RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 CHMP4BQ9H444 224 aaKnown RBP13.33□□□□□ -0.27
CUX1-205ENST00000425244 BRPF3Q9ULD4 1205 aa13.33□□□□□ -0.27
CUX1-205ENST00000425244 ANTXR1Q9H6X2 564 aa13.33□□□□□ -0.28
CUX1-205ENST00000425244 API5Q9BZZ5 524 aaKnown RBP13.32□□□□□ -0.28
CUX1-205ENST00000425244 ABCC4O15439 1325 aa13.32□□□□□ -0.28
CUX1-205ENST00000425244 GAS2L2Q8NHY3 880 aa13.32□□□□□ -0.28
CUX1-205ENST00000425244 NUTM2BA6NNL0 878 aaPredicted RBP13.32□□□□□ -0.28
CUX1-205ENST00000425244 NUTM2EB1AL46 878 aaPredicted RBP13.32□□□□□ -0.28
CUX1-205ENST00000425244 NUTM2AQ8IVF1 878 aaPredicted RBP13.32□□□□□ -0.28
CUX1-205ENST00000425244 ADAMTS2O95450 1211 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 SIRT2Q8IXJ6 389 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 GCC1Q96CN9 775 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 EVA1CP58658 441 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 TOM1L2Q6ZVM7 507 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 HSCBQ8IWL3 235 aa13.31□□□□□ -0.28
CUX1-205ENST00000425244 NHSL1Q5SYE7 1610 aa13.3□□□□□ -0.28
CUX1-205ENST00000425244 GNAT3A8MTJ3 354 aa13.3□□□□□ -0.28
CUX1-205ENST00000425244 RAPGEF4Q8WZA2 1011 aa13.3□□□□□ -0.28
CUX1-205ENST00000425244 ZNF530Q6P9A1 599 aaPredicted RBP13.29□□□□□ -0.28
CUX1-205ENST00000425244 BMP2KLQ5H9B9 411 aa13.29□□□□□ -0.28
CUX1-205ENST00000425244 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
CUX1-205ENST00000425244 BTG4Q9NY30 223 aa13.28□□□□□ -0.28
CUX1-205ENST00000425244 LGR6Q9HBX8 967 aa13.27□□□□□ -0.28
CUX1-205ENST00000425244 APBB1O00213 710 aa13.27□□□□□ -0.29
CUX1-205ENST00000425244 PLEKHO1Q53GL0 409 aaPredicted RBP13.27□□□□□ -0.29
CUX1-205ENST00000425244 C1orf141Q5JVX7 400 aa13.27□□□□□ -0.29
CUX1-205ENST00000425244 IL17REQ8NFR9 667 aa13.27□□□□□ -0.29
CUX1-205ENST00000425244 CRYBG1Q9Y4K1 1723 aa13.27□□□□□ -0.29
CUX1-205ENST00000425244 LARP1Q6PKG0 1096 aaKnown RBP13.26□□□□□ -0.29
CUX1-205ENST00000425244 ARXQ96QS3 562 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 TSPYL4Q9UJ04 414 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 CPDO75976 1380 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 CAMTA1Q9Y6Y1 1673 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 MAP3K5Q99683 1374 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 CHL1O00533 1208 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 TBC1D9Q6ZT07 1266 aa13.26□□□□□ -0.29
CUX1-205ENST00000425244 TATP17735 454 aaPredicted RBP13.25□□□□□ -0.29
CUX1-205ENST00000425244 CHMP5Q9NZZ3 219 aa13.25□□□□□ -0.29
CUX1-205ENST00000425244 PHLPP1O60346 1717 aa13.24□□□□□ -0.29
CUX1-205ENST00000425244 COL18A1P39060 1754 aa13.24□□□□□ -0.29
CUX1-205ENST00000425244 RBM25P49756 843 aaKnown RBP13.24□□□□□ -0.29
CUX1-205ENST00000425244 HSP90AB1P08238 724 aaKnown RBP13.24□□□□□ -0.29
CUX1-205ENST00000425244 WDR17Q8IZU2 1322 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 SLC4A2P04920 1241 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 CERKQ8TCT0 537 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 NECTIN2Q92692 538 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 GZF1Q9H116 711 aaPredicted RBP13.23□□□□□ -0.29
CUX1-205ENST00000425244 MCM4P33991 863 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 INTS3Q68E01 1043 aaKnown RBP13.23□□□□□ -0.29
CUX1-205ENST00000425244 SLC4A10Q6U841 1118 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 C16orf71Q8IYS4 520 aaPredicted RBP13.23□□□□□ -0.29
CUX1-205ENST00000425244 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
CUX1-205ENST00000425244 ABCA3Q99758 1704 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 HSP90AA1P07900 732 aaKnown RBP13.22□□□□□ -0.29
CUX1-205ENST00000425244 TEFQ10587 303 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 AKAP4Q5JQC9 854 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 MEIS3Q99687 375 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 MEGF6O75095 1541 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 COL5A2P05997 1499 aaPredicted RBP13.22□□□□□ -0.29
CUX1-205ENST00000425244 CRB1P82279 1406 aa13.22□□□□□ -0.29
CUX1-205ENST00000425244 AHDC1Q5TGY3 1603 aaPredicted RBP13.22□□□□□ -0.29
CUX1-205ENST00000425244 CDC45O75419 566 aa13.21□□□□□ -0.29
CUX1-205ENST00000425244 DCTPP1Q9H773 170 aa13.21□□□□□ -0.29
CUX1-205ENST00000425244 SMARCA5O60264 1052 aaPredicted RBP13.21□□□□□ -0.29
CUX1-205ENST00000425244 GSPT1P15170 499 aaKnown RBP13.21□□□□□ -0.29
CUX1-205ENST00000425244 PLEKHM2Q8IWE5 1019 aa13.21□□□□□ -0.29
CUX1-205ENST00000425244 DDX54Q8TDD1 881 aaKnown RBP13.21□□□□□ -0.29
CUX1-205ENST00000425244 OTUD7AQ8TE49 926 aaPredicted RBP13.21□□□□□ -0.29
CUX1-205ENST00000425244 F6X3S4 739 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 ANKRD44Q8N8A2 993 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 RBM42Q9BTD8 480 aaKnown RBP13.2□□□□□ -0.3
CUX1-205ENST00000425244 SPG7Q9UQ90 795 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 TAF7Q15545 349 aaPredicted RBP13.2□□□□□ -0.3
CUX1-205ENST00000425244 CEP85Q6P2H3 762 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 CCDC9Q9Y3X0 531 aaKnown RBP13.2□□□□□ -0.3
CUX1-205ENST00000425244 RGS12O14924 1447 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 HTATSF1O43719 755 aaKnown RBP13.2□□□□□ -0.3
CUX1-205ENST00000425244 G2E3Q7L622 706 aa13.2□□□□□ -0.3
CUX1-205ENST00000425244 CD2BP2O95400 341 aaKnown RBP13.19□□□□□ -0.3
CUX1-205ENST00000425244 SNX21Q969T3 373 aa13.19□□□□□ -0.3
CUX1-205ENST00000425244 KIF2CQ99661 725 aa13.19□□□□□ -0.3
CUX1-205ENST00000425244 PTPRCP08575 1304 aa13.19□□□□□ -0.3
CUX1-205ENST00000425244 COL16A1Q07092 1604 aaPredicted RBP13.19□□□□□ -0.3
CUX1-205ENST00000425244 KCNQ3O43525 872 aa13.19□□□□□ -0.3
CUX1-205ENST00000425244 BTBD11A6QL63 1104 aa13.18□□□□□ -0.3
CUX1-205ENST00000425244 RNMTO43148 476 aaKnown RBP13.18□□□□□ -0.3
CUX1-205ENST00000425244 RPAP2Q8IXW5 612 aaPredicted RBP13.18□□□□□ -0.3
CUX1-205ENST00000425244 ATP10DQ9P241 1426 aa13.18□□□□□ -0.3
CUX1-205ENST00000425244 CYP27B1O15528 508 aa13.18□□□□□ -0.3
CUX1-205ENST00000425244 TTC22Q5TAA0 569 aa13.18□□□□□ -0.3
CUX1-205ENST00000425244 C8orf37Q96NL8 207 aa13.18□□□□□ -0.3
CUX1-205ENST00000425244 IL2RBP14784 551 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 PHKG2P15735 406 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 CARD10Q9BWT7 1032 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 NCAPD2Q15021 1401 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 TRAK2O60296 914 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 IFNL2Q8IZJ0 200 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 NFATC2IPQ8NCF5 419 aa13.17□□□□□ -0.3
CUX1-205ENST00000425244 ZCRB1Q8TBF4 217 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms