RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 KDM6AO15550 1401 aaPredicted RBP26.72■■□□□ 1.87
GPC1-202ENST00000420138 PARP4Q9UKK3 1724 aaKnown RBP26.72■■□□□ 1.87
GPC1-202ENST00000420138 PCDHB15Q9Y5E8 787 aa26.72■■□□□ 1.87
GPC1-202ENST00000420138 PKD1L3Q7Z443 1732 aa26.72■■□□□ 1.87
GPC1-202ENST00000420138 SOS1Q07889 1333 aaPredicted RBP26.72■■□□□ 1.87
GPC1-202ENST00000420138 CYP27B1O15528 508 aa26.72■■□□□ 1.87
GPC1-202ENST00000420138 LARP1Q6PKG0 1096 aaKnown RBP26.72■■□□□ 1.87
GPC1-202ENST00000420138 DDX19BQ9UMR2 479 aa26.72■■□□□ 1.87
GPC1-202ENST00000420138 IGHDP01880 384 aa26.71■■□□□ 1.87
GPC1-202ENST00000420138 EIF4A1P60842 406 aaKnown RBP26.71■■□□□ 1.87
GPC1-202ENST00000420138 ITPRIPQ8IWB1 547 aa26.71■■□□□ 1.87
GPC1-202ENST00000420138 KDM3BQ7LBC6 1761 aa26.71■■□□□ 1.87
GPC1-202ENST00000420138 RGS12O14924 1447 aa26.7■■□□□ 1.87
GPC1-202ENST00000420138 KCNQ3O43525 872 aa26.7■■□□□ 1.87
GPC1-202ENST00000420138 IFNL2Q8IZJ0 200 aa26.69■■□□□ 1.86
GPC1-202ENST00000420138 NRAPQ86VF7 1730 aa26.69■■□□□ 1.86
GPC1-202ENST00000420138 BTBD11A6QL63 1104 aa26.69■■□□□ 1.86
GPC1-202ENST00000420138 HSPA1LP34931 641 aa26.69■■□□□ 1.86
GPC1-202ENST00000420138 API5Q9BZZ5 524 aaKnown RBP26.69■■□□□ 1.86
GPC1-202ENST00000420138 NWD2Q9ULI1 1742 aa26.69■■□□□ 1.86
GPC1-202ENST00000420138 SLC4A2P04920 1241 aa26.67■■□□□ 1.86
GPC1-202ENST00000420138 ZBTB40Q9NUA8 1239 aa26.67■■□□□ 1.86
GPC1-202ENST00000420138 SIPA1L3O60292 1781 aaPredicted RBP26.66■■□□□ 1.86
GPC1-202ENST00000420138 PTPRCP08575 1304 aa26.65■■□□□ 1.86
GPC1-202ENST00000420138 G2E3Q7L622 706 aa26.65■■□□□ 1.86
GPC1-202ENST00000420138 SPATA31A6Q5VVP1 1343 aa26.64■■□□□ 1.86
GPC1-202ENST00000420138 CCDC30Q5VVM6 783 aa26.64■■□□□ 1.85
GPC1-202ENST00000420138 HEG1Q9ULI3 1381 aa26.64■■□□□ 1.85
GPC1-202ENST00000420138 ZBTB7BO15156 539 aaPredicted RBP26.63■■□□□ 1.85
GPC1-202ENST00000420138 DCAF5Q96JK2 942 aa26.63■■□□□ 1.85
GPC1-202ENST00000420138 SLC52A2Q9HAB3 445 aa26.63■■□□□ 1.85
GPC1-202ENST00000420138 HOXB7P09629 217 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 IL2RBP14784 551 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 SKAP1Q86WV1 359 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 MRC1P22897 1456 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 ZCRB1Q8TBF4 217 aaKnown RBP26.62■■□□□ 1.85
GPC1-202ENST00000420138 USP35Q9P2H5 1018 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 SCN11AQ9UI33 1791 aa26.62■■□□□ 1.85
GPC1-202ENST00000420138 WNK3Q9BYP7 1800 aa26.61■■□□□ 1.85
GPC1-202ENST00000420138 INTS3Q68E01 1043 aaKnown RBP26.6■■□□□ 1.85
GPC1-202ENST00000420138 NECTIN2Q92692 538 aa26.6■■□□□ 1.85
GPC1-202ENST00000420138 STK31Q9BXU1 1019 aa26.6■■□□□ 1.85
GPC1-202ENST00000420138 SLIT2O94813 1529 aa26.59■■□□□ 1.85
GPC1-202ENST00000420138 HSP90AB1P08238 724 aaKnown RBP26.59■■□□□ 1.85
GPC1-202ENST00000420138 NFATC2IPQ8NCF5 419 aa26.59■■□□□ 1.85
GPC1-202ENST00000420138 LRP6O75581 1613 aa26.59■■□□□ 1.85
GPC1-202ENST00000420138 HDGFL1Q5TGJ6 251 aa26.58■■□□□ 1.85
GPC1-202ENST00000420138 PCDH11XQ9BZA7 1347 aa26.58■■□□□ 1.85
GPC1-202ENST00000420138 PCDH11YQ9BZA8 1340 aa26.58■■□□□ 1.85
GPC1-202ENST00000420138 SHANK3Q9BYB0 1731 aa26.57■■□□□ 1.84
GPC1-202ENST00000420138 GIGYF1O75420 1035 aaPredicted RBP26.56■■□□□ 1.84
GPC1-202ENST00000420138 NKX1-1Q15270 411 aaPredicted RBP26.56■■□□□ 1.84
GPC1-202ENST00000420138 C8orf37Q96NL8 207 aa26.56■■□□□ 1.84
GPC1-202ENST00000420138 FLIIQ13045 1269 aa26.55■■□□□ 1.84
GPC1-202ENST00000420138 ZNF790Q6PG37 636 aa26.55■■□□□ 1.84
GPC1-202ENST00000420138 NGLY1Q96IV0 654 aa26.55■■□□□ 1.84
GPC1-202ENST00000420138 DISP2A7MBM2 1401 aa26.55■■□□□ 1.84
GPC1-202ENST00000420138 SLC39A6Q13433 755 aa26.54■■□□□ 1.84
GPC1-202ENST00000420138 HDAC1Q13547 482 aaPredicted RBP26.54■■□□□ 1.84
GPC1-202ENST00000420138 RWDD1Q9H446 243 aaPredicted RBP26.54■■□□□ 1.84
GPC1-202ENST00000420138 EIF2S2P20042 333 aaKnown RBP26.53■■□□□ 1.84
GPC1-202ENST00000420138 PRAMEF22A3QJZ6 481 aa26.52■■□□□ 1.84
GPC1-202ENST00000420138 CHMP4BQ9H444 224 aaKnown RBP26.52■■□□□ 1.84
GPC1-202ENST00000420138 F6X3S4 739 aa26.51■■□□□ 1.83
GPC1-202ENST00000420138 CHPF2Q9P2E5 772 aa26.51■■□□□ 1.83
GPC1-202ENST00000420138 SPATA31A1Q5TZJ5 1347 aa26.5■■□□□ 1.83
GPC1-202ENST00000420138 PHAXQ9H814 394 aaKnown RBP26.5■■□□□ 1.83
GPC1-202ENST00000420138 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.5■■□□□ 1.83
GPC1-202ENST00000420138 CABP4P57796 275 aa26.49■■□□□ 1.83
GPC1-202ENST00000420138 MEX3CQ5U5Q3 659 aaKnown RBP26.49■■□□□ 1.83
GPC1-202ENST00000420138 UNC5CLQ8IV45 518 aa26.49■■□□□ 1.83
GPC1-202ENST00000420138 DDX54Q8TDD1 881 aaKnown RBP26.49■■□□□ 1.83
GPC1-202ENST00000420138 CHMP4AQ9BY43 222 aa26.49■■□□□ 1.83
GPC1-202ENST00000420138 CCDC9Q9Y3X0 531 aaKnown RBP26.49■■□□□ 1.83
GPC1-202ENST00000420138 BCL9LQ86UU0 1499 aa26.48■■□□□ 1.83
GPC1-202ENST00000420138 FKBP5Q13451 457 aaPredicted RBP26.48■■□□□ 1.83
GPC1-202ENST00000420138 C1orf115Q9H7X2 142 aa26.48■■□□□ 1.83
GPC1-202ENST00000420138 ERVV-2B6SEH9 535 aa26.47■■□□□ 1.83
GPC1-202ENST00000420138 ZNF496Q96IT1 587 aaPredicted RBP26.47■■□□□ 1.83
GPC1-202ENST00000420138 SPATA31A5Q5VU36 1347 aa26.47■■□□□ 1.83
GPC1-202ENST00000420138 SPATA31A7Q8IWB4 1347 aa26.47■■□□□ 1.83
GPC1-202ENST00000420138 FNBP4Q8N3X1 1017 aaPredicted RBP26.46■■□□□ 1.83
GPC1-202ENST00000420138 THRAP3Q9Y2W1 955 aaKnown RBP26.46■■□□□ 1.83
GPC1-202ENST00000420138 CCT4P50991 539 aaKnown RBP26.45■■□□□ 1.82
GPC1-202ENST00000420138 SIRT2Q8IXJ6 389 aa26.45■■□□□ 1.82
GPC1-202ENST00000420138 DBF4Q9UBU7 674 aaPredicted RBP26.44■■□□□ 1.82
GPC1-202ENST00000420138 CACNA1FO60840 1977 aa26.44■■□□□ 1.82
GPC1-202ENST00000420138 ANXA1P04083 346 aa26.44■■□□□ 1.82
GPC1-202ENST00000420138 SLC4A10Q6U841 1118 aa26.44■■□□□ 1.82
GPC1-202ENST00000420138 SMC5Q8IY18 1101 aa26.44■■□□□ 1.82
GPC1-202ENST00000420138 GLI3P10071 1580 aa26.43■■□□□ 1.82
GPC1-202ENST00000420138 PROSER3Q2NL68 480 aa26.43■■□□□ 1.82
GPC1-202ENST00000420138 MEIS3Q99687 375 aa26.43■■□□□ 1.82
GPC1-202ENST00000420138 CDCA7Q9BWT1 371 aaPredicted RBP26.43■■□□□ 1.82
GPC1-202ENST00000420138 USP21Q9UK80 565 aa26.43■■□□□ 1.82
GPC1-202ENST00000420138 PDIA6Q15084 440 aa26.42■■□□□ 1.82
GPC1-202ENST00000420138 PDZRN3Q9UPQ7 1066 aa26.42■■□□□ 1.82
GPC1-202ENST00000420138 PXDNLA1KZ92 1463 aa26.41■■□□□ 1.82
GPC1-202ENST00000420138 C5P01031 1676 aa26.41■■□□□ 1.82
GPC1-202ENST00000420138 VPS72Q15906 364 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms