RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 SPDYE4A6NLX3 237 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 HSF2BPO75031 334 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 PPP6R1Q9UPN7 881 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 RAPGEF2Q9Y4G8 1499 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 MRPS9P82933 396 aaKnown RBP11.97□□□□□ -0.49
COL4A4-201ENST00000396625 PPP4R3AQ6IN85 833 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 ANAPC4Q9UJX5 808 aa11.97□□□□□ -0.49
COL4A4-201ENST00000396625 ATP2C2O75185 946 aa11.96□□□□□ -0.49
COL4A4-201ENST00000396625 XPCQ01831 940 aaPredicted RBP11.96□□□□□ -0.49
COL4A4-201ENST00000396625 GCC1Q96CN9 775 aa11.96□□□□□ -0.49
COL4A4-201ENST00000396625 CFAP65Q6ZU64 1925 aaKnown RBP11.96□□□□□ -0.5
COL4A4-201ENST00000396625 TDO2P48775 406 aa11.96□□□□□ -0.5
COL4A4-201ENST00000396625 TNIP1Q15025 636 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 RAPGEF4Q8WZA2 1011 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 KIF4AO95239 1232 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PDIA4P13667 645 aaKnown RBP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 LIG1P18858 919 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PRPF4BQ13523 1007 aaKnown RBP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PIBF1Q8WXW3 757 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 UBA5Q9GZZ9 404 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 SSX2IPQ9Y2D8 614 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PAIP2Q9BPZ3 127 aaKnown RBP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 SETD1BQ9UPS6 1966 aaKnown RBP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 YEATS4O95619 227 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 HNRNPMP52272 730 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 RBM5P52756 815 aaKnown RBP eCLIP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 BLOC1S2Q6QNY1 142 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 JADE2Q9NQC1 790 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 CIZ1Q9ULV3 898 aaPredicted RBP11.95□□□□□ -0.5
COL4A4-201ENST00000396625 DYNC1I1O14576 645 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 MIPOL1Q8TD10 442 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 SCLT1Q96NL6 688 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PSMC4P43686 418 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 SIL1Q9H173 461 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 PDZRN3Q9UPQ7 1066 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 AKNAQ7Z591 1439 aa11.95□□□□□ -0.5
COL4A4-201ENST00000396625 CEP57Q86XR8 500 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 DDX12PQ92771 950 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 FERMT1Q9BQL6 677 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 IQCGQ9H095 443 aaKnown RBP11.94□□□□□ -0.5
COL4A4-201ENST00000396625 FHOD3Q2V2M9 1422 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 JAKMIP1Q96N16 626 aaKnown RBP11.94□□□□□ -0.5
COL4A4-201ENST00000396625 ANO10Q9NW15 660 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 SWAP70Q9UH65 585 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 FERMT2Q96AC1 680 aa11.94□□□□□ -0.5
COL4A4-201ENST00000396625 TRMT1Q9NXH9 659 aaKnown RBP11.94□□□□□ -0.5
COL4A4-201ENST00000396625 RPUSD2Q8IZ73 545 aaKnown RBP11.94□□□□□ -0.5
COL4A4-201ENST00000396625 GON4LQ3T8J9 2241 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 CCDC96Q2M329 555 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 ZSCAN31Q96LW9 406 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 SRCIN1Q9C0H9 1055 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 MCM4P33991 863 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 ZSCAN25Q6NSZ9 544 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 KRT222Q8N1A0 295 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 TDRD12Q587J7 1177 aaKnown RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 ARL1P40616 181 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 BRD4O60885 1362 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 GSDMDP57764 484 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 TTC31Q49AM3 519 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 EHBP1Q8NDI1 1231 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 MYO10Q9HD67 2058 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 CCDC155Q8N6L0 562 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 VGFO15240 615 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 FKBP4Q02790 459 aaKnown RBP eCLIP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 CWC25Q9NXE8 425 aaPredicted RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 PLEKHH1Q9ULM0 1364 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 NEMFO60524 1076 aa11.93□□□□□ -0.5
COL4A4-201ENST00000396625 SNW1Q13573 536 aaKnown RBP11.93□□□□□ -0.5
COL4A4-201ENST00000396625 KRT32Q14532 448 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 SMC6Q96SB8 1091 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 RSPH14Q9UHP6 348 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 STAC3Q96MF2 364 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 CWC27Q6UX04 472 aaKnown RBP11.92□□□□□ -0.5
COL4A4-201ENST00000396625 GOLGA6L9A6NEM1 432 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 FAM177BA6PVY3 158 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 USP5P45974 858 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 TPD52P55327 224 aaPredicted RBP11.92□□□□□ -0.5
COL4A4-201ENST00000396625 SETSIPP0DME0 302 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 CCDC121Q6ZUS5 278 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 AACSQ86V21 672 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 NOB1Q9ULX3 412 aaKnown RBP11.92□□□□□ -0.5
COL4A4-201ENST00000396625 NBPF1Q3BBV0 1214 aa11.92□□□□□ -0.5
COL4A4-201ENST00000396625 RSRC1Q96IZ7 334 aaKnown RBP11.92□□□□□ -0.5
COL4A4-201ENST00000396625 ZFYP08048 801 aaPredicted RBP11.91□□□□□ -0.5
COL4A4-201ENST00000396625 CKAP4Q07065 602 aaKnown RBP11.91□□□□□ -0.5
COL4A4-201ENST00000396625 MAP7D1Q3KQU3 841 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 CEP135Q66GS9 1140 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 STMN4Q9H169 189 aaPredicted RBP11.91□□□□□ -0.5
COL4A4-201ENST00000396625 RASAL2Q9UJF2 1139 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 STX1AQ16623 288 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 CTNNA3Q9UI47 895 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 CCDC171Q6TFL3 1326 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 DRC1Q96MC2 740 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 PHAXQ9H814 394 aaKnown RBP11.91□□□□□ -0.5
COL4A4-201ENST00000396625 SCAPERQ9BY12 1400 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 TTC16Q8NEE8 873 aa11.91□□□□□ -0.5
COL4A4-201ENST00000396625 CCT4P50991 539 aaKnown RBP11.9□□□□□ -0.5
COL4A4-201ENST00000396625 MKRN1Q9UHC7 482 aaKnown RBP11.9□□□□□ -0.5
COL4A4-201ENST00000396625 PAXBP1Q9Y5B6 917 aa11.9□□□□□ -0.5
COL4A4-201ENST00000396625 ZBTB16Q05516 673 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms