RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 TMCO3Q6UWJ1 677 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 NOL7Q9UMY1 257 aaKnown RBP13.03□□□□□ -0.32
HPS4-202ENST00000398145 ATP2B1P20020 1258 aa13.02□□□□□ -0.32
HPS4-202ENST00000398145 ZNF165P49910 485 aa13.02□□□□□ -0.32
HPS4-202ENST00000398145 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.32
HPS4-202ENST00000398145 TTC12Q9H892 705 aaPredicted RBP13.02□□□□□ -0.32
HPS4-202ENST00000398145 LRRFIP2Q9Y608 721 aaKnown RBP13.02□□□□□ -0.32
HPS4-202ENST00000398145 SPDYE4A6NLX3 237 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 GIMAP6Q6P9H5 292 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 NME9Q86XW9 330 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 DDX54Q8TDD1 881 aaKnown RBP13.02□□□□□ -0.33
HPS4-202ENST00000398145 SMARCE1Q969G3 411 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 SMTNL1A8MU46 457 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 PDE1AP54750 535 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 DMRT2Q9Y5R5 561 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 ZSCAN22P10073 491 aaPredicted RBP13.02□□□□□ -0.33
HPS4-202ENST00000398145 TSHZ3Q63HK5 1081 aa13.02□□□□□ -0.33
HPS4-202ENST00000398145 XBP1P17861 261 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 ZGPATQ8N5A5 531 aaKnown RBP13.01□□□□□ -0.33
HPS4-202ENST00000398145 MRPL50Q8N5N7 158 aaKnown RBP13.01□□□□□ -0.33
HPS4-202ENST00000398145 DCTPP1Q9H773 170 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 ERLIN1O75477 346 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 CLSTN1O94985 981 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 GJB2P29033 226 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 USP48Q86UV5 1035 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 MEIS3Q99687 375 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 UNC13AQ9UPW8 1703 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 CTAGE5O15320 804 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 CAVIN2O95810 425 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 TFIP11Q9UBB9 837 aaKnown RBP13.01□□□□□ -0.33
HPS4-202ENST00000398145 SPG7Q9UQ90 795 aa13.01□□□□□ -0.33
HPS4-202ENST00000398145 CTTNBP2Q8WZ74 1663 aa13□□□□□ -0.33
HPS4-202ENST00000398145 GNAT3A8MTJ3 354 aa13□□□□□ -0.33
HPS4-202ENST00000398145 EIF3JO75822 258 aaKnown RBP13□□□□□ -0.33
HPS4-202ENST00000398145 C16orf71Q8IYS4 520 aaPredicted RBP13□□□□□ -0.33
HPS4-202ENST00000398145 FYB1O15117 783 aa13□□□□□ -0.33
HPS4-202ENST00000398145 FLIIQ13045 1269 aa13□□□□□ -0.33
HPS4-202ENST00000398145 WAPLQ7Z5K2 1190 aa13□□□□□ -0.33
HPS4-202ENST00000398145 CAGE1Q8TC20 777 aa13□□□□□ -0.33
HPS4-202ENST00000398145 ESYT1Q9BSJ8 1104 aa13□□□□□ -0.33
HPS4-202ENST00000398145 FAM83GA6ND36 823 aa13□□□□□ -0.33
HPS4-202ENST00000398145 PPFIBP1Q86W92 1011 aa13□□□□□ -0.33
HPS4-202ENST00000398145 KDM4AO75164 1064 aa13□□□□□ -0.33
HPS4-202ENST00000398145 GTF2E1P29083 439 aaPredicted RBP13□□□□□ -0.33
HPS4-202ENST00000398145 BRPF1P55201 1214 aaPredicted RBP13□□□□□ -0.33
HPS4-202ENST00000398145 CFAP100Q494V2 611 aa13□□□□□ -0.33
HPS4-202ENST00000398145 ZNF530Q6P9A1 599 aaPredicted RBP13□□□□□ -0.33
HPS4-202ENST00000398145 PLEKHM2Q8IWE5 1019 aa13□□□□□ -0.33
HPS4-202ENST00000398145 RBSNQ9H1K0 784 aa13□□□□□ -0.33
HPS4-202ENST00000398145 PAXBP1Q9Y5B6 917 aa13□□□□□ -0.33
HPS4-202ENST00000398145 SART3Q15020 963 aaKnown RBP12.99□□□□□ -0.33
HPS4-202ENST00000398145 TRMT1Q9NXH9 659 aaKnown RBP12.99□□□□□ -0.33
HPS4-202ENST00000398145 DACH1Q9UI36 760 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 VAMP4O75379 141 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 ZNF445P59923 1031 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 RAPGEF6Q8TEU7 1601 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 EIF2AK4Q9P2K8 1649 aaKnown RBP12.99□□□□□ -0.33
HPS4-202ENST00000398145 TERF1P54274 439 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 USP26Q9BXU7 913 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 NLRP2Q9NX02 1062 aa12.99□□□□□ -0.33
HPS4-202ENST00000398145 H0YHG0 523 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 CEP89Q96ST8 783 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 BRMS1Q9HCU9 246 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 CALCOCO1Q9P1Z2 691 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 FAM200AQ8TCP9 573 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 CNPY2Q9Y2B0 182 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 RAPGEF3O95398 923 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 CCDC94Q9BW85 323 aaPredicted RBP12.98□□□□□ -0.33
HPS4-202ENST00000398145 PIP4K2AP48426 406 aaPredicted RBP12.98□□□□□ -0.33
HPS4-202ENST00000398145 GSDMDP57764 484 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 C8orf58Q8NAV2 365 aa12.98□□□□□ -0.33
HPS4-202ENST00000398145 INTS4Q96HW7 963 aaKnown RBP12.98□□□□□ -0.33
HPS4-202ENST00000398145 URI1O94763 535 aaPredicted RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 NAP1L1P55209 391 aaKnown RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 TAF7Q15545 349 aaPredicted RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 AXDND1Q5T1B0 1012 aaPredicted RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 OSCARQ8IYS5 282 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 DNMT1P26358 1616 aaKnown RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 BOLA2Q9H3K6 86 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 ECHDC1Q9NTX5 307 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 TBC1D2BQ9UPU7 963 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 ZBTB7BO15156 539 aaPredicted RBP12.97□□□□□ -0.33
HPS4-202ENST00000398145 IDI1Q13907 227 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 CCDC186Q7Z3E2 898 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 CTNNA3Q9UI47 895 aa12.97□□□□□ -0.33
HPS4-202ENST00000398145 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.97□□□□□ -0.33
HPS4-202ENST00000398145 ZSCAN12O43309 604 aa12.96□□□□□ -0.33
HPS4-202ENST00000398145 CCDC158Q5M9N0 1113 aa12.96□□□□□ -0.33
HPS4-202ENST00000398145 CDR1P51861 262 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 ATP10BO94823 1461 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 ZMYM3Q14202 1370 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 CEP135Q66GS9 1140 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 TSPYL6Q8N831 410 aa12.96□□□□□ -0.34
HPS4-202ENST00000398145 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
HPS4-202ENST00000398145 WDR62O43379 1518 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 BTBD11A6QL63 1104 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 FBLN1P23142 703 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 TRIM22Q8IYM9 498 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms