RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ANP32AP39687 249 aaKnown RBP23.9■■□□□ 1.42
USP39-202ENST00000409025 AEBP2Q6ZN18 517 aaPredicted RBP23.9■■□□□ 1.42
USP39-202ENST00000409025 CHMP4AQ9BY43 222 aa23.9■■□□□ 1.42
USP39-202ENST00000409025 HOXB7P09629 217 aa23.89■■□□□ 1.42
USP39-202ENST00000409025 C1orf115Q9H7X2 142 aa23.89■■□□□ 1.42
USP39-202ENST00000409025 ADAMTS7Q9UKP4 1686 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 MEGF6O75095 1541 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 C8orf34Q49A92 452 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 HDGFL1Q5TGJ6 251 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 NECTIN2Q92692 538 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 ABCA3Q99758 1704 aa23.88■■□□□ 1.41
USP39-202ENST00000409025 FLIIQ13045 1269 aa23.86■■□□□ 1.41
USP39-202ENST00000409025 CCT4P50991 539 aaKnown RBP23.86■■□□□ 1.41
USP39-202ENST00000409025 SIPA1L3O60292 1781 aaPredicted RBP23.85■■□□□ 1.41
USP39-202ENST00000409025 KCNQ3O43525 872 aa23.84■■□□□ 1.41
USP39-202ENST00000409025 PHKG2P15735 406 aa23.84■■□□□ 1.41
USP39-202ENST00000409025 FKBP5Q13451 457 aaPredicted RBP23.84■■□□□ 1.41
USP39-202ENST00000409025 IFNL2Q8IZJ0 200 aa23.84■■□□□ 1.41
USP39-202ENST00000409025 GCC1Q96CN9 775 aa23.84■■□□□ 1.41
USP39-202ENST00000409025 WDR17Q8IZU2 1322 aa23.84■■□□□ 1.41
USP39-202ENST00000409025 SLC4A10Q6U841 1118 aa23.83■■□□□ 1.41
USP39-202ENST00000409025 SCN11AQ9UI33 1791 aa23.83■■□□□ 1.4
USP39-202ENST00000409025 F6X3S4 739 aa23.82■■□□□ 1.4
USP39-202ENST00000409025 PKD1L3Q7Z443 1732 aa23.82■■□□□ 1.4
USP39-202ENST00000409025 EIF2S2P20042 333 aaKnown RBP23.82■■□□□ 1.4
USP39-202ENST00000409025 NUCB1Q02818 461 aa23.81■■□□□ 1.4
USP39-202ENST00000409025 NPM2Q86SE8 214 aaKnown RBP23.81■■□□□ 1.4
USP39-202ENST00000409025 SIRT2Q8IXJ6 389 aa23.81■■□□□ 1.4
USP39-202ENST00000409025 COL5A2P05997 1499 aaPredicted RBP23.81■■□□□ 1.4
USP39-202ENST00000409025 TOM1L2Q6ZVM7 507 aa23.8■■□□□ 1.4
USP39-202ENST00000409025 KDM6AO15550 1401 aaPredicted RBP23.8■■□□□ 1.4
USP39-202ENST00000409025 RPAP2Q8IXW5 612 aaPredicted RBP23.79■■□□□ 1.4
USP39-202ENST00000409025 HSP90AB1P08238 724 aaKnown RBP23.78■■□□□ 1.4
USP39-202ENST00000409025 MEIS3Q99687 375 aa23.78■■□□□ 1.4
USP39-202ENST00000409025 SLC52A2Q9HAB3 445 aa23.78■■□□□ 1.4
USP39-202ENST00000409025 DCAF5Q96JK2 942 aa23.78■■□□□ 1.4
USP39-202ENST00000409025 PARP4Q9UKK3 1724 aaKnown RBP23.78■■□□□ 1.4
USP39-202ENST00000409025 HEG1Q9ULI3 1381 aa23.77■■□□□ 1.4
USP39-202ENST00000409025 PXDNLA1KZ92 1463 aa23.77■■□□□ 1.4
USP39-202ENST00000409025 MSH5O43196 834 aa23.77■■□□□ 1.4
USP39-202ENST00000409025 CHD1LQ86WJ1 897 aa23.77■■□□□ 1.4
USP39-202ENST00000409025 ANKRD44Q8N8A2 993 aa23.77■■□□□ 1.4
USP39-202ENST00000409025 CYP27B1O15528 508 aa23.76■■□□□ 1.39
USP39-202ENST00000409025 GIGYF1O75420 1035 aaPredicted RBP23.76■■□□□ 1.39
USP39-202ENST00000409025 IPO9Q96P70 1041 aaKnown RBP23.76■■□□□ 1.39
USP39-202ENST00000409025 PHAXQ9H814 394 aaKnown RBP23.76■■□□□ 1.39
USP39-202ENST00000409025 ATP10DQ9P241 1426 aa23.76■■□□□ 1.39
USP39-202ENST00000409025 CHPF2Q9P2E5 772 aa23.76■■□□□ 1.39
USP39-202ENST00000409025 ROBO1Q9Y6N7 1651 aa23.76■■□□□ 1.39
USP39-202ENST00000409025 N4BP2Q86UW6 1770 aaPredicted RBP23.75■■□□□ 1.39
USP39-202ENST00000409025 ANKRD45Q5TZF3 282 aa23.75■■□□□ 1.39
USP39-202ENST00000409025 EVA1CP58658 441 aa23.74■■□□□ 1.39
USP39-202ENST00000409025 CEP85Q6P2H3 762 aa23.74■■□□□ 1.39
USP39-202ENST00000409025 CARD10Q9BWT7 1032 aa23.74■■□□□ 1.39
USP39-202ENST00000409025 LNPKQ9C0E8 428 aa23.74■■□□□ 1.39
USP39-202ENST00000409025 LTBP4Q8N2S1 1624 aa23.74■■□□□ 1.39
USP39-202ENST00000409025 DBF4Q9UBU7 674 aaPredicted RBP23.74■■□□□ 1.39
USP39-202ENST00000409025 ZNF790Q6PG37 636 aa23.73■■□□□ 1.39
USP39-202ENST00000409025 NFATC2IPQ8NCF5 419 aa23.73■■□□□ 1.39
USP39-202ENST00000409025 MRC1P22897 1456 aa23.73■■□□□ 1.39
USP39-202ENST00000409025 DCTPP1Q9H773 170 aa23.72■■□□□ 1.39
USP39-202ENST00000409025 STRN4Q9NRL3 753 aa23.72■■□□□ 1.39
USP39-202ENST00000409025 GNAI3P08754 354 aa23.72■■□□□ 1.39
USP39-202ENST00000409025 ZCRB1Q8TBF4 217 aaKnown RBP23.72■■□□□ 1.39
USP39-202ENST00000409025 AHDC1Q5TGY3 1603 aaPredicted RBP23.72■■□□□ 1.39
USP39-202ENST00000409025 PCDH11XQ9BZA7 1347 aa23.71■■□□□ 1.39
USP39-202ENST00000409025 PCDH11YQ9BZA8 1340 aa23.71■■□□□ 1.39
USP39-202ENST00000409025 GNAI2P04899 355 aa23.71■■□□□ 1.39
USP39-202ENST00000409025 IL2RBP14784 551 aa23.71■■□□□ 1.39
USP39-202ENST00000409025 SLC39A6Q13433 755 aa23.7■■□□□ 1.38
USP39-202ENST00000409025 HMMRO75330 724 aa23.69■■□□□ 1.38
USP39-202ENST00000409025 LARP1Q6PKG0 1096 aaKnown RBP23.69■■□□□ 1.38
USP39-202ENST00000409025 CABP4P57796 275 aa23.69■■□□□ 1.38
USP39-202ENST00000409025 TTC5Q8N0Z6 440 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 PRAMEF22A3QJZ6 481 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 ANXA1P04083 346 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 DNAAF4Q8WXU2 420 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 SRCIN1Q9C0H9 1055 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 HYPKQ9NX55 129 aa23.67■■□□□ 1.38
USP39-202ENST00000409025 ZBTB47Q9UFB7 747 aaPredicted RBP23.67■■□□□ 1.38
USP39-202ENST00000409025 COL22A1Q8NFW1 1626 aaPredicted RBP23.66■■□□□ 1.38
USP39-202ENST00000409025 PI4KAP2A4QPH2 592 aa23.65■■□□□ 1.38
USP39-202ENST00000409025 ERICH6Q7L0X2 663 aa23.65■■□□□ 1.38
USP39-202ENST00000409025 PI4KAP1Q8N8J0 262 aa23.65■■□□□ 1.38
USP39-202ENST00000409025 COL14A1Q05707 1796 aaKnown RBP23.65■■□□□ 1.38
USP39-202ENST00000409025 DDRGK1Q96HY6 314 aa23.65■■□□□ 1.38
USP39-202ENST00000409025 USP44Q9H0E7 712 aa23.64■■□□□ 1.37
USP39-202ENST00000409025 DDX21Q9NR30 783 aaKnown RBP eCLIP23.64■■□□□ 1.37
USP39-202ENST00000409025 BTG4Q9NY30 223 aa23.64■■□□□ 1.37
USP39-202ENST00000409025 NOP58Q9Y2X3 529 aaKnown RBP23.64■■□□□ 1.37
USP39-202ENST00000409025 C5P01031 1676 aa23.64■■□□□ 1.37
USP39-202ENST00000409025 ZNF496Q96IT1 587 aaPredicted RBP23.63■■□□□ 1.37
USP39-202ENST00000409025 ADCY9O60503 1353 aa23.63■■□□□ 1.37
USP39-202ENST00000409025 UBTFL1P0CB47 393 aaPredicted RBP23.63■■□□□ 1.37
USP39-202ENST00000409025 PROSER3Q2NL68 480 aa23.63■■□□□ 1.37
USP39-202ENST00000409025 FMNL2Q96PY5 1086 aa23.63■■□□□ 1.37
USP39-202ENST00000409025 SNRPA1P09661 255 aaKnown RBP23.62■■□□□ 1.37
USP39-202ENST00000409025 NKX1-1Q15270 411 aaPredicted RBP23.62■■□□□ 1.37
USP39-202ENST00000409025 BEND3Q5T5X7 828 aa23.62■■□□□ 1.37
USP39-202ENST00000409025 ERVV-2B6SEH9 535 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms