RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PI4KAP2A4QPH2 592 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 GCP02774 474 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 NBPF7P0C2Y1 421 aaPredicted RBP10.39□□□□□ -0.75
CD44-208ENST00000428726 PLEKHM2Q8IWE5 1019 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 PI4KAP1Q8N8J0 262 aa10.39□□□□□ -0.75
CD44-208ENST00000428726 PA2G4Q9UQ80 394 aaKnown RBP10.39□□□□□ -0.75
CD44-208ENST00000428726 NDUFB9Q9Y6M9 179 aa10.38□□□□□ -0.75
CD44-208ENST00000428726 SDSP20132 328 aa10.38□□□□□ -0.75
CD44-208ENST00000428726 UNC5CLQ8IV45 518 aa10.38□□□□□ -0.75
CD44-208ENST00000428726 CEP170BQ9Y4F5 1589 aaPredicted RBP10.38□□□□□ -0.75
CD44-208ENST00000428726 PTCH1Q13635 1447 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 NCLP19338 710 aaKnown RBP10.37□□□□□ -0.75
CD44-208ENST00000428726 HSCBQ8IWL3 235 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 RGPD8O14715 1765 aaPredicted RBP10.37□□□□□ -0.75
CD44-208ENST00000428726 TTC21AQ8NDW8 1320 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 USP31Q70CQ4 1352 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 BTBD11A6QL63 1104 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 HAP1P54257 671 aaPredicted RBP10.37□□□□□ -0.75
CD44-208ENST00000428726 OS9Q13438 667 aaPredicted RBP10.37□□□□□ -0.75
CD44-208ENST00000428726 PKP1Q13835 747 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 KRT28Q7Z3Y7 464 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 CCDC85AQ96PX6 553 aaPredicted RBP10.37□□□□□ -0.75
CD44-208ENST00000428726 NALCNQ8IZF0 1738 aa10.37□□□□□ -0.75
CD44-208ENST00000428726 SURF6O75683 361 aaKnown RBP10.36□□□□□ -0.75
CD44-208ENST00000428726 ANKRD24Q8TF21 1146 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 STRN4Q9NRL3 753 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 ABCC4O15439 1325 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 DIP2AQ14689 1571 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 PIK3R4Q99570 1358 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 UPF3BQ9BZI7 483 aaKnown RBP10.36□□□□□ -0.75
CD44-208ENST00000428726 SSH2Q76I76 1423 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 FER1L4A9Z1Z3 1794 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 FLT4P35916 1363 aa10.36□□□□□ -0.75
CD44-208ENST00000428726 GAS2L2Q8NHY3 880 aa10.35□□□□□ -0.75
CD44-208ENST00000428726 NFATC2IPQ8NCF5 419 aa10.35□□□□□ -0.75
CD44-208ENST00000428726 PTCD1O75127 700 aaKnown RBP10.34□□□□□ -0.75
CD44-208ENST00000428726 CPA1P15085 419 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 IL25Q9H293 177 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 ATP5J2-PTCD1G3V325 749 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 SRGAP3O43295 1099 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 PPFIA3O75145 1194 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 PANK2Q9BZ23 570 aa10.34□□□□□ -0.75
CD44-208ENST00000428726 CHGBP05060 677 aa10.33□□□□□ -0.75
CD44-208ENST00000428726 ZGPATQ8N5A5 531 aaKnown RBP10.33□□□□□ -0.75
CD44-208ENST00000428726 ANO2Q9NQ90 1003 aa10.33□□□□□ -0.75
CD44-208ENST00000428726 RGPD1P0DJD0 1748 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 PEAK1Q9H792 1746 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 UBTFL1P0CB47 393 aaPredicted RBP10.33□□□□□ -0.76
CD44-208ENST00000428726 SSFA2P28290 1259 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 C1orf141Q5JVX7 400 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 PPP1R42Q7Z4L9 355 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 ANKRD44Q8N8A2 993 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 DCTPP1Q9H773 170 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.33□□□□□ -0.76
CD44-208ENST00000428726 CCDC30Q5VVM6 783 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 GCC1Q96CN9 775 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 USP44Q9H0E7 712 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 RTL1A6NKG5 1358 aa10.33□□□□□ -0.76
CD44-208ENST00000428726 GNAI2P04899 355 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 KIF2CQ99661 725 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 CHMP3Q9Y3E7 222 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 IGSF1Q8N6C5 1336 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 SBNO1A3KN83 1393 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 ARHGEF10O15013 1369 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 KIF24Q5T7B8 1368 aa10.32□□□□□ -0.76
CD44-208ENST00000428726 INTS3Q68E01 1043 aaKnown RBP10.32□□□□□ -0.76
CD44-208ENST00000428726 XRN1Q8IZH2 1706 aaKnown RBP10.31□□□□□ -0.76
CD44-208ENST00000428726 C9orf78Q9NZ63 289 aaPredicted RBP10.31□□□□□ -0.76
CD44-208ENST00000428726 SPG7Q9UQ90 795 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 MAP3K2Q9Y2U5 619 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 CRB1P82279 1406 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 ANKARQ7Z5J8 1434 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 KIAA0232Q92628 1395 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 ATF3P18847 181 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 TTC22Q5TAA0 569 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 EDC3Q96F86 508 aaKnown RBP10.31□□□□□ -0.76
CD44-208ENST00000428726 CCDC8Q9H0W5 538 aaPredicted RBP10.31□□□□□ -0.76
CD44-208ENST00000428726 ANTXR1Q9H6X2 564 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 PALD1Q9ULE6 856 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 FMN2Q9NZ56 1722 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 CDC45O75419 566 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 BMP2KLQ5H9B9 411 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 PPP4R3CPQ6ZMV5 832 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 IP6K1Q92551 441 aa10.31□□□□□ -0.76
CD44-208ENST00000428726 MPNDQ8N594 471 aa10.3□□□□□ -0.76
CD44-208ENST00000428726 TCEANC2Q96MN5 208 aa10.3□□□□□ -0.76
CD44-208ENST00000428726 SOS1Q07889 1333 aaPredicted RBP10.3□□□□□ -0.76
CD44-208ENST00000428726 PDE1AP54750 535 aa10.3□□□□□ -0.76
CD44-208ENST00000428726 SLFNL1Q499Z3 407 aa10.3□□□□□ -0.76
CD44-208ENST00000428726 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.29□□□□□ -0.76
CD44-208ENST00000428726 NEK4P51957 841 aa10.29□□□□□ -0.76
CD44-208ENST00000428726 CWC27Q6UX04 472 aaKnown RBP10.29□□□□□ -0.76
CD44-208ENST00000428726 USP16Q9Y5T5 823 aa10.29□□□□□ -0.76
CD44-208ENST00000428726 EIF4A1P60842 406 aaKnown RBP10.29□□□□□ -0.76
CD44-208ENST00000428726 TNPO1Q92973 898 aaKnown RBP10.29□□□□□ -0.76
CD44-208ENST00000428726 GDPD2Q9HCC8 539 aa10.29□□□□□ -0.76
CD44-208ENST00000428726 KDRP35968 1356 aa10.29□□□□□ -0.76
CD44-208ENST00000428726 COL9A3Q14050 684 aaPredicted RBP10.28□□□□□ -0.76
CD44-208ENST00000428726 RAPGEF4Q8WZA2 1011 aa10.28□□□□□ -0.76
CD44-208ENST00000428726 SYTL4Q96C24 671 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms