RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 RBM42Q9BTD8 480 aaKnown RBP24.82■■□□□ 1.56
GPC1-205ENST00000427506 TAF1LQ8IZX4 1826 aa24.82■■□□□ 1.56
GPC1-205ENST00000427506 C4BP0C0L5 1744 aa24.81■■□□□ 1.56
GPC1-205ENST00000427506 AKAP4Q5JQC9 854 aa24.81■■□□□ 1.56
GPC1-205ENST00000427506 KLHL34Q8N239 644 aa24.81■■□□□ 1.56
GPC1-205ENST00000427506 LINC00116Q8NCU8 138 aa24.81■■□□□ 1.56
GPC1-205ENST00000427506 CFAP53Q96M91 514 aa24.81■■□□□ 1.56
GPC1-205ENST00000427506 PHF14O94880 888 aa24.8■■□□□ 1.56
GPC1-205ENST00000427506 ITPK1Q13572 414 aa24.8■■□□□ 1.56
GPC1-205ENST00000427506 NFATC2IPQ8NCF5 419 aa24.8■■□□□ 1.56
GPC1-205ENST00000427506 MSL1Q68DK7 614 aa24.79■■□□□ 1.56
GPC1-205ENST00000427506 COL3A1P02461 1466 aaPredicted RBP24.77■■□□□ 1.56
GPC1-205ENST00000427506 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.76■■□□□ 1.55
GPC1-205ENST00000427506 GNPATO15228 680 aa24.76■■□□□ 1.55
GPC1-205ENST00000427506 MTHFSDQ2M296 383 aaKnown RBP24.76■■□□□ 1.55
GPC1-205ENST00000427506 SMIM5Q71RC9 77 aa24.76■■□□□ 1.55
GPC1-205ENST00000427506 SSFA2P28290 1259 aa24.75■■□□□ 1.55
GPC1-205ENST00000427506 PPP2R1AP30153 589 aa24.75■■□□□ 1.55
GPC1-205ENST00000427506 PTCD1O75127 700 aaKnown RBP24.74■■□□□ 1.55
GPC1-205ENST00000427506 AMIGO3Q86WK7 504 aa24.74■■□□□ 1.55
GPC1-205ENST00000427506 LGR6Q9HBX8 967 aa24.74■■□□□ 1.55
GPC1-205ENST00000427506 RNMTO43148 476 aaKnown RBP24.73■■□□□ 1.55
GPC1-205ENST00000427506 SLC4A9Q96Q91 983 aa24.73■■□□□ 1.55
GPC1-205ENST00000427506 NUDCQ9Y266 331 aa24.73■■□□□ 1.55
GPC1-205ENST00000427506 MAP3K5Q99683 1374 aa24.72■■□□□ 1.55
GPC1-205ENST00000427506 SLC52A2Q9HAB3 445 aa24.72■■□□□ 1.55
GPC1-205ENST00000427506 COL24A1Q17RW2 1714 aa24.71■■□□□ 1.55
GPC1-205ENST00000427506 RTCBQ9Y3I0 505 aaKnown RBP24.7■■□□□ 1.54
GPC1-205ENST00000427506 SCN11AQ9UI33 1791 aa24.7■■□□□ 1.54
GPC1-205ENST00000427506 UBR3Q6ZT12 1888 aa24.69■■□□□ 1.54
GPC1-205ENST00000427506 GAS2L2Q8NHY3 880 aa24.69■■□□□ 1.54
GPC1-205ENST00000427506 U2AF1L5P0DN76 240 aaPredicted RBP24.67■■□□□ 1.54
GPC1-205ENST00000427506 YY1P25490 414 aa24.67■■□□□ 1.54
GPC1-205ENST00000427506 U2AF1Q01081 240 aaKnown RBP eCLIP24.67■■□□□ 1.54
GPC1-205ENST00000427506 TRAPPC3LQ5T215 181 aa24.67■■□□□ 1.54
GPC1-205ENST00000427506 RC3H1Q5TC82 1133 aaKnown RBP24.67■■□□□ 1.54
GPC1-205ENST00000427506 ZNF831Q5JPB2 1677 aa24.66■■□□□ 1.54
GPC1-205ENST00000427506 PRKAR2BP31323 418 aa24.66■■□□□ 1.54
GPC1-205ENST00000427506 CNTNAP4Q9C0A0 1308 aa24.65■■□□□ 1.54
GPC1-205ENST00000427506 GNAT3A8MTJ3 354 aa24.65■■□□□ 1.54
GPC1-205ENST00000427506 SLC39A6Q13433 755 aa24.64■■□□□ 1.54
GPC1-205ENST00000427506 GPR162Q16538 588 aa24.64■■□□□ 1.54
GPC1-205ENST00000427506 PELP1Q8IZL8 1130 aaKnown RBP24.64■■□□□ 1.54
GPC1-205ENST00000427506 NLGN2Q8NFZ4 835 aa24.64■■□□□ 1.54
GPC1-205ENST00000427506 RSPH6AQ9H0K4 717 aa24.64■■□□□ 1.54
GPC1-205ENST00000427506 RPS6KA4O75676 772 aa24.63■■□□□ 1.53
GPC1-205ENST00000427506 MRC1P22897 1456 aa24.63■■□□□ 1.53
GPC1-205ENST00000427506 CRKLP46109 303 aaKnown RBP24.62■■□□□ 1.53
GPC1-205ENST00000427506 TEFQ10587 303 aa24.62■■□□□ 1.53
GPC1-205ENST00000427506 PHACTR3Q96KR7 559 aa24.62■■□□□ 1.53
GPC1-205ENST00000427506 ADRA2BP18089 450 aa24.61■■□□□ 1.53
GPC1-205ENST00000427506 RFC4P35249 363 aa24.61■■□□□ 1.53
GPC1-205ENST00000427506 ARHGEF1Q92888 912 aaKnown RBP24.61■■□□□ 1.53
GPC1-205ENST00000427506 COL5A3P25940 1745 aaPredicted RBP24.61■■□□□ 1.53
GPC1-205ENST00000427506 FCHSD2O94868 740 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 DNAJC10Q8IXB1 793 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 TTC5Q8N0Z6 440 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 IL17REQ8NFR9 667 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 CD2APQ9Y5K6 639 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 ADAMTS7Q9UKP4 1686 aa24.59■■□□□ 1.53
GPC1-205ENST00000427506 DDX10Q13206 875 aaKnown RBP24.58■■□□□ 1.53
GPC1-205ENST00000427506 VIRMAQ69YN4 1812 aaKnown RBP24.57■■□□□ 1.52
GPC1-205ENST00000427506 NLGN1Q8N2Q7 840 aa24.57■■□□□ 1.52
GPC1-205ENST00000427506 TJP1Q07157 1748 aa24.56■■□□□ 1.52
GPC1-205ENST00000427506 MMP10P09238 476 aa24.56■■□□□ 1.52
GPC1-205ENST00000427506 RTF1Q92541 710 aaKnown RBP24.55■■□□□ 1.52
GPC1-205ENST00000427506 CCDC87Q9NVE4 849 aa24.55■■□□□ 1.52
GPC1-205ENST00000427506 NEFMP07197 916 aa24.54■■□□□ 1.52
GPC1-205ENST00000427506 INTS5Q6P9B9 1019 aaKnown RBP24.54■■□□□ 1.52
GPC1-205ENST00000427506 KCPQ6ZWJ8 1503 aa24.54■■□□□ 1.52
GPC1-205ENST00000427506 CYP19A1P11511 503 aaPredicted RBP24.53■■□□□ 1.52
GPC1-205ENST00000427506 GYS1P13807 737 aa24.53■■□□□ 1.52
GPC1-205ENST00000427506 VSIG10Q8N0Z9 540 aa24.53■■□□□ 1.52
GPC1-205ENST00000427506 CICQ96RK0 1608 aaPredicted RBP24.53■■□□□ 1.52
GPC1-205ENST00000427506 MYH14Q7Z406 1995 aaKnown RBP24.53■■□□□ 1.52
GPC1-205ENST00000427506 RALBP1Q15311 655 aa24.52■■□□□ 1.52
GPC1-205ENST00000427506 ZNF790Q6PG37 636 aa24.52■■□□□ 1.52
GPC1-205ENST00000427506 BTBD11A6QL63 1104 aa24.5■■□□□ 1.51
GPC1-205ENST00000427506 SRP68Q9UHB9 627 aaKnown RBP24.5■■□□□ 1.51
GPC1-205ENST00000427506 CEMIPQ8WUJ3 1361 aa24.5■■□□□ 1.51
GPC1-205ENST00000427506 MCM10Q7L590 875 aa24.49■■□□□ 1.51
GPC1-205ENST00000427506 ZNF496Q96IT1 587 aaPredicted RBP24.49■■□□□ 1.51
GPC1-205ENST00000427506 PARP3Q9Y6F1 533 aa24.49■■□□□ 1.51
GPC1-205ENST00000427506 USP42Q9H9J4 1324 aaKnown RBP24.49■■□□□ 1.51
GPC1-205ENST00000427506 GRIN3BO60391 1043 aa24.48■■□□□ 1.51
GPC1-205ENST00000427506 ZPR1O75312 459 aa24.48■■□□□ 1.51
GPC1-205ENST00000427506 STARD3NLO95772 234 aa24.48■■□□□ 1.51
GPC1-205ENST00000427506 YBX3P16989 372 aaKnown RBP eCLIP24.48■■□□□ 1.51
GPC1-205ENST00000427506 ZBTB1Q9Y2K1 713 aa24.48■■□□□ 1.51
GPC1-205ENST00000427506 C4AP0C0L4 1744 aa24.47■■□□□ 1.51
GPC1-205ENST00000427506 SOS1Q07889 1333 aaPredicted RBP24.47■■□□□ 1.51
GPC1-205ENST00000427506 FMNL2Q96PY5 1086 aa24.47■■□□□ 1.51
GPC1-205ENST00000427506 HEG1Q9ULI3 1381 aa24.46■■□□□ 1.51
GPC1-205ENST00000427506 CANXP27824 592 aaKnown RBP24.46■■□□□ 1.51
GPC1-205ENST00000427506 DCTN1Q14203 1278 aa24.46■■□□□ 1.51
GPC1-205ENST00000427506 TEX13AQ9BXU3 409 aaPredicted RBP24.46■■□□□ 1.51
GPC1-205ENST00000427506 PNNQ9H307 717 aaKnown RBP24.46■■□□□ 1.51
GPC1-205ENST00000427506 UBR2Q8IWV8 1755 aa24.46■■□□□ 1.51
GPC1-205ENST00000427506 HTATSF1O43719 755 aaKnown RBP24.45■■□□□ 1.5
GPC1-205ENST00000427506 FKBP8Q14318 412 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms