ96PX6 553 aaPredicted RBP19.07■□□□□ 0.64
SCARF1-203ENST00000434376 RGPD8O14715 1765 aaPredicted RBP19.06■□□□□ 0.64
SCARF1-203ENST00000434376 ATP5J2-PTCD1G3V325 749 aa19.06■□□□□ 0.64
SCARF1-203ENST00000434376 K7ELQ4 463 aaPredicted RBP19.06■□□□□ 0.64
SCARF1-203ENST00000434376 GNAI3P08754 354 aa19.06■□□□□ 0.64
SCARF1-203ENST00000434376 NDUFB9Q9Y6M9 179 aa19.06■□□□□ 0.64
SCARF1-203ENST00000434376 SPG7Q9UQ90 795 aa19.06■□□□□ 0.64
SCARF1-203ENST00000434376 MCTP1Q6DN14 999 aa19.05■□□□□ 0.64
SCARF1-203ENST00000434376 CPA1P15085 419 aa19.05■□□□□ 0.64
SCARF1-203ENST00000434376 BRPF1P55201 1214 aaPredicted RBP19.05■□□□□ 0.64
SCARF1-203ENST00000434376 CWC27Q6UX04 472 aaKnown RBP19.05■□□□□ 0.64
SCARF1-203ENST00000434376 RIC3Q7Z5B4 369 aa19.05■□□□□ 0.64
SCARF1-203ENST00000434376 ARID3AQ99856 593 aa19.05■□□□□ 0.64
SCARF1-203ENST00000434376 DNAAF4Q8WXU2 420 aa19.04■□□□□ 0.64
SCARF1-203ENST00000434376 EIF4A1P60842 406 aaKnown RBP19.04■□□□□ 0.64
SCARF1-203ENST00000434376 PKNOX2Q96KN3 472 aa19.04■□□□□ 0.64
SCARF1-203ENST00000434376 CCDC8Q9H0W5 538 aaPredicted RBP19.04■□□□□ 0.64
SCARF1-203ENST00000434376 ARHGEF10O15013 1369 aa19.04■□□□□ 0.64
SCARF1-203ENST00000434376 PALD1Q9ULE6 856 aa19.03■□□□□ 0.64
SCARF1-203ENST00000434376 UBR1Q8IWV7 1749 aa19.03■□□□□ 0.64
SCARF1-203ENST00000434376 USP31Q70CQ4 1352 aa19.03■□□□□ 0.64
SCARF1-203ENST00000434376 DLG5Q8TDM6 1919 aa19.02■□□□□ 0.64
SCARF1-203ENST00000434376 USP26Q9BXU7 913 aa19.02■□□□□ 0.63
SCARF1-203ENST00000434376 IL25Q9H293 177 aa19.02■□□□□ 0.63
SCARF1-203ENST00000434376 SOS1Q07889 1333 aaPredicted RBP19.01■□□□□ 0.63
SCARF1-203ENST00000434376 KCNJ4P48050 445 aa19.01■□□□□ 0.63
SCARF1-203ENST00000434376 RBM25P49756 843 aaKnown RBP19.01■□□□□ 0.63
SCARF1-203ENST00000434376 KCNH5Q8NCM2 988 aa19.01■□□□□ 0.63
SCARF1-203ENST00000434376 DIP2AQ14689 1571 aa19.01■□□□□ 0.63
SCARF1-203ENST00000434376 ERC2O15083 957 aa19■□□□□ 0.63
SCARF1-203ENST00000434376 GRPEL1Q9HAV7 217 aa19■□□□□ 0.63
SCARF1-203ENST00000434376 DDX49Q9Y6V7 483 aaKnown RBP19■□□□□ 0.63
SCARF1-203ENST00000434376 RGS12O14924 1447 aa19■□□□□ 0.63
SCARF1-203ENST00000434376 RNMTO43148 476 aaKnown RBP19■□□□□ 0.63
SCARF1-203ENST00000434376 ATP8B2P98198 1209 aa19■□□□□ 0.63
SCARF1-203ENST00000434376 GDPD2Q9HCC8 539 aa19■□□□□ 0.63
SCARF1-203ENST00000434376 ATP10DQ9P241 1426 aa18.99■□□□□ 0.63
SCARF1-203ENST00000434376 PEAK1Q9H792 1746 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms