RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CWC22Q9HCG8 908 aaKnown RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 PCDH11XQ9BZA7 1347 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 PCDH11YQ9BZA8 1340 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 CHL1O00533 1208 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 TMOD3Q9NYL9 352 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 SLAIN2Q9P270 581 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 KNDC1Q76NI1 1749 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 IL13P35225 146 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 LNPKQ9C0E8 428 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 METP08581 1390 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 ALDH1L1O75891 902 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 LINS1Q8NG48 757 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 CHMP5Q9NZZ3 219 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 GNL3LQ9NVN8 582 aaKnown RBP4.09□□□□□ -1.75
VPS13C-203ENST00000395896 ZNF330Q9Y3S2 320 aaPredicted RBP4.09□□□□□ -1.75
VPS13C-203ENST00000395896 SENP3-EIF4A1A0A087X0R7 540 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 SMARCC1Q92922 1105 aaPredicted RBP4.09□□□□□ -1.75
VPS13C-203ENST00000395896 MBIPQ9NS73 344 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 AK9Q5TCS8 1911 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 SMC5Q8IY18 1101 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 TBC1D2BQ9UPU7 963 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 FRAT2O75474 233 aaPredicted RBP4.09□□□□□ -1.75
VPS13C-203ENST00000395896 DNAAF4Q8WXU2 420 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 PHF23Q9BUL5 403 aaPredicted RBP4.09□□□□□ -1.75
VPS13C-203ENST00000395896 PDE4DIPQ5VU43 2346 aa4.09□□□□□ -1.75
VPS13C-203ENST00000395896 VAMP4O75379 141 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 ZC3H6P61129 1189 aaKnown RBP4.09□□□□□ -1.76
VPS13C-203ENST00000395896 CTNNA3Q9UI47 895 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 UBR1Q8IWV7 1749 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 CPS1P31327 1500 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 ANKRD24Q8TF21 1146 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 HMGB1P09429 215 aaKnown RBP4.09□□□□□ -1.76
VPS13C-203ENST00000395896 TMEM57Q8N5G2 664 aa4.09□□□□□ -1.76
VPS13C-203ENST00000395896 ANAPC15P60006 121 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 SART3Q15020 963 aaKnown RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 VPS37DQ86XT2 251 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 TRMT2AQ8IZ69 625 aaKnown RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 SYTL4Q96C24 671 aaPredicted RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 CEP126Q9P2H0 1117 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 FBXO3Q9UK99 471 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 IL2RBP14784 551 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 CCDC158Q5M9N0 1113 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 NUTM2GQ5VZR2 741 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 RALYLQ86SE5 291 aaKnown RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 ZNF287Q9HBT7 754 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 ROBO2Q9HCK4 1378 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 MBD3O95983 291 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 NOL10Q9BSC4 688 aaKnown RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 RILPL2Q969X0 211 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 KDRP35968 1356 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 DDX21Q9NR30 783 aaKnown RBP eCLIP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 A0A087WZG4 1122 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 SYNE3Q6ZMZ3 975 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 EYA1Q99502 592 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 PTPRUQ92729 1446 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 ERBB3P21860 1342 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 IGSF1Q8N6C5 1336 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 HOXC9P31274 260 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 MCM10Q7L590 875 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 APBB1O00213 710 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 GNL2Q13823 731 aaKnown RBP4.08□□□□□ -1.76
VPS13C-203ENST00000395896 ANO2Q9NQ90 1003 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 TTC41PQ6P2S7 1318 aa4.08□□□□□ -1.76
VPS13C-203ENST00000395896 NT5C2P49902 561 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 DHX8Q14562 1220 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 DCTPP1Q9H773 170 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 KSR2Q6VAB6 950 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ZCRB1Q8TBF4 217 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ERVV-2B6SEH9 535 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 TMEM94Q12767 1356 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 XBP1P17861 261 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 NBR1Q14596 966 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ANKRD13DQ6ZTN6 518 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 CERS3Q8IU89 383 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ANKRD44Q8N8A2 993 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 NACAP1Q9BZK3 213 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 STRN4Q9NRL3 753 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 MYO9BQ13459 2157 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 GRM8O00222 908 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ZBTB40Q9NUA8 1239 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 TMED8Q6PL24 325 aaPredicted RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 MPHOSPH8Q99549 860 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ERICH2A1L162 156 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 C3P01024 1663 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 RIMS1Q86UR5 1692 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 SLC3A2P08195 630 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 HOOK1Q9UJC3 728 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 MEX3CQ5U5Q3 659 aaKnown RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ZNF790Q6PG37 636 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 U3KPZ7 1027 aaPredicted RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ZFYP08048 801 aaPredicted RBP4.07□□□□□ -1.76
VPS13C-203ENST00000395896 MX1P20591 662 aa4.07□□□□□ -1.76
VPS13C-203ENST00000395896 ARHGAP23Q9P227 1491 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 IGSF3O75054 1194 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 HMG20BQ9P0W2 317 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 ADGRB2O60241 1585 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 CPLX1O14810 134 aa4.06□□□□□ -1.76
VPS13C-203ENST00000395896 TTF1Q15361 905 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-203ENST00000395896 ARHGEF25Q86VW2 580 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms