RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 CTCFP49711 727 aaPredicted RBP13.38□□□□□ -0.27
NEDD9-203ENST00000397378 MLLT1Q03111 559 aaPredicted RBP13.38□□□□□ -0.27
NEDD9-203ENST00000397378 DALRD3Q5D0E6 543 aaKnown RBP13.38□□□□□ -0.27
NEDD9-203ENST00000397378 USHBP1Q8N6Y0 703 aa13.38□□□□□ -0.27
NEDD9-203ENST00000397378 DCAF5Q96JK2 942 aa13.38□□□□□ -0.27
NEDD9-203ENST00000397378 MAP2P11137 1827 aaKnown RBP13.38□□□□□ -0.27
NEDD9-203ENST00000397378 LOC102724428A0A0B4J2F2 783 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 TATP17735 454 aaPredicted RBP13.37□□□□□ -0.27
NEDD9-203ENST00000397378 KCNA3P22001 575 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 SIK1P57059 783 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 TMF1P82094 1093 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 NLGN1Q8N2Q7 840 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 ABHD8Q96I13 439 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 SLC12A5Q9H2X9 1139 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 TERF2IPQ9NYB0 399 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 PARP3Q9Y6F1 533 aa13.37□□□□□ -0.27
NEDD9-203ENST00000397378 A0A1W2PP64 1363 aa13.36□□□□□ -0.27
NEDD9-203ENST00000397378 TMC1Q8TDI8 760 aa13.36□□□□□ -0.27
NEDD9-203ENST00000397378 PUS7Q96PZ0 661 aaKnown RBP13.36□□□□□ -0.27
NEDD9-203ENST00000397378 SIN3AQ96ST3 1273 aa13.36□□□□□ -0.27
NEDD9-203ENST00000397378 MAP3K19Q56UN5 1328 aa13.36□□□□□ -0.27
NEDD9-203ENST00000397378 RASSF7Q02833 373 aa13.35□□□□□ -0.27
NEDD9-203ENST00000397378 TRAPPC3LQ5T215 181 aa13.35□□□□□ -0.27
NEDD9-203ENST00000397378 NBPF6Q5VWK0 638 aa13.35□□□□□ -0.27
NEDD9-203ENST00000397378 NBPF4Q96M43 638 aa13.35□□□□□ -0.27
NEDD9-203ENST00000397378 CREBZFQ9NS37 354 aa13.35□□□□□ -0.27
NEDD9-203ENST00000397378 ZC3H4Q9UPT8 1303 aaKnown RBP13.35□□□□□ -0.27
NEDD9-203ENST00000397378 TIAM2Q8IVF5 1701 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 GLTPD2A6NH11 291 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 ATP6V1AP38606 617 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 LBX1P52954 281 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 ITPK1Q13572 414 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 PIGBQ92521 554 aa13.34□□□□□ -0.27
NEDD9-203ENST00000397378 RTCBQ9Y3I0 505 aaKnown RBP13.34□□□□□ -0.27
NEDD9-203ENST00000397378 SMG6Q86US8 1419 aaKnown RBP13.33□□□□□ -0.28
NEDD9-203ENST00000397378 CCDC85CA6NKD9 419 aa13.32□□□□□ -0.28
NEDD9-203ENST00000397378 FBLN1P23142 703 aa13.32□□□□□ -0.28
NEDD9-203ENST00000397378 CARD11Q9BXL7 1154 aa13.32□□□□□ -0.28
NEDD9-203ENST00000397378 CNTNAP1P78357 1384 aa13.32□□□□□ -0.28
NEDD9-203ENST00000397378 CYP27B1O15528 508 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 GYS1P13807 737 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 CHRNA5P30532 468 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 NEUROD1Q13562 356 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 COG3Q96JB2 828 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 RTL1A6NKG5 1358 aa13.31□□□□□ -0.28
NEDD9-203ENST00000397378 CCDC88AQ3V6T2 1871 aa13.3□□□□□ -0.28
NEDD9-203ENST00000397378 LMNB1P20700 586 aa13.3□□□□□ -0.28
NEDD9-203ENST00000397378 RFC4P35249 363 aa13.3□□□□□ -0.28
NEDD9-203ENST00000397378 TMOD3Q9NYL9 352 aa13.3□□□□□ -0.28
NEDD9-203ENST00000397378 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
NEDD9-203ENST00000397378 KDM6AO15550 1401 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-203ENST00000397378 ARHGEF1Q92888 912 aaKnown RBP13.29□□□□□ -0.28
NEDD9-203ENST00000397378 CHADLQ6NUI6 762 aa13.28□□□□□ -0.28
NEDD9-203ENST00000397378 VIRMAQ69YN4 1812 aaKnown RBP13.27□□□□□ -0.28
NEDD9-203ENST00000397378 ADRA2BP18089 450 aa13.27□□□□□ -0.29
NEDD9-203ENST00000397378 VEGFBP49765 207 aa13.27□□□□□ -0.29
NEDD9-203ENST00000397378 RGS19P49795 217 aa13.27□□□□□ -0.29
NEDD9-203ENST00000397378 RRS1Q15050 365 aaKnown RBP13.27□□□□□ -0.29
NEDD9-203ENST00000397378 DPY19L2Q6NUT2 758 aa13.27□□□□□ -0.29
NEDD9-203ENST00000397378 POTECB2RU33 542 aa13.26□□□□□ -0.29
NEDD9-203ENST00000397378 HSPA8P11142 646 aaKnown RBP13.26□□□□□ -0.29
NEDD9-203ENST00000397378 CFAP44Q96MT7 982 aa13.26□□□□□ -0.29
NEDD9-203ENST00000397378 WBP1LQ9NX94 342 aa13.26□□□□□ -0.29
NEDD9-203ENST00000397378 COL5A3P25940 1745 aaPredicted RBP13.25□□□□□ -0.29
NEDD9-203ENST00000397378 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 POTEIP0CG38 1075 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 POTEJP0CG39 1038 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 TESK2Q96S53 571 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 RBM42Q9BTD8 480 aaKnown RBP13.24□□□□□ -0.29
NEDD9-203ENST00000397378 ATG3Q9NT62 314 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 KIF20BQ96Q89 1820 aa13.24□□□□□ -0.29
NEDD9-203ENST00000397378 KDRP35968 1356 aa13.23□□□□□ -0.29
NEDD9-203ENST00000397378 RPS6KA4O75676 772 aa13.23□□□□□ -0.29
NEDD9-203ENST00000397378 DDR1Q08345 913 aa13.23□□□□□ -0.29
NEDD9-203ENST00000397378 NKX1-1Q15270 411 aaPredicted RBP13.23□□□□□ -0.29
NEDD9-203ENST00000397378 SPG7Q9UQ90 795 aa13.23□□□□□ -0.29
NEDD9-203ENST00000397378 INSRP06213 1382 aa13.22□□□□□ -0.29
NEDD9-203ENST00000397378 KIF24Q5T7B8 1368 aa13.22□□□□□ -0.29
NEDD9-203ENST00000397378 CNTNAP4Q9C0A0 1308 aa13.22□□□□□ -0.29
NEDD9-203ENST00000397378 FKBP8Q14318 412 aa13.22□□□□□ -0.29
NEDD9-203ENST00000397378 RC3H1Q5TC82 1133 aaKnown RBP13.22□□□□□ -0.29
NEDD9-203ENST00000397378 SRP68Q9UHB9 627 aaKnown RBP13.22□□□□□ -0.29
NEDD9-203ENST00000397378 TMEM88BA6NKF7 163 aa13.21□□□□□ -0.29
NEDD9-203ENST00000397378 FYB1O15117 783 aa13.21□□□□□ -0.29
NEDD9-203ENST00000397378 HSP90AB2PQ58FF8 381 aa13.21□□□□□ -0.29
NEDD9-203ENST00000397378 ZNF831Q5JPB2 1677 aa13.21□□□□□ -0.3
NEDD9-203ENST00000397378 FLT4P35916 1363 aa13.2□□□□□ -0.3
NEDD9-203ENST00000397378 DLEC1Q9Y238 1755 aa13.2□□□□□ -0.3
NEDD9-203ENST00000397378 PASKQ96RG2 1323 aa13.2□□□□□ -0.3
NEDD9-203ENST00000397378 ST20-MTHFSA0A0A6YYL1 179 aa13.2□□□□□ -0.3
NEDD9-203ENST00000397378 MAP2K1Q02750 393 aaPredicted RBP13.2□□□□□ -0.3
NEDD9-203ENST00000397378 MYH14Q7Z406 1995 aaKnown RBP13.2□□□□□ -0.3
NEDD9-203ENST00000397378 USP42Q9H9J4 1324 aaKnown RBP13.19□□□□□ -0.3
NEDD9-203ENST00000397378 NFKBIEO00221 500 aa13.19□□□□□ -0.3
NEDD9-203ENST00000397378 POLRMTO00411 1230 aaKnown RBP13.19□□□□□ -0.3
NEDD9-203ENST00000397378 ERFEQ4G0M1 354 aa13.19□□□□□ -0.3
NEDD9-203ENST00000397378 SLC4A9Q96Q91 983 aa13.19□□□□□ -0.3
NEDD9-203ENST00000397378 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
NEDD9-203ENST00000397378 NCAPD2Q15021 1401 aa13.19□□□□□ -0.3
NEDD9-203ENST00000397378 DICER1Q9UPY3 1922 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms