RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 INSM2Q96T92 566 aaPredicted RBP8.32□□□□□ -1.08
VPS54-204ENST00000416400 ESYT1Q9BSJ8 1104 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 SERTAD1Q9UHV2 236 aa8.32□□□□□ -1.08
VPS54-204ENST00000416400 NOVA2Q9UNW9 492 aaKnown RBP8.32□□□□□ -1.08
VPS54-204ENST00000416400 ZBTB7BO15156 539 aaPredicted RBP8.31□□□□□ -1.08
VPS54-204ENST00000416400 DPYDQ12882 1025 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 TRIM46Q7Z4K8 759 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 KIFC2Q96AC6 838 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 XAGE2Q96GT9 111 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 ZFP42Q96MM3 310 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 ETNK1Q9HBU6 452 aa8.31□□□□□ -1.08
VPS54-204ENST00000416400 SRPK2P78362 688 aaKnown RBP8.3□□□□□ -1.08
VPS54-204ENST00000416400 TLR1Q15399 786 aa8.3□□□□□ -1.08
VPS54-204ENST00000416400 AEBP1Q8IUX7 1158 aa8.3□□□□□ -1.08
VPS54-204ENST00000416400 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS54-204ENST00000416400 HINFPQ9BQA5 517 aa8.3□□□□□ -1.08
VPS54-204ENST00000416400 KIAA1024Q9UPX6 916 aa8.3□□□□□ -1.08
VPS54-204ENST00000416400 USTQ9Y2C2 406 aa8.3□□□□□ -1.08
VPS54-204ENST00000416400 TTLL8A6PVC2 850 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 WASLO00401 505 aaPredicted RBP8.29□□□□□ -1.08
VPS54-204ENST00000416400 IL2RAP01589 272 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 GPC1P35052 558 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 SCNN1DP51172 638 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 ELOAQ14241 798 aaKnown RBP8.29□□□□□ -1.08
VPS54-204ENST00000416400 TMEM214Q6NUQ4 689 aaKnown RBP8.29□□□□□ -1.08
VPS54-204ENST00000416400 KDF1Q8NAX2 398 aaPredicted RBP8.29□□□□□ -1.08
VPS54-204ENST00000416400 ZNF358Q9NW07 568 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 DACH1Q9UI36 760 aa8.29□□□□□ -1.08
VPS54-204ENST00000416400 SFI1A8K8P3 1242 aa8.28□□□□□ -1.08
VPS54-204ENST00000416400 TMEM229AB2RXF0 380 aa8.28□□□□□ -1.08
VPS54-204ENST00000416400 MAN1A2O60476 641 aa8.28□□□□□ -1.08
VPS54-204ENST00000416400 STAU1O95793 577 aaKnown RBP8.28□□□□□ -1.08
VPS54-204ENST00000416400 CTSOP43234 321 aaPredicted RBP8.28□□□□□ -1.08
VPS54-204ENST00000416400 CENPCQ03188 943 aa8.28□□□□□ -1.08
VPS54-204ENST00000416400 ZSCAN10Q96SZ4 725 aaPredicted RBP8.28□□□□□ -1.08
VPS54-204ENST00000416400 M0R2N6 131 aa8.27□□□□□ -1.09
VPS54-204ENST00000416400 RNF144AP50876 292 aaPredicted RBP8.27□□□□□ -1.09
VPS54-204ENST00000416400 SMTNP53814 917 aa8.27□□□□□ -1.09
VPS54-204ENST00000416400 GNASQ5JWF2 1037 aa8.27□□□□□ -1.09
VPS54-204ENST00000416400 NBPF15Q8N660 670 aa8.27□□□□□ -1.09
VPS54-204ENST00000416400 A6NJY4 79 aa8.26□□□□□ -1.09
VPS54-204ENST00000416400 FIGNL2A6NMB9 653 aa8.26□□□□□ -1.09
VPS54-204ENST00000416400 C11orf95C9JLR9 678 aaPredicted RBP8.26□□□□□ -1.09
VPS54-204ENST00000416400 SLC4A9Q96Q91 983 aa8.26□□□□□ -1.09
VPS54-204ENST00000416400 GMPR2Q9P2T1 348 aaKnown RBP8.26□□□□□ -1.09
VPS54-204ENST00000416400 CHMP3Q9Y3E7 222 aa8.26□□□□□ -1.09
VPS54-204ENST00000416400 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.25□□□□□ -1.095e-6■■■□□ 14.7
VPS54-204ENST00000416400 LYSMD3Q7Z3D4 306 aa8.25□□□□□ -1.09
VPS54-204ENST00000416400 PRICKLE2Q7Z3G6 844 aa8.25□□□□□ -1.09
VPS54-204ENST00000416400 SOS2Q07890 1332 aaPredicted RBP8.25□□□□□ -1.09
VPS54-204ENST00000416400 TNS4Q8IZW8 715 aa8.24□□□□□ -1.09
VPS54-204ENST00000416400 TSEN2Q8NCE0 465 aaKnown RBP8.24□□□□□ -1.09
VPS54-204ENST00000416400 TRIM47Q96LD4 638 aa8.24□□□□□ -1.09
VPS54-204ENST00000416400 CDK2AP1O14519 115 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 SWI5Q1ZZU3 235 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 FOXD4L5Q5VV16 416 aaPredicted RBP8.23□□□□□ -1.09
VPS54-204ENST00000416400 RNF217Q8TC41 542 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 STK32AQ8WU08 396 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 GRIP2Q9C0E4 1043 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 ZMIZ1Q9ULJ6 1067 aa8.23□□□□□ -1.09
VPS54-204ENST00000416400 CCDC9Q9Y3X0 531 aaKnown RBP8.23□□□□□ -1.09
VPS54-204ENST00000416400 PATL2C9JE40 543 aaKnown RBP8.22□□□□□ -1.09
VPS54-204ENST00000416400 DKK1O94907 266 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 TMEM164Q5U3C3 297 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 TAS1R3Q7RTX0 852 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 RHBDD1Q8TEB9 315 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 NIFKQ9BYG3 293 aaKnown RBP8.22□□□□□ -1.09
VPS54-204ENST00000416400 CABP1Q9NZU7 370 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 HRH3Q9Y5N1 445 aa8.22□□□□□ -1.09
VPS54-204ENST00000416400 BRD1O95696 1058 aa8.21□□□□□ -1.1
VPS54-204ENST00000416400 POU4F2Q12837 409 aa8.21□□□□□ -1.1
VPS54-204ENST00000416400 MTFR1Q15390 333 aa8.21□□□□□ -1.1
VPS54-204ENST00000416400 PPARGC1BQ86YN6 1023 aaKnown RBP8.21□□□□□ -1.1
VPS54-204ENST00000416400 SLC9A9Q8IVB4 645 aa8.21□□□□□ -1.1
VPS54-204ENST00000416400 FHDC1Q9C0D6 1143 aaPredicted RBP8.21□□□□□ -1.1
VPS54-204ENST00000416400 SCHIP1Q9P0W5 487 aaPredicted RBP8.21□□□□□ -1.1
VPS54-204ENST00000416400 ZNF787Q6DD87 383 aa8.2□□□□□ -1.1
VPS54-204ENST00000416400 GAS2L2Q8NHY3 880 aa8.2□□□□□ -1.1
VPS54-204ENST00000416400 VTI1AQ96AJ9 217 aa8.2□□□□□ -1.1
VPS54-204ENST00000416400 DNMT3LQ9UJW3 386 aa8.2□□□□□ -1.1
VPS54-204ENST00000416400 ZNF232Q9UNY5 417 aa8.2□□□□□ -1.1
VPS54-204ENST00000416400 CARNS1A5YM72 827 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 SPATA31C2B4DYI2 1134 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 PPP1R12BO60237 982 aaPredicted RBP8.19□□□□□ -1.1
VPS54-204ENST00000416400 RHOQP17081 205 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 PHKA2P46019 1235 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 KCNA1Q09470 495 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 WDR44Q5JSH3 913 aa8.19□□□□□ -1.1
VPS54-204ENST00000416400 CHMP7Q8WUX9 453 aaPredicted RBP8.19□□□□□ -1.1
VPS54-204ENST00000416400 SCG3Q8WXD2 468 aaKnown RBP8.19□□□□□ -1.1
VPS54-204ENST00000416400 TMEM88BA6NKF7 163 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 SOBPA7XYQ1 873 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 LCE2BO14633 110 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 LGR5O75473 907 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 SNRPBP14678 240 aaKnown RBP8.18□□□□□ -1.1
VPS54-204ENST00000416400 PSMA6P60900 246 aaKnown RBP8.18□□□□□ -1.1
VPS54-204ENST00000416400 TBCELQ5QJ74 424 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 B4GALNT3Q6L9W6 998 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 NBPF10Q6P3W6 841 aaKnown RBP8.18□□□□□ -1.1
VPS54-204ENST00000416400 AIDAQ96BJ3 306 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms