RNA–Protein interactions for RNA: ENST00000397036.4

MCF2L-209, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2 BASIC

Gene MCF2L, Length 1,544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-209ENST00000397036 MRC1P22897 1456 aa17.49■□□□□ 0.39
MCF2L-209ENST00000397036 EIF4A1P60842 406 aaKnown RBP17.48■□□□□ 0.39
MCF2L-209ENST00000397036 HEG1Q9ULI3 1381 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 MEX3CQ5U5Q3 659 aaKnown RBP17.47■□□□□ 0.39
MCF2L-209ENST00000397036 KIF16BQ96L93 1317 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 IPO8O15397 1037 aaKnown RBP17.47■□□□□ 0.39
MCF2L-209ENST00000397036 MS4A1P11836 297 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 NFATC2IPQ8NCF5 419 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 DDX54Q8TDD1 881 aaKnown RBP17.47■□□□□ 0.39
MCF2L-209ENST00000397036 ARHGAP45Q92619 1136 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 SMC4Q9NTJ3 1288 aa17.47■□□□□ 0.39
MCF2L-209ENST00000397036 TNS2Q63HR2 1409 aa17.46■□□□□ 0.39
MCF2L-209ENST00000397036 SCN11AQ9UI33 1791 aa17.46■□□□□ 0.39
MCF2L-209ENST00000397036 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.46■□□□□ 0.39
MCF2L-209ENST00000397036 CABP4P57796 275 aa17.46■□□□□ 0.39
MCF2L-209ENST00000397036 MRPL50Q8N5N7 158 aaKnown RBP17.46■□□□□ 0.39
MCF2L-209ENST00000397036 ELL2O00472 640 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-209ENST00000397036 PLIN1O60240 522 aa17.45■□□□□ 0.38
MCF2L-209ENST00000397036 DDB1Q16531 1140 aa17.45■□□□□ 0.38
MCF2L-209ENST00000397036 ZNF790Q6PG37 636 aa17.45■□□□□ 0.38
MCF2L-209ENST00000397036 CCDC9Q9Y3X0 531 aaKnown RBP17.45■□□□□ 0.38
MCF2L-209ENST00000397036 AFF2P51816 1311 aa17.44■□□□□ 0.38
MCF2L-209ENST00000397036 ONECUT3O60422 494 aaPredicted RBP17.44■□□□□ 0.38
MCF2L-209ENST00000397036 KRT24Q2M2I5 525 aa17.44■□□□□ 0.38
MCF2L-209ENST00000397036 ZKSCAN2Q63HK3 967 aa17.44■□□□□ 0.38
MCF2L-209ENST00000397036 FBXO41Q8TF61 875 aa17.44■□□□□ 0.38
MCF2L-209ENST00000397036 TRPC5Q9UL62 973 aaPredicted RBP17.43■□□□□ 0.38
MCF2L-209ENST00000397036 SIPA1L3O60292 1781 aaPredicted RBP17.43■□□□□ 0.38
MCF2L-209ENST00000397036 CCDC30Q5VVM6 783 aa17.42■□□□□ 0.38
MCF2L-209ENST00000397036 GJD4Q96KN9 370 aaPredicted RBP17.42■□□□□ 0.38
MCF2L-209ENST00000397036 ATRNO75882 1429 aa17.42■□□□□ 0.38
MCF2L-209ENST00000397036 SHANK3Q9BYB0 1731 aa17.42■□□□□ 0.38
MCF2L-209ENST00000397036 KCNQ3O43525 872 aa17.42■□□□□ 0.38
MCF2L-209ENST00000397036 GIGYF1O75420 1035 aaPredicted RBP17.42■□□□□ 0.38
MCF2L-209ENST00000397036 BCL2L13Q9BXK5 485 aa17.42■□□□□ 0.38
MCF2L-209ENST00000397036 KDM3BQ7LBC6 1761 aa17.41■□□□□ 0.38
MCF2L-209ENST00000397036 IRX6P78412 446 aaPredicted RBP17.41■□□□□ 0.38
MCF2L-209ENST00000397036 ATF7IPQ6VMQ6 1270 aa17.41■□□□□ 0.38
MCF2L-209ENST00000397036 NOB1Q9ULX3 412 aaKnown RBP17.41■□□□□ 0.38
MCF2L-209ENST00000397036 WNK3Q9BYP7 1800 aa17.4■□□□□ 0.38
MCF2L-209ENST00000397036 CANXP27824 592 aaKnown RBP17.4■□□□□ 0.38
MCF2L-209ENST00000397036 AAMPQ13685 434 aa17.4■□□□□ 0.38
MCF2L-209ENST00000397036 FRAT1Q92837 279 aaPredicted RBP17.4■□□□□ 0.38
MCF2L-209ENST00000397036 PPP4R2Q9NY27 417 aa17.4■□□□□ 0.38
MCF2L-209ENST00000397036 FAM98CQ17RN3 349 aaKnown RBP17.39■□□□□ 0.37
MCF2L-209ENST00000397036 C20orf194Q5TEA3 1177 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 TTC5Q8N0Z6 440 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 MARCH10Q8NA82 808 aaPredicted RBP17.38■□□□□ 0.37
MCF2L-209ENST00000397036 FMNL2Q96PY5 1086 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 STK31Q9BXU1 1019 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 API5Q9BZZ5 524 aaKnown RBP17.38■□□□□ 0.37
MCF2L-209ENST00000397036 TMOD3Q9NYL9 352 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 PTPRCP08575 1304 aa17.38■□□□□ 0.37
MCF2L-209ENST00000397036 VIRMAQ69YN4 1812 aaKnown RBP17.38■□□□□ 0.37
MCF2L-209ENST00000397036 TRIM27P14373 513 aa17.37■□□□□ 0.37
MCF2L-209ENST00000397036 SLC39A6Q13433 755 aa17.37■□□□□ 0.37
MCF2L-209ENST00000397036 DZIP1LQ8IYY4 767 aaKnown RBP17.37■□□□□ 0.37
MCF2L-209ENST00000397036 SLC4A2P04920 1241 aa17.37■□□□□ 0.37
MCF2L-209ENST00000397036 SNRPA1P09661 255 aaKnown RBP17.37■□□□□ 0.37
MCF2L-209ENST00000397036 HDGFL1Q5TGJ6 251 aa17.37■□□□□ 0.37
MCF2L-209ENST00000397036 ZNF496Q96IT1 587 aaPredicted RBP17.37■□□□□ 0.37
MCF2L-209ENST00000397036 QTRT2Q9H974 415 aaKnown RBP17.37■□□□□ 0.37
MCF2L-209ENST00000397036 EXOC6Q8TAG9 804 aa17.36■□□□□ 0.37
MCF2L-209ENST00000397036 PIGBQ92521 554 aa17.36■□□□□ 0.37
MCF2L-209ENST00000397036 CRBNQ96SW2 442 aa17.36■□□□□ 0.37
MCF2L-209ENST00000397036 BCL9O00512 1426 aa17.36■□□□□ 0.37
MCF2L-209ENST00000397036 ZNF772Q68DY9 489 aaPredicted RBP17.35■□□□□ 0.37
MCF2L-209ENST00000397036 RLBP1P12271 317 aa17.34■□□□□ 0.37
MCF2L-209ENST00000397036 VSIG10Q8N0Z9 540 aa17.34■□□□□ 0.37
MCF2L-209ENST00000397036 FTSJ3Q8IY81 847 aaKnown RBP17.33■□□□□ 0.37
MCF2L-209ENST00000397036 PANK1Q8TE04 598 aa17.33■□□□□ 0.37
MCF2L-209ENST00000397036 DBF4Q9UBU7 674 aaPredicted RBP17.33■□□□□ 0.37
MCF2L-209ENST00000397036 THSD7AQ9UPZ6 1657 aa17.33■□□□□ 0.36
MCF2L-209ENST00000397036 GLI3P10071 1580 aa17.33■□□□□ 0.36
MCF2L-209ENST00000397036 CACNA1FO60840 1977 aa17.33■□□□□ 0.36
MCF2L-209ENST00000397036 TCERG1O14776 1098 aaKnown RBP17.32■□□□□ 0.36
MCF2L-209ENST00000397036 MVPQ14764 893 aaKnown RBP17.32■□□□□ 0.36
MCF2L-209ENST00000397036 TEX13AQ9BXU3 409 aaPredicted RBP17.32■□□□□ 0.36
MCF2L-209ENST00000397036 ABCC4O15439 1325 aa17.32■□□□□ 0.36
MCF2L-209ENST00000397036 ERBB4Q15303 1308 aa17.32■□□□□ 0.36
MCF2L-209ENST00000397036 PRIM1P49642 420 aaKnown RBP17.31■□□□□ 0.36
MCF2L-209ENST00000397036 CHMP4BQ9H444 224 aaKnown RBP17.31■□□□□ 0.36
MCF2L-209ENST00000397036 ATG3Q9NT62 314 aa17.31■□□□□ 0.36
MCF2L-209ENST00000397036 EIF2S2P20042 333 aaKnown RBP17.31■□□□□ 0.36
MCF2L-209ENST00000397036 DDX21Q9NR30 783 aaKnown RBP eCLIP17.31■□□□□ 0.36
MCF2L-209ENST00000397036 HYPKQ9NX55 129 aa17.31■□□□□ 0.36
MCF2L-209ENST00000397036 COG6Q9Y2V7 657 aa17.31■□□□□ 0.36
MCF2L-209ENST00000397036 TOGARAM1Q9Y4F4 1720 aa17.3■□□□□ 0.36
MCF2L-209ENST00000397036 FLIIQ13045 1269 aa17.3■□□□□ 0.36
MCF2L-209ENST00000397036 INTS3Q68E01 1043 aaKnown RBP17.3■□□□□ 0.36
MCF2L-209ENST00000397036 CLUAP1Q96AJ1 413 aa17.3■□□□□ 0.36
MCF2L-209ENST00000397036 DDX19BQ9UMR2 479 aa17.3■□□□□ 0.36
MCF2L-209ENST00000397036 TNNQ9UQP3 1299 aa17.3■□□□□ 0.36
MCF2L-209ENST00000397036 ASAP1Q9ULH1 1129 aa17.29■□□□□ 0.36
MCF2L-209ENST00000397036 KCPQ6ZWJ8 1503 aa17.29■□□□□ 0.36
MCF2L-209ENST00000397036 PAPPAQ13219 1627 aa17.29■□□□□ 0.36
MCF2L-209ENST00000397036 RBM6P78332 1123 aaKnown RBP17.28■□□□□ 0.36
MCF2L-209ENST00000397036 PDIA6Q15084 440 aa17.28■□□□□ 0.36
MCF2L-209ENST00000397036 G2E3Q7L622 706 aa17.28■□□□□ 0.36
MCF2L-209ENST00000397036 SEPT12Q8IYM1 358 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms