RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RUFY2Q8WXA3 655 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 SCLT1Q96NL6 688 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 KIF3AQ9Y496 699 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 SNRPA1P09661 255 aaKnown RBP8.77□□□□□ -1
SCN9A-202ENST00000409435 UTP14AQ9BVJ6 771 aaKnown RBP8.77□□□□□ -1
SCN9A-202ENST00000409435 NLRP1Q9C000 1473 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 SART3Q15020 963 aaKnown RBP8.77□□□□□ -1.01
SCN9A-202ENST00000409435 ATP7AQ04656 1500 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 RIMBP2O15034 1052 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 ERC2O15083 957 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 LDHCP07864 332 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 IFIT5Q13325 482 aaKnown RBP8.77□□□□□ -1.01
SCN9A-202ENST00000409435 ZSCAN25Q6NSZ9 544 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 ANKRD18AQ8IVF6 992 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 GZF1Q9H116 711 aaPredicted RBP8.77□□□□□ -1.01
SCN9A-202ENST00000409435 HLA-DOAP06340 250 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 LTKP29376 864 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 FAM13BQ9NYF5 915 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 ITSN2Q9NZM3 1697 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 CFAP43Q8NDM7 1665 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 SLC5A1P13866 664 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 TRIM29Q14134 588 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 TAF7Q15545 349 aaPredicted RBP8.77□□□□□ -1.01
SCN9A-202ENST00000409435 CCDC7Q96M83 1385 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 PPIP5K1Q6PFW1 1433 aa8.77□□□□□ -1.01
SCN9A-202ENST00000409435 RGS3P49796 1198 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 SULF1Q8IWU6 871 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 CNKSR1Q969H4 720 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 NFE2L2Q16236 605 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 LARP1Q6PKG0 1096 aaKnown RBP8.76□□□□□ -1.01
SCN9A-202ENST00000409435 ZNF804AQ7Z570 1209 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 ABCC5O15440 1437 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 PCF11O94913 1555 aaKnown RBP8.76□□□□□ -1.01
SCN9A-202ENST00000409435 KDM4FA0A1W2PPD8 638 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 FAM182BQ5T319 152 aa8.76□□□□□ -1.01
SCN9A-202ENST00000409435 RALYLQ86SE5 291 aaKnown RBP8.76□□□□□ -1.01
SCN9A-202ENST00000409435 ABCA5Q8WWZ7 1642 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 TPM3P06753 285 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 SPTY2D1Q68D10 685 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 NSFL1CQ9UNZ2 370 aaKnown RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 CSPP1Q1MSJ5 1256 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 B4GALNT3Q6L9W6 998 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 DNAJC2Q99543 621 aaKnown RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 MYD88Q99836 296 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 THRAP3Q9Y2W1 955 aaKnown RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 ERC1Q8IUD2 1116 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 F8W031 263 aaPredicted RBP8.75□□□□□ -1.01
SCN9A-202ENST00000409435 GNAI3P08754 354 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 PAF1Q8N7H5 531 aa8.75□□□□□ -1.01
SCN9A-202ENST00000409435 DPP8Q6V1X1 898 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-202ENST00000409435 PICK1Q9NRD5 415 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 PPIP5K2O43314 1243 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 PTPRMP28827 1452 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 E9PSI1 815 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 ZKSCAN2Q63HK3 967 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 SRCIN1Q9C0H9 1055 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 SPINK5Q9NQ38 1064 aaPredicted RBP8.74□□□□□ -1.01
SCN9A-202ENST00000409435 DCAF5Q96JK2 942 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 AKAP2Q9Y2D5 859 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 APAF1O14727 1248 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 GSTO1P78417 241 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 CCDC70Q6NSX1 233 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 NUTM1Q86Y26 1132 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 ABCA8O94911 1581 aa8.74□□□□□ -1.01
SCN9A-202ENST00000409435 MAGI3Q5TCQ9 1506 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 TAF3Q5VWG9 929 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 CPLX1O14810 134 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 TIAM1Q13009 1591 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 TMEM106CQ9BVX2 250 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 HYPKQ9NX55 129 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 PIM2Q9P1W9 311 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 CTTNBP2Q8WZ74 1663 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 B4DLN1 442 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 BAG3O95817 575 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 SLC4A2P04920 1241 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 MRPL12P52815 198 aaKnown RBP8.73□□□□□ -1.01
SCN9A-202ENST00000409435 BRINP3Q76B58 766 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 RNF181Q9P0P0 153 aa8.73□□□□□ -1.01
SCN9A-202ENST00000409435 PRKG1Q13976 671 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 IVNS1ABPQ9Y6Y0 642 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 H0YHG0 523 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 TNIP1Q15025 636 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 BRMS1Q9HCU9 246 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 CLASRPQ8N2M8 674 aaKnown RBP8.72□□□□□ -1.01
SCN9A-202ENST00000409435 CEP89Q96ST8 783 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 SIL1Q9H173 461 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 TMOD4Q9NZQ9 345 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 NINLQ9Y2I6 1382 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 KAT6BQ8WYB5 2073 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 RBM27Q9P2N5 1060 aaKnown RBP8.72□□□□□ -1.01
SCN9A-202ENST00000409435 CSADQ9Y600 493 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 PLEKHG1Q9ULL1 1385 aa8.72□□□□□ -1.01
SCN9A-202ENST00000409435 ZGPATQ8N5A5 531 aaKnown RBP8.71□□□□□ -1.01
SCN9A-202ENST00000409435 IPO9Q96P70 1041 aaKnown RBP8.71□□□□□ -1.01
SCN9A-202ENST00000409435 ACBD3Q9H3P7 528 aa8.71□□□□□ -1.01
SCN9A-202ENST00000409435 CWC25Q9NXE8 425 aaPredicted RBP8.71□□□□□ -1.01
SCN9A-202ENST00000409435 PTPN23Q9H3S7 1636 aa8.71□□□□□ -1.01
SCN9A-202ENST00000409435 ZNF76P36508 570 aa8.71□□□□□ -1.02
SCN9A-202ENST00000409435 CDR1P51861 262 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms