RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 ATG3Q9NT62 314 aa23.34■■□□□ 1.33
CHCHD3-202ENST00000423635 WASHC2AQ641Q2 1341 aa23.34■■□□□ 1.33
CHCHD3-202ENST00000423635 PXDNLA1KZ92 1463 aa23.34■■□□□ 1.33
CHCHD3-202ENST00000423635 NLGN1Q8N2Q7 840 aa23.33■■□□□ 1.33
CHCHD3-202ENST00000423635 KIF20BQ96Q89 1820 aa23.33■■□□□ 1.33
CHCHD3-202ENST00000423635 KIF13BQ9NQT8 1826 aa23.33■■□□□ 1.32
CHCHD3-202ENST00000423635 PHKG2P15735 406 aa23.33■■□□□ 1.32
CHCHD3-202ENST00000423635 TRAPPC3LQ5T215 181 aa23.33■■□□□ 1.32
CHCHD3-202ENST00000423635 BCS1LQ9Y276 419 aa23.32■■□□□ 1.32
CHCHD3-202ENST00000423635 A0A0G2JLW4 131 aa23.31■■□□□ 1.32
CHCHD3-202ENST00000423635 RTCBQ9Y3I0 505 aaKnown RBP23.31■■□□□ 1.32
CHCHD3-202ENST00000423635 PPM1GO15355 546 aaPredicted RBP23.3■■□□□ 1.32
CHCHD3-202ENST00000423635 KIAA1551Q9HCM1 1747 aa23.29■■□□□ 1.32
CHCHD3-202ENST00000423635 RC3H1Q5TC82 1133 aaKnown RBP23.29■■□□□ 1.32
CHCHD3-202ENST00000423635 ADRA2BP18089 450 aa23.28■■□□□ 1.32
CHCHD3-202ENST00000423635 ARHGAP27Q6ZUM4 889 aa23.28■■□□□ 1.32
CHCHD3-202ENST00000423635 ARHGEF1Q92888 912 aaKnown RBP23.28■■□□□ 1.32
CHCHD3-202ENST00000423635 SLC4A9Q96Q91 983 aa23.28■■□□□ 1.32
CHCHD3-202ENST00000423635 C10orf71Q711Q0 1435 aa23.27■■□□□ 1.32
CHCHD3-202ENST00000423635 KDRP35968 1356 aa23.27■■□□□ 1.32
CHCHD3-202ENST00000423635 PLEKHG2Q9H7P9 1386 aa23.26■■□□□ 1.31
CHCHD3-202ENST00000423635 N4BP2Q86UW6 1770 aaPredicted RBP23.26■■□□□ 1.31
CHCHD3-202ENST00000423635 DPEP1P16444 411 aa23.26■■□□□ 1.31
CHCHD3-202ENST00000423635 NMRK2Q9NPI5 230 aa23.26■■□□□ 1.31
CHCHD3-202ENST00000423635 CCDC87Q9NVE4 849 aa23.26■■□□□ 1.31
CHCHD3-202ENST00000423635 ANKRD26Q9UPS8 1709 aa23.25■■□□□ 1.31
CHCHD3-202ENST00000423635 ERVV-2B6SEH9 535 aa23.25■■□□□ 1.31
CHCHD3-202ENST00000423635 GYS1P13807 737 aa23.25■■□□□ 1.31
CHCHD3-202ENST00000423635 POLKQ9UBT6 870 aa23.25■■□□□ 1.31
CHCHD3-202ENST00000423635 RPS6KA4O75676 772 aa23.24■■□□□ 1.31
CHCHD3-202ENST00000423635 FCHSD2O94868 740 aa23.24■■□□□ 1.31
CHCHD3-202ENST00000423635 KCNA3P22001 575 aa23.24■■□□□ 1.31
CHCHD3-202ENST00000423635 RBM46Q8TBY0 533 aaKnown RBP23.24■■□□□ 1.31
CHCHD3-202ENST00000423635 ZNF831Q5JPB2 1677 aa23.23■■□□□ 1.31
CHCHD3-202ENST00000423635 CNTNAP4Q9C0A0 1308 aa23.23■■□□□ 1.31
CHCHD3-202ENST00000423635 RFC4P35249 363 aa23.22■■□□□ 1.31
CHCHD3-202ENST00000423635 PARP3Q9Y6F1 533 aa23.22■■□□□ 1.31
CHCHD3-202ENST00000423635 RBM42Q9BTD8 480 aaKnown RBP23.21■■□□□ 1.31
CHCHD3-202ENST00000423635 EIF4A2Q14240 407 aaKnown RBP23.2■■□□□ 1.3
CHCHD3-202ENST00000423635 C9orf131Q5VYM1 1079 aa23.2■■□□□ 1.3
CHCHD3-202ENST00000423635 DCAF5Q96JK2 942 aa23.2■■□□□ 1.3
CHCHD3-202ENST00000423635 C4AP0C0L4 1744 aa23.19■■□□□ 1.3
CHCHD3-202ENST00000423635 HSP90AB1P08238 724 aaKnown RBP23.19■■□□□ 1.3
CHCHD3-202ENST00000423635 PIM2Q9P1W9 311 aa23.19■■□□□ 1.3
CHCHD3-202ENST00000423635 BRCA1P38398 1863 aaKnown RBP23.19■■□□□ 1.3
CHCHD3-202ENST00000423635 FSTL1Q12841 308 aa23.18■■□□□ 1.3
CHCHD3-202ENST00000423635 C16orf71Q8IYS4 520 aaPredicted RBP23.17■■□□□ 1.3
CHCHD3-202ENST00000423635 JMYQ8N9B5 988 aa23.17■■□□□ 1.3
CHCHD3-202ENST00000423635 KLRG1Q96E93 195 aa23.17■■□□□ 1.3
CHCHD3-202ENST00000423635 COL5A3P25940 1745 aaPredicted RBP23.16■■□□□ 1.3
CHCHD3-202ENST00000423635 ARFGEF1Q9Y6D6 1849 aa23.15■■□□□ 1.3
CHCHD3-202ENST00000423635 WDR90Q96KV7 1748 aa23.14■■□□□ 1.3
CHCHD3-202ENST00000423635 PLEKHO1Q53GL0 409 aaPredicted RBP23.14■■□□□ 1.3
CHCHD3-202ENST00000423635 DALRD3Q5D0E6 543 aaKnown RBP23.14■■□□□ 1.3
CHCHD3-202ENST00000423635 MYH14Q7Z406 1995 aaKnown RBP23.14■■□□□ 1.29
CHCHD3-202ENST00000423635 KDM2BQ8NHM5 1336 aa23.14■■□□□ 1.29
CHCHD3-202ENST00000423635 CABP4P57796 275 aa23.13■■□□□ 1.29
CHCHD3-202ENST00000423635 HTRA3P83110 453 aa23.12■■□□□ 1.29
CHCHD3-202ENST00000423635 AMOTQ4VCS5 1084 aa23.12■■□□□ 1.29
CHCHD3-202ENST00000423635 KDM6AO15550 1401 aaPredicted RBP23.11■■□□□ 1.29
CHCHD3-202ENST00000423635 CRKLP46109 303 aaKnown RBP23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 FKBP8Q14318 412 aa23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 COL13A1Q5TAT6 717 aaPredicted RBP23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 RRAGCQ9HB90 399 aa23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 RNF181Q9P0P0 153 aa23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 USP42Q9H9J4 1324 aaKnown RBP23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 KCPQ6ZWJ8 1503 aa23.1■■□□□ 1.29
CHCHD3-202ENST00000423635 DDR1Q08345 913 aa23.09■■□□□ 1.29
CHCHD3-202ENST00000423635 SRP68Q9UHB9 627 aaKnown RBP23.09■■□□□ 1.29
CHCHD3-202ENST00000423635 PTCD1O75127 700 aaKnown RBP23.08■■□□□ 1.29
CHCHD3-202ENST00000423635 TM4SF1P30408 202 aa23.08■■□□□ 1.29
CHCHD3-202ENST00000423635 MTHFSP49914 203 aa23.08■■□□□ 1.29
CHCHD3-202ENST00000423635 ZNF530Q6P9A1 599 aaPredicted RBP23.08■■□□□ 1.29
CHCHD3-202ENST00000423635 TNNT2P45379 298 aaPredicted RBP23.08■■□□□ 1.28
CHCHD3-202ENST00000423635 NFATC2IPQ8NCF5 419 aa23.08■■□□□ 1.28
CHCHD3-202ENST00000423635 CHRNA5P30532 468 aa23.07■■□□□ 1.28
CHCHD3-202ENST00000423635 POLRMTO00411 1230 aaKnown RBP23.06■■□□□ 1.28
CHCHD3-202ENST00000423635 INTS5Q6P9B9 1019 aaKnown RBP23.06■■□□□ 1.28
CHCHD3-202ENST00000423635 PCNTO95613 3336 aa23.05■■□□□ 1.28
CHCHD3-202ENST00000423635 SMC1BQ8NDV3 1235 aa23.05■■□□□ 1.28
CHCHD3-202ENST00000423635 SBF1O95248 1867 aa23.04■■□□□ 1.28
CHCHD3-202ENST00000423635 ZC3H4Q9UPT8 1303 aaKnown RBP23.04■■□□□ 1.28
CHCHD3-202ENST00000423635 C1orf141Q5JVX7 400 aa23.04■■□□□ 1.28
CHCHD3-202ENST00000423635 TNRC6CQ9HCJ0 1690 aaKnown RBP23.01■■□□□ 1.27
CHCHD3-202ENST00000423635 ZPR1O75312 459 aa23■■□□□ 1.27
CHCHD3-202ENST00000423635 USPL1Q5W0Q7 1092 aa23■■□□□ 1.27
CHCHD3-202ENST00000423635 AEBP1Q8IUX7 1158 aa23■■□□□ 1.27
CHCHD3-202ENST00000423635 ADAMTS7Q9UKP4 1686 aa22.99■■□□□ 1.27
CHCHD3-202ENST00000423635 TJP1Q07157 1748 aa22.98■■□□□ 1.27
CHCHD3-202ENST00000423635 GLTPD2A6NH11 291 aa22.98■■□□□ 1.27
CHCHD3-202ENST00000423635 TNS4Q8IZW8 715 aa22.98■■□□□ 1.27
CHCHD3-202ENST00000423635 TIMELESSQ9UNS1 1208 aa22.98■■□□□ 1.27
CHCHD3-202ENST00000423635 VEGFAP15692 232 aaPredicted RBP22.97■■□□□ 1.27
CHCHD3-202ENST00000423635 LMNB1P20700 586 aa22.97■■□□□ 1.27
CHCHD3-202ENST00000423635 SOS1Q07889 1333 aaPredicted RBP22.96■■□□□ 1.27
CHCHD3-202ENST00000423635 PRELPP51888 382 aa22.96■■□□□ 1.27
CHCHD3-202ENST00000423635 RASSF7Q02833 373 aa22.96■■□□□ 1.27
CHCHD3-202ENST00000423635 SULT6B1Q6IMI4 303 aa22.96■■□□□ 1.27
CHCHD3-202ENST00000423635 DNAJC10Q8IXB1 793 aa22.96■■□□□ 1.27
CHCHD3-202ENST00000423635 NARFQ9UHQ1 456 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms