RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 PTPREP23469 700 aa13.12□□□□□ -0.31
PRAMEF1-202ENST00000400814 ABL2P42684 1182 aa13.12□□□□□ -0.31
PRAMEF1-202ENST00000400814 RTL5Q5HYW3 569 aaPredicted RBP13.12□□□□□ -0.31
PRAMEF1-202ENST00000400814 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.12□□□□□ -0.31
PRAMEF1-202ENST00000400814 ATAD2Q6PL18 1390 aa13.11□□□□□ -0.31
PRAMEF1-202ENST00000400814 TRIM6-TRIM34B2RNG4 842 aa13.11□□□□□ -0.31
PRAMEF1-202ENST00000400814 NPM2Q86SE8 214 aaKnown RBP13.11□□□□□ -0.31
PRAMEF1-202ENST00000400814 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
PRAMEF1-202ENST00000400814 NINLQ9Y2I6 1382 aa13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 STRCQ7RTU9 1775 aa13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 SRPK2P78362 688 aaKnown RBP13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 PACS2Q86VP3 889 aa13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 ZNF710Q8N1W2 664 aa13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 PRKRIP1Q9H875 184 aaPredicted RBP13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 CCDC9Q9Y3X0 531 aaKnown RBP13.1□□□□□ -0.31
PRAMEF1-202ENST00000400814 ADGRB2O60241 1585 aa13.09□□□□□ -0.31
PRAMEF1-202ENST00000400814 CCER2I3L3R5 266 aa13.09□□□□□ -0.31
PRAMEF1-202ENST00000400814 CALR3Q96L12 384 aaKnown RBP13.09□□□□□ -0.31
PRAMEF1-202ENST00000400814 NWD1Q149M9 1564 aa13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 NUTM2BA6NNL0 878 aaPredicted RBP13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 NUTM2EB1AL46 878 aaPredicted RBP13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 PRPF38BQ5VTL8 546 aaKnown RBP13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 NUTM2AQ8IVF1 878 aaPredicted RBP13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 KCTD17Q8N5Z5 321 aa13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 CARD14Q9BXL6 1004 aa13.08□□□□□ -0.32
PRAMEF1-202ENST00000400814 POM121CA8CG34 1229 aa13.07□□□□□ -0.32
PRAMEF1-202ENST00000400814 RDH13Q8NBN7 331 aa13.07□□□□□ -0.32
PRAMEF1-202ENST00000400814 RETREG2Q8NC44 543 aa13.07□□□□□ -0.32
PRAMEF1-202ENST00000400814 TMC1Q8TDI8 760 aa13.07□□□□□ -0.32
PRAMEF1-202ENST00000400814 CABLES1Q8TDN4 633 aa13.07□□□□□ -0.32
PRAMEF1-202ENST00000400814 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 NPC1L1Q9UHC9 1359 aa13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 KDM4AO75164 1064 aa13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 USP17L8P0C7I0 530 aa13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 NUDT16Q96DE0 195 aaKnown RBP13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 KNSTRNQ9Y448 316 aa13.06□□□□□ -0.32
PRAMEF1-202ENST00000400814 ANKRD36BQ8N2N9 1353 aa13.05□□□□□ -0.32
PRAMEF1-202ENST00000400814 POTEJP0CG39 1038 aa13.05□□□□□ -0.32
PRAMEF1-202ENST00000400814 RALBP1Q15311 655 aa13.05□□□□□ -0.32
PRAMEF1-202ENST00000400814 CABP1Q9NZU7 370 aa13.05□□□□□ -0.32
PRAMEF1-202ENST00000400814 SMAPO00193 183 aa13.04□□□□□ -0.32
PRAMEF1-202ENST00000400814 GLMNQ92990 594 aa13.04□□□□□ -0.32
PRAMEF1-202ENST00000400814 PRR36Q9H6K5 1346 aa13.04□□□□□ -0.32
PRAMEF1-202ENST00000400814 NKTRP30414 1462 aaKnown RBP13.03□□□□□ -0.32
PRAMEF1-202ENST00000400814 CD163L1Q9NR16 1453 aa13.03□□□□□ -0.32
PRAMEF1-202ENST00000400814 ZBTB3Q9H5J0 574 aa13.03□□□□□ -0.32
PRAMEF1-202ENST00000400814 TERF2IPQ9NYB0 399 aa13.03□□□□□ -0.32
PRAMEF1-202ENST00000400814 PARD3Q8TEW0 1356 aa13.03□□□□□ -0.32
PRAMEF1-202ENST00000400814 USP46P62068 366 aa13.02□□□□□ -0.33
PRAMEF1-202ENST00000400814 AEBP1Q8IUX7 1158 aa13.02□□□□□ -0.33
PRAMEF1-202ENST00000400814 NCOA3Q9Y6Q9 1424 aa13.02□□□□□ -0.33
PRAMEF1-202ENST00000400814 ATP7BP35670 1465 aa13.02□□□□□ -0.33
PRAMEF1-202ENST00000400814 GCGRP47871 477 aa13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 GJD4Q96KN9 370 aaPredicted RBP13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 A0A1W2PP64 1363 aa13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 CPSF1Q10570 1443 aaKnown RBP13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 ADGRL3Q9HAR2 1447 aa13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 STRCP1A6NGW2 1772 aa13.01□□□□□ -0.33
PRAMEF1-202ENST00000400814 PPIP5K1Q6PFW1 1433 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 ANKARQ7Z5J8 1434 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 NSD3Q9BZ95 1437 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 HOXA2O43364 376 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 FDX1P10109 184 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 PROX2Q3B8N5 592 aa13□□□□□ -0.33
PRAMEF1-202ENST00000400814 HDGFL2Q7Z4V5 671 aaPredicted RBP13□□□□□ -0.33
PRAMEF1-202ENST00000400814 USP32Q8NFA0 1604 aa12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 CDC42BPGQ6DT37 1551 aa12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 CC2D1BQ5T0F9 858 aaKnown RBP12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 NDUFB9Q9Y6M9 179 aa12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 NALCNQ8IZF0 1738 aa12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 FMN2Q9NZ56 1722 aa12.99□□□□□ -0.33
PRAMEF1-202ENST00000400814 MYBBP1AQ9BQG0 1328 aaKnown RBP12.98□□□□□ -0.33
PRAMEF1-202ENST00000400814 C19orf44Q9H6X5 657 aa12.98□□□□□ -0.33
PRAMEF1-202ENST00000400814 TOPAZ1Q8N9V7 1692 aa12.98□□□□□ -0.33
PRAMEF1-202ENST00000400814 CGNL1Q0VF96 1302 aa12.97□□□□□ -0.33
PRAMEF1-202ENST00000400814 IRF5Q13568 498 aa12.97□□□□□ -0.33
PRAMEF1-202ENST00000400814 CCDC184Q52MB2 194 aa12.97□□□□□ -0.33
PRAMEF1-202ENST00000400814 PCDHGC3Q9UN70 934 aa12.96□□□□□ -0.33
PRAMEF1-202ENST00000400814 NSD2O96028 1365 aa12.96□□□□□ -0.34
PRAMEF1-202ENST00000400814 TMEM94Q12767 1356 aa12.96□□□□□ -0.34
PRAMEF1-202ENST00000400814 FYB1O15117 783 aa12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 CNGB1Q14028 1251 aaPredicted RBP12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 POLR3AO14802 1390 aaPredicted RBP12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 BRD4O60885 1362 aaPredicted RBP12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 RGPD8O14715 1765 aaPredicted RBP12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 AKAP12Q02952 1782 aa12.95□□□□□ -0.34
PRAMEF1-202ENST00000400814 ACEP12821 1306 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 ZNF335Q9H4Z2 1342 aaPredicted RBP12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 ITSN1Q15811 1721 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 CTDSPL2Q05D32 466 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 WASHC4Q2M389 1173 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 HDGFL1Q5TGJ6 251 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 NLRP13Q86W25 1043 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 KIAA1468Q9P260 1216 aa12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 EDC4Q6P2E9 1401 aaKnown RBP12.94□□□□□ -0.34
PRAMEF1-202ENST00000400814 SLC10A3P09131 477 aa12.93□□□□□ -0.34
PRAMEF1-202ENST00000400814 PPP2R1AP30153 589 aa12.93□□□□□ -0.34
PRAMEF1-202ENST00000400814 GUCA2AQ02747 115 aa12.93□□□□□ -0.34
PRAMEF1-202ENST00000400814 SP7Q8TDD2 431 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms