RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CNKSR1Q969H4 720 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 USTQ9Y2C2 406 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 BMP2P12643 396 aa7.78□□□□□ -1.16
USP40-204ENST00000427947 CRIPAKQ8N1N5 446 aa7.78□□□□□ -1.16
USP40-204ENST00000427947 TSEN2Q8NCE0 465 aaKnown RBP7.78□□□□□ -1.16
USP40-204ENST00000427947 NLRP3Q96P20 1036 aa7.78□□□□□ -1.16
USP40-204ENST00000427947 ESYT1Q9BSJ8 1104 aa7.78□□□□□ -1.16
USP40-204ENST00000427947 TMEM88BA6NKF7 163 aa7.77□□□□□ -1.17
USP40-204ENST00000427947 BACH1O14867 736 aa7.77□□□□□ -1.17
USP40-204ENST00000427947 LGR5O75473 907 aa7.77□□□□□ -1.17
USP40-204ENST00000427947 PURBQ96QR8 312 aaKnown RBP7.77□□□□□ -1.17
USP40-204ENST00000427947 INSM2Q96T92 566 aaPredicted RBP7.77□□□□□ -1.17
USP40-204ENST00000427947 HINFPQ9BQA5 517 aa7.77□□□□□ -1.17
USP40-204ENST00000427947 M0R2N6 131 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 SPINT1O43278 529 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 SCARF1Q14162 830 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 TLR1Q15399 786 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 SWI5Q1ZZU3 235 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 TRIM46Q7Z4K8 759 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 XAGE2Q96GT9 111 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 POLMQ9NP87 494 aaPredicted RBP7.76□□□□□ -1.17
USP40-204ENST00000427947 AAASQ9NRG9 546 aa7.76□□□□□ -1.17
USP40-204ENST00000427947 PDIA4P13667 645 aaKnown RBP7.75□□□□□ -1.17
USP40-204ENST00000427947 PDE4CQ08493 712 aa7.75□□□□□ -1.17
USP40-204ENST00000427947 FAM69CQ0P6D2 419 aa7.75□□□□□ -1.17
USP40-204ENST00000427947 Q6ZNB5 142 aa7.75□□□□□ -1.17
USP40-204ENST00000427947 TNS4Q8IZW8 715 aa7.75□□□□□ -1.17
USP40-204ENST00000427947 SLC4A9Q96Q91 983 aa7.75□□□□□ -1.17
USP40-204ENST00000427947 A6NJY4 79 aa7.74□□□□□ -1.17
USP40-204ENST00000427947 CTSOP43234 321 aaPredicted RBP7.74□□□□□ -1.17
USP40-204ENST00000427947 SMTNP53814 917 aa7.74□□□□□ -1.17
USP40-204ENST00000427947 ZFP42Q96MM3 310 aa7.74□□□□□ -1.17
USP40-204ENST00000427947 HRH3Q9Y5N1 445 aa7.74□□□□□ -1.17
USP40-204ENST00000427947 PRMT3O60678 531 aa7.73□□□□□ -1.17
USP40-204ENST00000427947 CENPCQ03188 943 aa7.73□□□□□ -1.17
USP40-204ENST00000427947 SLC27A3Q5K4L6 730 aa7.73□□□□□ -1.17
USP40-204ENST00000427947 CLP1Q92989 425 aaKnown RBP7.73□□□□□ -1.17
USP40-204ENST00000427947 ATP13A2Q9NQ11 1180 aa7.73□□□□□ -1.17
USP40-204ENST00000427947 DACH1Q9UI36 760 aa7.73□□□□□ -1.17
USP40-204ENST00000427947 GPC1P35052 558 aa7.72□□□□□ -1.17
USP40-204ENST00000427947 EPHA4P54764 986 aa7.72□□□□□ -1.17
USP40-204ENST00000427947 MTFR1Q15390 333 aa7.72□□□□□ -1.17
USP40-204ENST00000427947 TBCELQ5QJ74 424 aa7.72□□□□□ -1.17
USP40-204ENST00000427947 FOXD4L5Q5VV16 416 aaPredicted RBP7.72□□□□□ -1.17
USP40-204ENST00000427947 ZSCAN10Q96SZ4 725 aaPredicted RBP7.72□□□□□ -1.17
USP40-204ENST00000427947 FHDC1Q9C0D6 1143 aaPredicted RBP7.72□□□□□ -1.17
USP40-204ENST00000427947 TSPAN10Q9H1Z9 355 aaPredicted RBP7.72□□□□□ -1.17
USP40-204ENST00000427947 TTLL8A6PVC2 850 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 GTF2E1P29083 439 aaPredicted RBP7.71□□□□□ -1.18
USP40-204ENST00000427947 RNF144AP50876 292 aaPredicted RBP7.71□□□□□ -1.18
USP40-204ENST00000427947 TMEM214Q6NUQ4 689 aaKnown RBP7.71□□□□□ -1.18
USP40-204ENST00000427947 SLC9A9Q8IVB4 645 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 RNF217Q8TC41 542 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 PRIMPOLQ96LW4 560 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 TRAIPQ9BWF2 469 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 SCHIP1Q9P0W5 487 aaPredicted RBP7.71□□□□□ -1.18
USP40-204ENST00000427947 SLAIN2Q9P270 581 aa7.71□□□□□ -1.18
USP40-204ENST00000427947 ATP2B4P23634 1241 aa7.7□□□□□ -1.18
USP40-204ENST00000427947 NBPF15Q8N660 670 aa7.7□□□□□ -1.18
USP40-204ENST00000427947 SCG3Q8WXD2 468 aaKnown RBP7.7□□□□□ -1.18
USP40-204ENST00000427947 USP3Q9Y6I4 520 aa7.7□□□□□ -1.18
USP40-204ENST00000427947 FIGNL2A6NMB9 653 aa7.69□□□□□ -1.18
USP40-204ENST00000427947 WEE1P30291 646 aa7.69□□□□□ -1.18
USP40-204ENST00000427947 FOXK2Q01167 660 aa7.69□□□□□ -1.18
USP40-204ENST00000427947 GAS2L2Q8NHY3 880 aa7.69□□□□□ -1.18
USP40-204ENST00000427947 CHMP7Q8WUX9 453 aaPredicted RBP7.69□□□□□ -1.18
USP40-204ENST00000427947 GRIP2Q9C0E4 1043 aa7.69□□□□□ -1.18
USP40-204ENST00000427947 IQSEC3Q9UPP2 1182 aaPredicted RBP7.69□□□□□ -1.18
USP40-204ENST00000427947 SOS2Q07890 1332 aaPredicted RBP7.69□□□□□ -1.18
USP40-204ENST00000427947 CDK2AP1O14519 115 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 IGFBP4P22692 258 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 OCLNQ16625 522 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 GNASQ5JWF2 1037 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 LYSMD3Q7Z3D4 306 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 PRICKLE2Q7Z3G6 844 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 PPARGC1BQ86YN6 1023 aaKnown RBP7.68□□□□□ -1.18
USP40-204ENST00000427947 CABP1Q9NZU7 370 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 ATAD2Q6PL18 1390 aa7.68□□□□□ -1.18
USP40-204ENST00000427947 C21orf2O43822 256 aa7.67□□□□□ -1.18
USP40-204ENST00000427947 PPP1R12BO60237 982 aaPredicted RBP7.67□□□□□ -1.18
USP40-204ENST00000427947 SSFA2P28290 1259 aa7.67□□□□□ -1.18
USP40-204ENST00000427947 B4GALNT3Q6L9W6 998 aa7.67□□□□□ -1.18
USP40-204ENST00000427947 RHBDD1Q8TEB9 315 aa7.67□□□□□ -1.18
USP40-204ENST00000427947 CXXC1Q9P0U4 656 aaPredicted RBP7.67□□□□□ -1.18
USP40-204ENST00000427947 DNMT3LQ9UJW3 386 aa7.67□□□□□ -1.18
USP40-204ENST00000427947 LCE2BO14633 110 aa7.66□□□□□ -1.18
USP40-204ENST00000427947 MAN1A2O60476 641 aa7.66□□□□□ -1.18
USP40-204ENST00000427947 PSMA6P60900 246 aaKnown RBP7.66□□□□□ -1.18
USP40-204ENST00000427947 FKBP5Q13451 457 aaPredicted RBP7.66□□□□□ -1.18
USP40-204ENST00000427947 MKNK1Q9BUB5 465 aa7.66□□□□□ -1.18
USP40-204ENST00000427947 NIFKQ9BYG3 293 aaKnown RBP7.66□□□□□ -1.18
USP40-204ENST00000427947 GMPR2Q9P2T1 348 aaKnown RBP7.66□□□□□ -1.18
USP40-204ENST00000427947 ZNF232Q9UNY5 417 aa7.66□□□□□ -1.18
USP40-204ENST00000427947 CHMP3Q9Y3E7 222 aa7.66□□□□□ -1.18
USP40-204ENST00000427947 SOBPA7XYQ1 873 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 BRD1O95696 1058 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 RHOQP17081 205 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 PHKA2P46019 1235 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 PLA2G4AP47712 749 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 POU4F2Q12837 409 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms