RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 NFATC2IPQ8NCF5 419 aa19.47■□□□□ 0.71
SEC13-208ENST00000397109 U2AF1L5P0DN76 240 aaPredicted RBP19.46■□□□□ 0.71
SEC13-208ENST00000397109 ATP6V1AP38606 617 aa19.46■□□□□ 0.71
SEC13-208ENST00000397109 PTGER2P43116 358 aa19.46■□□□□ 0.71
SEC13-208ENST00000397109 U2AF1Q01081 240 aaKnown RBP eCLIP19.46■□□□□ 0.71
SEC13-208ENST00000397109 RALBP1Q15311 655 aa19.46■□□□□ 0.71
SEC13-208ENST00000397109 AK7Q96M32 723 aa19.46■□□□□ 0.71
SEC13-208ENST00000397109 SCN11AQ9UI33 1791 aa19.45■□□□□ 0.7
SEC13-208ENST00000397109 RNMTO43148 476 aaKnown RBP19.45■□□□□ 0.7
SEC13-208ENST00000397109 FCHSD2O94868 740 aa19.44■□□□□ 0.7
SEC13-208ENST00000397109 RBM42Q9BTD8 480 aaKnown RBP19.44■□□□□ 0.7
SEC13-208ENST00000397109 RSPH6AQ9H0K4 717 aa19.44■□□□□ 0.7
SEC13-208ENST00000397109 SLC52A2Q9HAB3 445 aa19.44■□□□□ 0.7
SEC13-208ENST00000397109 LGR6Q9HBX8 967 aa19.44■□□□□ 0.7
SEC13-208ENST00000397109 TUBGCP6Q96RT7 1819 aa19.44■□□□□ 0.7
SEC13-208ENST00000397109 MSH5O43196 834 aa19.43■□□□□ 0.7
SEC13-208ENST00000397109 PRKAR2BP31323 418 aa19.43■□□□□ 0.7
SEC13-208ENST00000397109 SGIP1Q9BQI5 828 aa19.43■□□□□ 0.7
SEC13-208ENST00000397109 ITPK1Q13572 414 aa19.42■□□□□ 0.7
SEC13-208ENST00000397109 COL23A1Q86Y22 540 aaPredicted RBP19.42■□□□□ 0.7
SEC13-208ENST00000397109 LINC00116Q8NCU8 138 aa19.42■□□□□ 0.7
SEC13-208ENST00000397109 C4BP0C0L5 1744 aa19.42■□□□□ 0.7
SEC13-208ENST00000397109 GNAT3A8MTJ3 354 aa19.41■□□□□ 0.7
SEC13-208ENST00000397109 POLD1P28340 1107 aa19.41■□□□□ 0.7
SEC13-208ENST00000397109 MAP3K5Q99683 1374 aa19.41■□□□□ 0.7
SEC13-208ENST00000397109 ZNF831Q5JPB2 1677 aa19.4■□□□□ 0.7
SEC13-208ENST00000397109 SSFA2P28290 1259 aa19.4■□□□□ 0.7
SEC13-208ENST00000397109 ARXQ96QS3 562 aa19.4■□□□□ 0.7
SEC13-208ENST00000397109 MRC1P22897 1456 aa19.39■□□□□ 0.69
SEC13-208ENST00000397109 PTCD1O75127 700 aaKnown RBP19.39■□□□□ 0.69
SEC13-208ENST00000397109 RC3H1Q5TC82 1133 aaKnown RBP19.39■□□□□ 0.69
SEC13-208ENST00000397109 PHACTR3Q96KR7 559 aa19.39■□□□□ 0.69
SEC13-208ENST00000397109 SLC4A9Q96Q91 983 aa19.39■□□□□ 0.69
SEC13-208ENST00000397109 ADAMTS7Q9UKP4 1686 aa19.38■□□□□ 0.69
SEC13-208ENST00000397109 NEFMP07197 916 aa19.38■□□□□ 0.69
SEC13-208ENST00000397109 VIRMAQ69YN4 1812 aaKnown RBP19.38■□□□□ 0.69
SEC13-208ENST00000397109 GNPATO15228 680 aa19.37■□□□□ 0.69
SEC13-208ENST00000397109 TEFQ10587 303 aa19.37■□□□□ 0.69
SEC13-208ENST00000397109 UBR3Q6ZT12 1888 aa19.37■□□□□ 0.69
SEC13-208ENST00000397109 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.36■□□□□ 0.69
SEC13-208ENST00000397109 IL17REQ8NFR9 667 aa19.36■□□□□ 0.69
SEC13-208ENST00000397109 PNNQ9H307 717 aaKnown RBP19.36■□□□□ 0.69
SEC13-208ENST00000397109 MYBBP1AQ9BQG0 1328 aaKnown RBP19.36■□□□□ 0.69
SEC13-208ENST00000397109 CNTNAP4Q9C0A0 1308 aa19.36■□□□□ 0.69
SEC13-208ENST00000397109 PHF14O94880 888 aa19.35■□□□□ 0.69
SEC13-208ENST00000397109 RTCBQ9Y3I0 505 aaKnown RBP19.35■□□□□ 0.69
SEC13-208ENST00000397109 COL24A1Q17RW2 1714 aa19.35■□□□□ 0.69
SEC13-208ENST00000397109 FHDC1Q9C0D6 1143 aaPredicted RBP19.35■□□□□ 0.69
SEC13-208ENST00000397109 DCAF8L1A6NGE4 600 aa19.34■□□□□ 0.69
SEC13-208ENST00000397109 SLC39A6Q13433 755 aa19.34■□□□□ 0.69
SEC13-208ENST00000397109 AMIGO3Q86WK7 504 aa19.34■□□□□ 0.69
SEC13-208ENST00000397109 RTF1Q92541 710 aaKnown RBP19.34■□□□□ 0.69
SEC13-208ENST00000397109 HTATSF1O43719 755 aaKnown RBP19.33■□□□□ 0.68
SEC13-208ENST00000397109 RPS6KA4O75676 772 aa19.33■□□□□ 0.68
SEC13-208ENST00000397109 ADRA2BP18089 450 aa19.33■□□□□ 0.68
SEC13-208ENST00000397109 SYT17Q9BSW7 474 aa19.33■□□□□ 0.68
SEC13-208ENST00000397109 CEMIPQ8WUJ3 1361 aa19.33■□□□□ 0.68
SEC13-208ENST00000397109 TRAPPC3LQ5T215 181 aa19.32■□□□□ 0.68
SEC13-208ENST00000397109 TTC5Q8N0Z6 440 aa19.32■□□□□ 0.68
SEC13-208ENST00000397109 VSIG10Q8N0Z9 540 aa19.32■□□□□ 0.68
SEC13-208ENST00000397109 COL5A3P25940 1745 aaPredicted RBP19.31■□□□□ 0.68
SEC13-208ENST00000397109 CRKLP46109 303 aaKnown RBP19.31■□□□□ 0.68
SEC13-208ENST00000397109 MSL1Q68DK7 614 aa19.31■□□□□ 0.68
SEC13-208ENST00000397109 CICQ96RK0 1608 aaPredicted RBP19.3■□□□□ 0.68
SEC13-208ENST00000397109 SMIM5Q71RC9 77 aa19.3■□□□□ 0.68
SEC13-208ENST00000397109 PLEKHF1Q96S99 279 aa19.29■□□□□ 0.68
SEC13-208ENST00000397109 MYH14Q7Z406 1995 aaKnown RBP19.29■□□□□ 0.68
SEC13-208ENST00000397109 ZNF790Q6PG37 636 aa19.28■□□□□ 0.68
SEC13-208ENST00000397109 DNAJC10Q8IXB1 793 aa19.28■□□□□ 0.68
SEC13-208ENST00000397109 PRKRIP1Q9H875 184 aaPredicted RBP19.28■□□□□ 0.68
SEC13-208ENST00000397109 RFC4P35249 363 aa19.28■□□□□ 0.68
SEC13-208ENST00000397109 ARHGEF1Q92888 912 aaKnown RBP19.28■□□□□ 0.68
SEC13-208ENST00000397109 KCPQ6ZWJ8 1503 aa19.27■□□□□ 0.68
SEC13-208ENST00000397109 MAPK8IP3Q9UPT6 1336 aa19.27■□□□□ 0.68
SEC13-208ENST00000397109 TJP1Q07157 1748 aa19.27■□□□□ 0.68
SEC13-208ENST00000397109 BTBD11A6QL63 1104 aa19.27■□□□□ 0.67
SEC13-208ENST00000397109 CYP19A1P11511 503 aaPredicted RBP19.27■□□□□ 0.67
SEC13-208ENST00000397109 TEX13AQ9BXU3 409 aaPredicted RBP19.27■□□□□ 0.67
SEC13-208ENST00000397109 CCDC87Q9NVE4 849 aa19.27■□□□□ 0.67
SEC13-208ENST00000397109 SIPA1L3O60292 1781 aaPredicted RBP19.27■□□□□ 0.67
SEC13-208ENST00000397109 NFE2L2Q16236 605 aa19.26■□□□□ 0.67
SEC13-208ENST00000397109 INTS5Q6P9B9 1019 aaKnown RBP19.26■□□□□ 0.67
SEC13-208ENST00000397109 MCM10Q7L590 875 aa19.26■□□□□ 0.67
SEC13-208ENST00000397109 KLHL34Q8N239 644 aa19.26■□□□□ 0.67
SEC13-208ENST00000397109 NLGN1Q8N2Q7 840 aa19.26■□□□□ 0.67
SEC13-208ENST00000397109 STARD3NLO95772 234 aa19.25■□□□□ 0.67
SEC13-208ENST00000397109 ZNF496Q96IT1 587 aaPredicted RBP19.25■□□□□ 0.67
SEC13-208ENST00000397109 FMNL2Q96PY5 1086 aa19.25■□□□□ 0.67
SEC13-208ENST00000397109 UBR2Q8IWV8 1755 aa19.25■□□□□ 0.67
SEC13-208ENST00000397109 HEG1Q9ULI3 1381 aa19.24■□□□□ 0.67
SEC13-208ENST00000397109 DCTN1Q14203 1278 aa19.23■□□□□ 0.67
SEC13-208ENST00000397109 WDR43Q15061 677 aaKnown RBP eCLIP19.23■□□□□ 0.671e-6■■■□□ 17.5
SEC13-208ENST00000397109 TAF7Q15545 349 aaPredicted RBP19.22■□□□□ 0.67
SEC13-208ENST00000397109 CD2APQ9Y5K6 639 aa19.22■□□□□ 0.67
SEC13-208ENST00000397109 GYS1P13807 737 aa19.21■□□□□ 0.67
SEC13-208ENST00000397109 PNISRQ8TF01 805 aaKnown RBP19.21■□□□□ 0.67
SEC13-208ENST00000397109 SOS1Q07889 1333 aaPredicted RBP19.21■□□□□ 0.67
SEC13-208ENST00000397109 DLG5Q8TDM6 1919 aa19.2■□□□□ 0.66
SEC13-208ENST00000397109 MMP10P09238 476 aa19.2■□□□□ 0.66
SEC13-208ENST00000397109 ZBTB1Q9Y2K1 713 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms