RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 FKBP8Q14318 412 aa12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 ASAP1Q9ULH1 1129 aa12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 CHL1O00533 1208 aa12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 EIF2S2P20042 333 aaKnown RBP12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 TOGARAM1Q9Y4F4 1720 aa12.34□□□□□ -0.43
HMGCLL1-206ENST00000428842 SMIM5Q71RC9 77 aa12.34□□□□□ -0.43
HMGCLL1-206ENST00000428842 SEPT12Q8IYM1 358 aa12.34□□□□□ -0.43
HMGCLL1-206ENST00000428842 CEMIPQ8WUJ3 1361 aa12.34□□□□□ -0.43
HMGCLL1-206ENST00000428842 NWD2Q9ULI1 1742 aa12.34□□□□□ -0.43
HMGCLL1-206ENST00000428842 PKD1L3Q7Z443 1732 aa12.33□□□□□ -0.43
HMGCLL1-206ENST00000428842 SSH1Q8WYL5 1049 aa12.33□□□□□ -0.43
HMGCLL1-206ENST00000428842 PCDH11XQ9BZA7 1347 aa12.33□□□□□ -0.43
HMGCLL1-206ENST00000428842 PCDH11YQ9BZA8 1340 aa12.33□□□□□ -0.43
HMGCLL1-206ENST00000428842 PARP4Q9UKK3 1724 aaKnown RBP12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 ABCC6O95255 1503 aa12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 CABP4P57796 275 aa12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 TAF7Q15545 349 aaPredicted RBP12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 PIGBQ92521 554 aa12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 SLC52A2Q9HAB3 445 aa12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 IFT57Q9NWB7 429 aa12.33□□□□□ -0.44
HMGCLL1-206ENST00000428842 GNAI1P63096 354 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 PDE3BQ13370 1112 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 TWISTNBQ3B726 338 aaPredicted RBP12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 MYH16Q9H6N6 1097 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 LRRC37A3O60309 1634 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 LMOD3Q0VAK6 560 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 ZNF496Q96IT1 587 aaPredicted RBP12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 SCN11AQ9UI33 1791 aa12.32□□□□□ -0.44
HMGCLL1-206ENST00000428842 VAMP4O75379 141 aa12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 TRPC5Q9UL62 973 aaPredicted RBP12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 RARSP54136 660 aaKnown RBP12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 G2E3Q7L622 706 aa12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 NGEFQ8N5V2 710 aa12.31□□□□□ -0.44
HMGCLL1-206ENST00000428842 PROSER3Q2NL68 480 aa12.3□□□□□ -0.44
HMGCLL1-206ENST00000428842 WNK3Q9BYP7 1800 aa12.3□□□□□ -0.44
HMGCLL1-206ENST00000428842 RLBP1P12271 317 aa12.3□□□□□ -0.44
HMGCLL1-206ENST00000428842 PANK1Q8TE04 598 aa12.3□□□□□ -0.44
HMGCLL1-206ENST00000428842 TSHZ2Q9NRE2 1034 aa12.3□□□□□ -0.44
HMGCLL1-206ENST00000428842 BRWD3Q6RI45 1802 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 EIF4A1P60842 406 aaKnown RBP12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 ZNF790Q6PG37 636 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 SMC4Q9NTJ3 1288 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 USP16Q9Y5T5 823 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 ATRNO75882 1429 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 SLC4A9Q96Q91 983 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 ITGB4P16144 1822 aa12.29□□□□□ -0.44
HMGCLL1-206ENST00000428842 DOT1LQ8TEK3 1739 aa12.28□□□□□ -0.44
HMGCLL1-206ENST00000428842 TNS2Q63HR2 1409 aa12.28□□□□□ -0.44
HMGCLL1-206ENST00000428842 BARGINQ6ZT62 677 aa12.28□□□□□ -0.44
HMGCLL1-206ENST00000428842 PHAXQ9H814 394 aaKnown RBP12.28□□□□□ -0.44
HMGCLL1-206ENST00000428842 TMOD3Q9NYL9 352 aa12.28□□□□□ -0.44
HMGCLL1-206ENST00000428842 MYL6BP14649 208 aa12.27□□□□□ -0.44
HMGCLL1-206ENST00000428842 RRP1P56182 461 aaKnown RBP12.27□□□□□ -0.44
HMGCLL1-206ENST00000428842 NOB1Q9ULX3 412 aaKnown RBP12.27□□□□□ -0.44
HMGCLL1-206ENST00000428842 ZNF330Q9Y3S2 320 aaPredicted RBP12.27□□□□□ -0.44
HMGCLL1-206ENST00000428842 IL16Q14005 1332 aa12.27□□□□□ -0.45
HMGCLL1-206ENST00000428842 SIPA1L3O60292 1781 aaPredicted RBP12.27□□□□□ -0.45
HMGCLL1-206ENST00000428842 F6X3S4 739 aa12.27□□□□□ -0.45
HMGCLL1-206ENST00000428842 ATG3Q9NT62 314 aa12.27□□□□□ -0.45
HMGCLL1-206ENST00000428842 THRAP3Q9Y2W1 955 aaKnown RBP12.27□□□□□ -0.45
HMGCLL1-206ENST00000428842 HTATSF1O43719 755 aaKnown RBP12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 EXOC6Q8TAG9 804 aa12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 CHPF2Q9P2E5 772 aa12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 TRIM37O94972 964 aa12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 NKX1-1Q15270 411 aaPredicted RBP12.26□□□□□ -0.45
HMGCLL1-206ENST00000428842 C5P01031 1676 aa12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 CANXP27824 592 aaKnown RBP12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 AIMP1Q12904 312 aaKnown RBP12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 GIGYF1O75420 1035 aaPredicted RBP12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 A1BGP04217 495 aa12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 CALD1Q05682 793 aaKnown RBP12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 HDGFL1Q5TGJ6 251 aa12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 TTC5Q8N0Z6 440 aa12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 COG6Q9Y2V7 657 aa12.25□□□□□ -0.45
HMGCLL1-206ENST00000428842 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.24□□□□□ -0.45
HMGCLL1-206ENST00000428842 KDM3BQ7LBC6 1761 aa12.24□□□□□ -0.45
HMGCLL1-206ENST00000428842 NEFLP07196 543 aa12.24□□□□□ -0.45
HMGCLL1-206ENST00000428842 CRBNQ96SW2 442 aa12.24□□□□□ -0.45
HMGCLL1-206ENST00000428842 RXRBP28702 533 aa12.23□□□□□ -0.45
HMGCLL1-206ENST00000428842 ADAMTS7Q9UKP4 1686 aa12.23□□□□□ -0.45
HMGCLL1-206ENST00000428842 TRIM27P14373 513 aa12.23□□□□□ -0.45
HMGCLL1-206ENST00000428842 DNAJC10Q8IXB1 793 aa12.23□□□□□ -0.45
HMGCLL1-206ENST00000428842 THSD7AQ9UPZ6 1657 aa12.23□□□□□ -0.45
HMGCLL1-206ENST00000428842 KRT27Q7Z3Y8 459 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 SKAP1Q86WV1 359 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 MRPL50Q8N5N7 158 aaKnown RBP12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 ARXQ96QS3 562 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 BCL9O00512 1426 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 ERVV-2B6SEH9 535 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 RBM6P78332 1123 aaKnown RBP12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 ZNF772Q68DY9 489 aaPredicted RBP12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 RGS12O14924 1447 aa12.22□□□□□ -0.45
HMGCLL1-206ENST00000428842 ONECUT3O60422 494 aaPredicted RBP12.21□□□□□ -0.45
HMGCLL1-206ENST00000428842 HSP90AB1P08238 724 aaKnown RBP12.21□□□□□ -0.45
HMGCLL1-206ENST00000428842 AMIGO3Q86WK7 504 aa12.21□□□□□ -0.45
HMGCLL1-206ENST00000428842 B4GALNT3Q6L9W6 998 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms