RNA–Protein interactions for RNA: ENST00000398743.6

PRAME-202, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PRAME, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-202ENST00000398743 SLIT3O75094 1523 aa17.13■□□□□ 0.33
PRAME-202ENST00000398743 CASC1Q6TDU7 716 aa17.12■□□□□ 0.33
PRAME-202ENST00000398743 HSP90AB1P08238 724 aaKnown RBP17.12■□□□□ 0.33
PRAME-202ENST00000398743 SDSP20132 328 aa17.12■□□□□ 0.33
PRAME-202ENST00000398743 AKAP4Q5JQC9 854 aa17.12■□□□□ 0.33
PRAME-202ENST00000398743 ARHGEF25Q86VW2 580 aa17.12■□□□□ 0.33
PRAME-202ENST00000398743 LRRC59Q96AG4 307 aaKnown RBP17.12■□□□□ 0.33
PRAME-202ENST00000398743 HOXB7P09629 217 aa17.11■□□□□ 0.33
PRAME-202ENST00000398743 XPCQ01831 940 aaPredicted RBP17.11■□□□□ 0.33
PRAME-202ENST00000398743 PLEKHO1Q53GL0 409 aaPredicted RBP17.11■□□□□ 0.33
PRAME-202ENST00000398743 CHMP4AQ9BY43 222 aa17.11■□□□□ 0.33
PRAME-202ENST00000398743 LGR6Q9HBX8 967 aa17.11■□□□□ 0.33
PRAME-202ENST00000398743 EIF4A1P60842 406 aaKnown RBP17.11■□□□□ 0.33
PRAME-202ENST00000398743 AMOTQ4VCS5 1084 aa17.11■□□□□ 0.33
PRAME-202ENST00000398743 ZNF530Q6P9A1 599 aaPredicted RBP17.11■□□□□ 0.33
PRAME-202ENST00000398743 OSBPL3Q9H4L5 887 aa17.11■□□□□ 0.33
PRAME-202ENST00000398743 TEFQ10587 303 aa17.1■□□□□ 0.33
PRAME-202ENST00000398743 N4BP2Q86UW6 1770 aaPredicted RBP17.1■□□□□ 0.33
PRAME-202ENST00000398743 CACNA1FO60840 1977 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 ATP8B2P98198 1209 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 LMOD2Q6P5Q4 547 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 EXOC6BQ9Y2D4 811 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 NCAPD2Q15021 1401 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 LMO7Q8WWI1 1683 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 DDIT3P35638 169 aa17.09■□□□□ 0.33
PRAME-202ENST00000398743 PHAXQ9H814 394 aaKnown RBP17.09■□□□□ 0.33
PRAME-202ENST00000398743 K7ELQ4 463 aaPredicted RBP17.08■□□□□ 0.33
PRAME-202ENST00000398743 MCM4P33991 863 aa17.08■□□□□ 0.33
PRAME-202ENST00000398743 PDE1AP54750 535 aa17.08■□□□□ 0.33
PRAME-202ENST00000398743 PROSER2Q86WR7 435 aaPredicted RBP17.08■□□□□ 0.33
PRAME-202ENST00000398743 LRRCC1Q9C099 1032 aa17.08■□□□□ 0.33
PRAME-202ENST00000398743 PNMA6EA0A0J9YXQ4 647 aa17.08■□□□□ 0.32
PRAME-202ENST00000398743 BTBD11A6QL63 1104 aa17.08■□□□□ 0.32
PRAME-202ENST00000398743 EIF2S2P20042 333 aaKnown RBP17.08■□□□□ 0.32
PRAME-202ENST00000398743 ANKRD24Q8TF21 1146 aa17.08■□□□□ 0.32
PRAME-202ENST00000398743 LRRFIP2Q9Y608 721 aaKnown RBP17.08■□□□□ 0.32
PRAME-202ENST00000398743 KDM3BQ7LBC6 1761 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 RGPD2P0DJD1 1756 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 PLEKHG5O94827 1062 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 UBTFL1P0CB47 393 aaPredicted RBP17.07■□□□□ 0.32
PRAME-202ENST00000398743 C1orf141Q5JVX7 400 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 KRT28Q7Z3Y7 464 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 USP26Q9BXU7 913 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 USP44Q9H0E7 712 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 CIZ1Q9ULV3 898 aaPredicted RBP17.07■□□□□ 0.32
PRAME-202ENST00000398743 C1orf167Q5SNV9 1468 aa17.07■□□□□ 0.32
PRAME-202ENST00000398743 CD2BP2O95400 341 aaKnown RBP17.06■□□□□ 0.32
PRAME-202ENST00000398743 MPRIPQ6WCQ1 1025 aa17.06■□□□□ 0.32
PRAME-202ENST00000398743 RBM42Q9BTD8 480 aaKnown RBP17.06■□□□□ 0.32
PRAME-202ENST00000398743 KIF1AQ12756 1690 aa17.06■□□□□ 0.32
PRAME-202ENST00000398743 IBTKQ9P2D0 1353 aaPredicted RBP17.06■□□□□ 0.32
PRAME-202ENST00000398743 TRPM3Q9HCF6 1732 aaPredicted RBP17.06■□□□□ 0.32
PRAME-202ENST00000398743 HSP90AA1P07900 732 aaKnown RBP17.06■□□□□ 0.32
PRAME-202ENST00000398743 RABEP1Q15276 862 aa17.06■□□□□ 0.32
PRAME-202ENST00000398743 OVOS2A0A0G2JMS6 1433 aa17.06■□□□□ 0.32
PRAME-202ENST00000398743 SRCIN1Q9C0H9 1055 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 C19orf44Q9H6X5 657 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 CHPF2Q9P2E5 772 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 SALL3Q9BXA9 1300 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 PXDNQ92626 1479 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 REC8O95072 547 aa17.05■□□□□ 0.32
PRAME-202ENST00000398743 RNMTO43148 476 aaKnown RBP17.04■□□□□ 0.32
PRAME-202ENST00000398743 KCNQ3O43525 872 aa17.04■□□□□ 0.32
PRAME-202ENST00000398743 CAMTA1Q9Y6Y1 1673 aa17.04■□□□□ 0.32
PRAME-202ENST00000398743 MX1P20591 662 aa17.04■□□□□ 0.32
PRAME-202ENST00000398743 MST1RQ04912 1400 aa17.03■□□□□ 0.32
PRAME-202ENST00000398743 ERC2O15083 957 aa17.03■□□□□ 0.32
PRAME-202ENST00000398743 AXIN2Q9Y2T1 843 aa17.03■□□□□ 0.32
PRAME-202ENST00000398743 DNAAF4Q8WXU2 420 aa17.02■□□□□ 0.32
PRAME-202ENST00000398743 DDX11L8A8MPP1 907 aa17.02■□□□□ 0.31
PRAME-202ENST00000398743 SSH3Q8TE77 659 aa17.02■□□□□ 0.31
PRAME-202ENST00000398743 PI4KAP2A4QPH2 592 aa17.01■□□□□ 0.31
PRAME-202ENST00000398743 BEND3Q5T5X7 828 aa17.01■□□□□ 0.31
PRAME-202ENST00000398743 PI4KAP1Q8N8J0 262 aa17.01■□□□□ 0.31
PRAME-202ENST00000398743 DBF4Q9UBU7 674 aaPredicted RBP17.01■□□□□ 0.31
PRAME-202ENST00000398743 ERBB3P21860 1342 aa17■□□□□ 0.31
PRAME-202ENST00000398743 LMTK3Q96Q04 1460 aa17■□□□□ 0.31
PRAME-202ENST00000398743 RAB3GAP1Q15042 981 aa17■□□□□ 0.31
PRAME-202ENST00000398743 TSHZ3Q63HK5 1081 aa17■□□□□ 0.31
PRAME-202ENST00000398743 PPP1R42Q7Z4L9 355 aa16.99■□□□□ 0.31
PRAME-202ENST00000398743 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
PRAME-202ENST00000398743 STAP2Q9UGK3 403 aa16.99■□□□□ 0.31
PRAME-202ENST00000398743 RAB11FIP3O75154 756 aa16.99■□□□□ 0.31
PRAME-202ENST00000398743 POLA2Q14181 598 aa16.99■□□□□ 0.31
PRAME-202ENST00000398743 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
PRAME-202ENST00000398743 ALS2Q96Q42 1657 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 GIGYF1O75420 1035 aaPredicted RBP16.98■□□□□ 0.31
PRAME-202ENST00000398743 NBPF7P0C2Y1 421 aaPredicted RBP16.98■□□□□ 0.31
PRAME-202ENST00000398743 ATF3P18847 181 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 GBP4Q96PP9 640 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 ADCY9O60503 1353 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 AOX1Q06278 1338 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 ANXA1P04083 346 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 ZC3H6P61129 1189 aaKnown RBP16.98■□□□□ 0.31
PRAME-202ENST00000398743 HEG1Q9ULI3 1381 aa16.98■□□□□ 0.31
PRAME-202ENST00000398743 SRGAP3O43295 1099 aa16.97■□□□□ 0.31
PRAME-202ENST00000398743 ST18O60284 1047 aa16.97■□□□□ 0.31
PRAME-202ENST00000398743 TRAK2O60296 914 aa16.97■□□□□ 0.31
PRAME-202ENST00000398743 SURF6O75683 361 aaKnown RBP16.97■□□□□ 0.31
PRAME-202ENST00000398743 TRIM6-TRIM34B2RNG4 842 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms