RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PANK3Q9H999 370 aa11.19□□□□□ -0.62
VIM-202ENST00000421459 GPBP1L1Q9HC44 474 aaPredicted RBP11.19□□□□□ -0.62
VIM-202ENST00000421459 A0A0G2JLW4 131 aa11.18□□□□□ -0.62
VIM-202ENST00000421459 HSPA5P11021 654 aaKnown RBP11.18□□□□□ -0.62
VIM-202ENST00000421459 AEBP1Q8IUX7 1158 aa11.18□□□□□ -0.62
VIM-202ENST00000421459 MAP2P11137 1827 aaKnown RBP11.18□□□□□ -0.62
VIM-202ENST00000421459 ADCY9O60503 1353 aa11.17□□□□□ -0.62
VIM-202ENST00000421459 TRAPPC3LQ5T215 181 aa11.17□□□□□ -0.62
VIM-202ENST00000421459 ARHGEF1Q92888 912 aaKnown RBP11.17□□□□□ -0.62
VIM-202ENST00000421459 UBR3Q6ZT12 1888 aa11.17□□□□□ -0.62
VIM-202ENST00000421459 KDRP35968 1356 aa11.16□□□□□ -0.62
VIM-202ENST00000421459 PTCD1O75127 700 aaKnown RBP11.16□□□□□ -0.62
VIM-202ENST00000421459 HMGB2P26583 209 aaKnown RBP11.16□□□□□ -0.62
VIM-202ENST00000421459 ZNF530Q6P9A1 599 aaPredicted RBP11.16□□□□□ -0.62
VIM-202ENST00000421459 RTCBQ9Y3I0 505 aaKnown RBP11.16□□□□□ -0.62
VIM-202ENST00000421459 ANKRD26Q9UPS8 1709 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 ERVV-2B6SEH9 535 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 GYS1P13807 737 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 CABP4P57796 275 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 PLEKHO1Q53GL0 409 aaPredicted RBP11.15□□□□□ -0.62
VIM-202ENST00000421459 DCAF5Q96JK2 942 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 SRP68Q9UHB9 627 aaKnown RBP11.15□□□□□ -0.62
VIM-202ENST00000421459 BCS1LQ9Y276 419 aa11.15□□□□□ -0.62
VIM-202ENST00000421459 KDM6AO15550 1401 aaPredicted RBP11.15□□□□□ -0.62
VIM-202ENST00000421459 PXDNLA1KZ92 1463 aa11.14□□□□□ -0.63
VIM-202ENST00000421459 KIF3CO14782 793 aa11.14□□□□□ -0.63
VIM-202ENST00000421459 DPEP1P16444 411 aa11.14□□□□□ -0.63
VIM-202ENST00000421459 NFATC2IPQ8NCF5 419 aa11.14□□□□□ -0.63
VIM-202ENST00000421459 TIMELESSQ9UNS1 1208 aa11.14□□□□□ -0.63
VIM-202ENST00000421459 RPS6KA4O75676 772 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 RFC4P35249 363 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 MTHFSP49914 203 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 EIF4G2P78344 907 aaKnown RBP eCLIP11.13□□□□□ -0.63
VIM-202ENST00000421459 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
VIM-202ENST00000421459 SULT6B1Q6IMI4 303 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 ARHGAP27Q6ZUM4 889 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 MORC1Q86VD1 984 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 NLGN1Q8N2Q7 840 aa11.13□□□□□ -0.63
VIM-202ENST00000421459 CICQ96RK0 1608 aaPredicted RBP11.13□□□□□ -0.63
VIM-202ENST00000421459 HSPA6P17066 643 aa11.12□□□□□ -0.63
VIM-202ENST00000421459 KCNA3P22001 575 aa11.12□□□□□ -0.63
VIM-202ENST00000421459 CNTNAP4Q9C0A0 1308 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 FCHSD2O94868 740 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 HSP90AB1P08238 724 aaKnown RBP11.11□□□□□ -0.63
VIM-202ENST00000421459 IL13P35225 146 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 CRKLP46109 303 aaKnown RBP11.11□□□□□ -0.63
VIM-202ENST00000421459 TGFB2P61812 414 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 FKBP8Q14318 412 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 AMOTQ4VCS5 1084 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 LGR6Q9HBX8 967 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 PARP3Q9Y6F1 533 aa11.11□□□□□ -0.63
VIM-202ENST00000421459 C10orf71Q711Q0 1435 aa11.1□□□□□ -0.63
VIM-202ENST00000421459 DDR1Q08345 913 aa11.1□□□□□ -0.63
VIM-202ENST00000421459 C1orf141Q5JVX7 400 aa11.1□□□□□ -0.63
VIM-202ENST00000421459 NMRK2Q9NPI5 230 aa11.1□□□□□ -0.63
VIM-202ENST00000421459 CCDC87Q9NVE4 849 aa11.1□□□□□ -0.63
VIM-202ENST00000421459 N4BP2Q86UW6 1770 aaPredicted RBP11.09□□□□□ -0.63
VIM-202ENST00000421459 ADRA2BP18089 450 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 CHRNA5P30532 468 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 SLC39A6Q13433 755 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 IFFO2Q5TF58 517 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 INTS5Q6P9B9 1019 aaKnown RBP11.09□□□□□ -0.63
VIM-202ENST00000421459 DNAJC10Q8IXB1 793 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 KIAA1551Q9HCM1 1747 aa11.09□□□□□ -0.63
VIM-202ENST00000421459 HMOX1P09601 288 aa11.08□□□□□ -0.64
VIM-202ENST00000421459 CNGB1Q14028 1251 aaPredicted RBP11.07□□□□□ -0.64
VIM-202ENST00000421459 C9orf131Q5VYM1 1079 aa11.07□□□□□ -0.64
VIM-202ENST00000421459 USPL1Q5W0Q7 1092 aa11.07□□□□□ -0.64
VIM-202ENST00000421459 KNSTRNQ9Y448 316 aa11.07□□□□□ -0.64
VIM-202ENST00000421459 USP42Q9H9J4 1324 aaKnown RBP11.07□□□□□ -0.64
VIM-202ENST00000421459 POLRMTO00411 1230 aaKnown RBP11.06□□□□□ -0.64
VIM-202ENST00000421459 TM4SF1P30408 202 aa11.06□□□□□ -0.64
VIM-202ENST00000421459 HTRA3P83110 453 aa11.06□□□□□ -0.64
VIM-202ENST00000421459 AMER1Q5JTC6 1135 aaPredicted RBP11.06□□□□□ -0.64
VIM-202ENST00000421459 SLC52A2Q9HAB3 445 aa11.06□□□□□ -0.64
VIM-202ENST00000421459 C4AP0C0L4 1744 aa11.06□□□□□ -0.64
VIM-202ENST00000421459 COL5A3P25940 1745 aaPredicted RBP11.06□□□□□ -0.64
VIM-202ENST00000421459 CLSPNQ9HAW4 1339 aa11.06□□□□□ -0.64
VIM-202ENST00000421459 PLEKHG2Q9H7P9 1386 aa11.05□□□□□ -0.64
VIM-202ENST00000421459 RNMTO43148 476 aaKnown RBP11.05□□□□□ -0.64
VIM-202ENST00000421459 MTHFSDQ2M296 383 aaKnown RBP11.05□□□□□ -0.64
VIM-202ENST00000421459 AKAP4Q5JQC9 854 aa11.05□□□□□ -0.64
VIM-202ENST00000421459 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
VIM-202ENST00000421459 PIM2Q9P1W9 311 aa11.05□□□□□ -0.64
VIM-202ENST00000421459 MYH14Q7Z406 1995 aaKnown RBP11.05□□□□□ -0.64
VIM-202ENST00000421459 TOMM70O94826 608 aa11.04□□□□□ -0.64
VIM-202ENST00000421459 CYP19A1P11511 503 aaPredicted RBP11.04□□□□□ -0.64
VIM-202ENST00000421459 DALRD3Q5D0E6 543 aaKnown RBP11.04□□□□□ -0.64
VIM-202ENST00000421459 CC2D1BQ5T0F9 858 aaKnown RBP11.04□□□□□ -0.64
VIM-202ENST00000421459 DNAJC5GQ8N7S2 189 aa11.04□□□□□ -0.64
VIM-202ENST00000421459 BCL2L12Q9HB09 334 aa11.04□□□□□ -0.64
VIM-202ENST00000421459 ZBTB1Q9Y2K1 713 aa11.04□□□□□ -0.64
VIM-202ENST00000421459 KIF13BQ9NQT8 1826 aa11.04□□□□□ -0.64
VIM-202ENST00000421459 ZPR1O75312 459 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 RASSF7Q02833 373 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 NFIXQ14938 502 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 RRAGCQ9HB90 399 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 RNF181Q9P0P0 153 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 TJP1Q07157 1748 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 SOS1Q07889 1333 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms