RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 SMARCC1Q92922 1105 aaPredicted RBP20.61■□□□□ 0.89
UBXN4-203ENST00000416538 TMOD3Q9NYL9 352 aa20.61■□□□□ 0.89
UBXN4-203ENST00000416538 C4AP0C0L4 1744 aa20.61■□□□□ 0.89
UBXN4-203ENST00000416538 MTHFSP49914 203 aa20.6■□□□□ 0.89
UBXN4-203ENST00000416538 ITPK1Q13572 414 aa20.6■□□□□ 0.89
UBXN4-203ENST00000416538 SULT6B1Q6IMI4 303 aa20.6■□□□□ 0.89
UBXN4-203ENST00000416538 ZNF530Q6P9A1 599 aaPredicted RBP20.6■□□□□ 0.89
UBXN4-203ENST00000416538 LINC00116Q8NCU8 138 aa20.6■□□□□ 0.89
UBXN4-203ENST00000416538 NPC1L1Q9UHC9 1359 aa20.59■□□□□ 0.89
UBXN4-203ENST00000416538 LOC102724428A0A0B4J2F2 783 aa20.59■□□□□ 0.89
UBXN4-203ENST00000416538 SIK1P57059 783 aa20.59■□□□□ 0.89
UBXN4-203ENST00000416538 MSL1Q68DK7 614 aa20.59■□□□□ 0.89
UBXN4-203ENST00000416538 ATG3Q9NT62 314 aa20.59■□□□□ 0.89
UBXN4-203ENST00000416538 UTRNP46939 3433 aa20.58■□□□□ 0.88
UBXN4-203ENST00000416538 MRC1P22897 1456 aa20.57■□□□□ 0.88
UBXN4-203ENST00000416538 PLEKHO1Q53GL0 409 aaPredicted RBP20.57■□□□□ 0.88
UBXN4-203ENST00000416538 SLC4A9Q96Q91 983 aa20.57■□□□□ 0.88
UBXN4-203ENST00000416538 NCBP3Q53F19 620 aaKnown RBP20.55■□□□□ 0.88
UBXN4-203ENST00000416538 DCAF5Q96JK2 942 aa20.55■□□□□ 0.88
UBXN4-203ENST00000416538 CNGB1Q14028 1251 aaPredicted RBP20.54■□□□□ 0.88
UBXN4-203ENST00000416538 AMOTQ4VCS5 1084 aa20.54■□□□□ 0.88
UBXN4-203ENST00000416538 NLGN2Q8NFZ4 835 aa20.54■□□□□ 0.88
UBXN4-203ENST00000416538 SIPA1L3O60292 1781 aaPredicted RBP20.54■□□□□ 0.88
UBXN4-203ENST00000416538 UBR2Q8IWV8 1755 aa20.54■□□□□ 0.88
UBXN4-203ENST00000416538 ERVV-2B6SEH9 535 aa20.53■□□□□ 0.88
UBXN4-203ENST00000416538 HMOX1P09601 288 aa20.53■□□□□ 0.88
UBXN4-203ENST00000416538 POLD1P28340 1107 aa20.53■□□□□ 0.88
UBXN4-203ENST00000416538 KLHL34Q8N239 644 aa20.53■□□□□ 0.88
UBXN4-203ENST00000416538 AK7Q96M32 723 aa20.53■□□□□ 0.88
UBXN4-203ENST00000416538 PHF14O94880 888 aa20.52■□□□□ 0.88
UBXN4-203ENST00000416538 YY1P25490 414 aa20.52■□□□□ 0.88
UBXN4-203ENST00000416538 KIAA1551Q9HCM1 1747 aa20.52■□□□□ 0.88
UBXN4-203ENST00000416538 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.51■□□□□ 0.87
UBXN4-203ENST00000416538 HSP90AB1P08238 724 aaKnown RBP20.51■□□□□ 0.87
UBXN4-203ENST00000416538 ATP6V1AP38606 617 aa20.51■□□□□ 0.87
UBXN4-203ENST00000416538 KIF13BQ9NQT8 1826 aa20.5■□□□□ 0.87
UBXN4-203ENST00000416538 KCPQ6ZWJ8 1503 aa20.49■□□□□ 0.87
UBXN4-203ENST00000416538 GNPATO15228 680 aa20.49■□□□□ 0.87
UBXN4-203ENST00000416538 C1orf141Q5JVX7 400 aa20.49■□□□□ 0.87
UBXN4-203ENST00000416538 DIAPH1O60610 1272 aaKnown RBP20.48■□□□□ 0.87
UBXN4-203ENST00000416538 SSFA2P28290 1259 aa20.48■□□□□ 0.87
UBXN4-203ENST00000416538 CABP4P57796 275 aa20.48■□□□□ 0.87
UBXN4-203ENST00000416538 FLAD1Q8NFF5 587 aa20.48■□□□□ 0.87
UBXN4-203ENST00000416538 GOLGB1Q14789 3259 aaKnown RBP20.47■□□□□ 0.87
UBXN4-203ENST00000416538 RBM42Q9BTD8 480 aaKnown RBP20.47■□□□□ 0.87
UBXN4-203ENST00000416538 NFATC2IPQ8NCF5 419 aa20.46■□□□□ 0.87
UBXN4-203ENST00000416538 MTHFSDQ2M296 383 aaKnown RBP20.45■□□□□ 0.86
UBXN4-203ENST00000416538 AKAP4Q5JQC9 854 aa20.45■□□□□ 0.86
UBXN4-203ENST00000416538 LGR6Q9HBX8 967 aa20.45■□□□□ 0.86
UBXN4-203ENST00000416538 CNTNAP4Q9C0A0 1308 aa20.45■□□□□ 0.86
UBXN4-203ENST00000416538 N4BP2Q86UW6 1770 aaPredicted RBP20.44■□□□□ 0.86
UBXN4-203ENST00000416538 PTCD1O75127 700 aaKnown RBP20.43■□□□□ 0.86
UBXN4-203ENST00000416538 BRCA1P38398 1863 aaKnown RBP20.43■□□□□ 0.86
UBXN4-203ENST00000416538 RNMTO43148 476 aaKnown RBP20.42■□□□□ 0.86
UBXN4-203ENST00000416538 YBX3P16989 372 aaKnown RBP eCLIP20.42■□□□□ 0.865e-8■■□□□ 12.7
UBXN4-203ENST00000416538 HMGB2P26583 209 aaKnown RBP20.41■□□□□ 0.86
UBXN4-203ENST00000416538 CACNB1Q02641 598 aaPredicted RBP20.41■□□□□ 0.86
UBXN4-203ENST00000416538 SLC52A2Q9HAB3 445 aa20.41■□□□□ 0.86
UBXN4-203ENST00000416538 DLG5Q8TDM6 1919 aa20.39■□□□□ 0.86
UBXN4-203ENST00000416538 U2SURPO15042 1029 aaKnown RBP20.39■□□□□ 0.85
UBXN4-203ENST00000416538 GPR162Q16538 588 aa20.39■□□□□ 0.85
UBXN4-203ENST00000416538 RC3H1Q5TC82 1133 aaKnown RBP20.39■□□□□ 0.85
UBXN4-203ENST00000416538 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
UBXN4-203ENST00000416538 PPP2R1AP30153 589 aa20.38■□□□□ 0.85
UBXN4-203ENST00000416538 CRKLP46109 303 aaKnown RBP20.38■□□□□ 0.85
UBXN4-203ENST00000416538 SLC39A6Q13433 755 aa20.38■□□□□ 0.85
UBXN4-203ENST00000416538 RTCBQ9Y3I0 505 aaKnown RBP20.38■□□□□ 0.85
UBXN4-203ENST00000416538 ARHGEF1Q92888 912 aaKnown RBP20.37■□□□□ 0.85
UBXN4-203ENST00000416538 CD2APQ9Y5K6 639 aa20.37■□□□□ 0.85
UBXN4-203ENST00000416538 RPS6KA4O75676 772 aa20.36■□□□□ 0.85
UBXN4-203ENST00000416538 DNAJC10Q8IXB1 793 aa20.36■□□□□ 0.85
UBXN4-203ENST00000416538 RSPH6AQ9H0K4 717 aa20.36■□□□□ 0.85
UBXN4-203ENST00000416538 AFDNP55196 1824 aaKnown RBP20.36■□□□□ 0.85
UBXN4-203ENST00000416538 PXDNLA1KZ92 1463 aa20.36■□□□□ 0.85
UBXN4-203ENST00000416538 C10orf71Q711Q0 1435 aa20.36■□□□□ 0.85
UBXN4-203ENST00000416538 MMP10P09238 476 aa20.35■□□□□ 0.85
UBXN4-203ENST00000416538 ZNF784Q8NCA9 323 aaPredicted RBP20.35■□□□□ 0.85
UBXN4-203ENST00000416538 GYS1P13807 737 aa20.34■□□□□ 0.85
UBXN4-203ENST00000416538 TRAPPC3LQ5T215 181 aa20.34■□□□□ 0.85
UBXN4-203ENST00000416538 INTS5Q6P9B9 1019 aaKnown RBP20.34■□□□□ 0.85
UBXN4-203ENST00000416538 PHACTR3Q96KR7 559 aa20.34■□□□□ 0.85
UBXN4-203ENST00000416538 PRKAR2BP31323 418 aa20.33■□□□□ 0.85
UBXN4-203ENST00000416538 IL17REQ8NFR9 667 aa20.33■□□□□ 0.85
UBXN4-203ENST00000416538 SRP68Q9UHB9 627 aaKnown RBP20.33■□□□□ 0.85
UBXN4-203ENST00000416538 WWC3Q9ULE0 1092 aa20.33■□□□□ 0.85
UBXN4-203ENST00000416538 SCN7AQ01118 1682 aa20.32■□□□□ 0.84
UBXN4-203ENST00000416538 CEMIPQ8WUJ3 1361 aa20.32■□□□□ 0.84
UBXN4-203ENST00000416538 NRXN2Q9P2S2 1712 aa20.31■□□□□ 0.84
UBXN4-203ENST00000416538 SOS1Q07889 1333 aaPredicted RBP20.3■□□□□ 0.84
UBXN4-203ENST00000416538 USP42Q9H9J4 1324 aaKnown RBP20.3■□□□□ 0.84
UBXN4-203ENST00000416538 CYP19A1P11511 503 aaPredicted RBP20.3■□□□□ 0.84
UBXN4-203ENST00000416538 GAS2L2Q8NHY3 880 aa20.3■□□□□ 0.84
UBXN4-203ENST00000416538 ARFGEF1Q9Y6D6 1849 aa20.3■□□□□ 0.84
UBXN4-203ENST00000416538 CFAP53Q96M91 514 aa20.29■□□□□ 0.84
UBXN4-203ENST00000416538 CCDC87Q9NVE4 849 aa20.29■□□□□ 0.84
UBXN4-203ENST00000416538 BCORQ6W2J9 1755 aa20.29■□□□□ 0.84
UBXN4-203ENST00000416538 GNAT3A8MTJ3 354 aa20.28■□□□□ 0.84
UBXN4-203ENST00000416538 RFC4P35249 363 aa20.28■□□□□ 0.84
UBXN4-203ENST00000416538 ZBTB1Q9Y2K1 713 aa20.28■□□□□ 0.84
UBXN4-203ENST00000416538 DLEC1Q9Y238 1755 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms