RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 HRH3Q9Y5N1 445 aa7.11□□□□□ -1.27
CLK1-204ENST00000432425 GTF3C3Q9Y5Q9 886 aa7.11□□□□□ -1.27
CLK1-204ENST00000432425 WDR44Q5JSH3 913 aa7.1□□□□□ -1.27
CLK1-204ENST00000432425 GAS2L1Q99501 681 aaPredicted RBP7.1□□□□□ -1.27
CLK1-204ENST00000432425 FHDC1Q9C0D6 1143 aaPredicted RBP7.1□□□□□ -1.27
CLK1-204ENST00000432425 PCDHGA11Q9Y5H2 935 aa7.1□□□□□ -1.27
CLK1-204ENST00000432425 INSM1Q01101 510 aaPredicted RBP7.09□□□□□ -1.27
CLK1-204ENST00000432425 SV2AQ7L0J3 742 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 NANOS1Q8WY41 292 aaKnown RBP7.09□□□□□ -1.27
CLK1-204ENST00000432425 TIMMDC1Q9NPL8 285 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 SERTAD1Q9UHV2 236 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 DYRK1BQ9Y463 629 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 ATP1A2P50993 1020 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 RIPOR1Q6ZS17 1223 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 VWA5B2Q8N398 1253 aa7.09□□□□□ -1.27
CLK1-204ENST00000432425 TMEM229AB2RXF0 380 aa7.08□□□□□ -1.28
CLK1-204ENST00000432425 PHKA2P46019 1235 aa7.08□□□□□ -1.28
CLK1-204ENST00000432425 RHBDD1Q8TEB9 315 aa7.08□□□□□ -1.28
CLK1-204ENST00000432425 TFIP11Q9UBB9 837 aaKnown RBP7.08□□□□□ -1.28
CLK1-204ENST00000432425 ZNF777Q9ULD5 760 aaPredicted RBP7.08□□□□□ -1.28
CLK1-204ENST00000432425 BACH1O14867 736 aa7.07□□□□□ -1.28
CLK1-204ENST00000432425 SMTNP53814 917 aa7.07□□□□□ -1.28
CLK1-204ENST00000432425 PPARGC1BQ86YN6 1023 aaKnown RBP7.07□□□□□ -1.28
CLK1-204ENST00000432425 MKRN1Q9UHC7 482 aaKnown RBP7.07□□□□□ -1.28
CLK1-204ENST00000432425 PALM3A6NDB9 673 aaPredicted RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 C4orf17Q53FE4 359 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 GMCL1Q96IK5 515 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 MAFBQ9Y5Q3 323 aaPredicted RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 H7C1W4 665 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 TRIM22Q8IYM9 498 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 GPR161Q8N6U8 529 aaKnown RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
CLK1-204ENST00000432425 PPP1R12CQ9BZL4 782 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 DNAAF2Q9NVR5 837 aaKnown RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 ZNF358Q9NW07 568 aa7.06□□□□□ -1.28
CLK1-204ENST00000432425 CUEDC1Q9NWM3 386 aaPredicted RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 RBM19Q9Y4C8 960 aaKnown RBP7.06□□□□□ -1.28
CLK1-204ENST00000432425 A0A1B0GTH6 734 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 A6NJY4 79 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 F11P03951 625 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 OGFOD1Q8N543 542 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 TPCN2Q8NHX9 752 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 SLC4A9Q96Q91 983 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 ZMYND15Q9H091 742 aa7.05□□□□□ -1.28
CLK1-204ENST00000432425 PLA2G4AP47712 749 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 CLDN10P78369 228 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 CCDC102BQ68D86 513 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 FOXR1Q6PIV2 292 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 LARGE2Q8N3Y3 721 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 ZNF837Q96EG3 531 aaPredicted RBP7.04□□□□□ -1.28
CLK1-204ENST00000432425 COL25A1Q9BXS0 654 aaPredicted RBP7.04□□□□□ -1.28
CLK1-204ENST00000432425 NIFKQ9BYG3 293 aaKnown RBP7.04□□□□□ -1.28
CLK1-204ENST00000432425 GPAMQ9HCL2 828 aa7.04□□□□□ -1.28
CLK1-204ENST00000432425 CSB-PGBD3P0DP91 1061 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 MTFR1Q15390 333 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 PGBD3Q8N328 593 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 CNTNAP3BQ96NU0 1288 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 CNTNAP3Q9BZ76 1288 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 NUCKS1Q9H1E3 243 aaKnown RBP7.03□□□□□ -1.28
CLK1-204ENST00000432425 KIAA1024Q9UPX6 916 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 CDK2AP1O14519 115 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 ZBTB7BO15156 539 aaPredicted RBP7.03□□□□□ -1.28
CLK1-204ENST00000432425 RASA1P20936 1047 aa7.03□□□□□ -1.28
CLK1-204ENST00000432425 LMOD1P29536 600 aaPredicted RBP7.03□□□□□ -1.28
CLK1-204ENST00000432425 ZNF594Q96JF6 807 aaPredicted RBP7.03□□□□□ -1.28
CLK1-204ENST00000432425 MSX1P28360 303 aa7.02□□□□□ -1.29
CLK1-204ENST00000432425 DBN1Q16643 649 aa7.02□□□□□ -1.29
CLK1-204ENST00000432425 LARP1Q6PKG0 1096 aaKnown RBP7.02□□□□□ -1.29
CLK1-204ENST00000432425 ZSCAN1Q8NBB4 408 aa7.02□□□□□ -1.29
CLK1-204ENST00000432425 TRERF1Q96PN7 1200 aa7.02□□□□□ -1.29
CLK1-204ENST00000432425 CABP1Q9NZU7 370 aa7.02□□□□□ -1.29
CLK1-204ENST00000432425 NBPF1Q3BBV0 1214 aa7.01□□□□□ -1.29
CLK1-204ENST00000432425 SIX5Q8N196 739 aa7.01□□□□□ -1.29
CLK1-204ENST00000432425 GTPBP3Q969Y2 492 aaKnown RBP7.01□□□□□ -1.29
CLK1-204ENST00000432425 AIDAQ96BJ3 306 aa7.01□□□□□ -1.29
CLK1-204ENST00000432425 IQSEC3Q9UPP2 1182 aaPredicted RBP7.01□□□□□ -1.29
CLK1-204ENST00000432425 KRT76Q01546 638 aa7□□□□□ -1.29
CLK1-204ENST00000432425 RUBCNLQ9H714 662 aa7□□□□□ -1.29
CLK1-204ENST00000432425 VRTNQ9H8Y1 702 aa7□□□□□ -1.29
CLK1-204ENST00000432425 SCHIP1Q9P0W5 487 aaPredicted RBP7□□□□□ -1.29
CLK1-204ENST00000432425 STK17AQ9UEE5 414 aa7□□□□□ -1.29
CLK1-204ENST00000432425 FAM181BA6NEQ2 426 aa7□□□□□ -1.29
CLK1-204ENST00000432425 GPR25O00155 361 aa7□□□□□ -1.29
CLK1-204ENST00000432425 LBRQ14739 615 aaKnown RBP7□□□□□ -1.29
CLK1-204ENST00000432425 EFHC2Q5JST6 749 aa7□□□□□ -1.29
CLK1-204ENST00000432425 RNFT1Q5M7Z0 435 aa7□□□□□ -1.29
CLK1-204ENST00000432425 TNS4Q8IZW8 715 aa7□□□□□ -1.29
CLK1-204ENST00000432425 C1orf216Q8TAB5 229 aa7□□□□□ -1.29
CLK1-204ENST00000432425 USP3Q9Y6I4 520 aa7□□□□□ -1.29
CLK1-204ENST00000432425 SFI1A8K8P3 1242 aa6.99□□□□□ -1.29
CLK1-204ENST00000432425 M0R2N6 131 aa6.99□□□□□ -1.29
CLK1-204ENST00000432425 TATP17735 454 aaPredicted RBP6.99□□□□□ -1.29
CLK1-204ENST00000432425 SLC9A9Q8IVB4 645 aa6.99□□□□□ -1.29
CLK1-204ENST00000432425 EPHA4P54764 986 aa6.98□□□□□ -1.29
CLK1-204ENST00000432425 FOXK2Q01167 660 aa6.98□□□□□ -1.29
CLK1-204ENST00000432425 CFAP70Q5T0N1 1121 aa6.98□□□□□ -1.29
CLK1-204ENST00000432425 KANK4Q5T7N3 995 aaPredicted RBP6.98□□□□□ -1.29
CLK1-204ENST00000432425 CHMP3Q9Y3E7 222 aa6.98□□□□□ -1.29
CLK1-204ENST00000432425 FAM196BA6NMK8 535 aa6.97□□□□□ -1.29
CLK1-204ENST00000432425 USP17L15C9J2P7 530 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms