RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 SCN11AQ9UI33 1791 aa17.61■□□□□ 0.41
VAPB-202ENST00000395802 FAM98CQ17RN3 349 aaKnown RBP17.61■□□□□ 0.41
VAPB-202ENST00000395802 ALDH1L2Q3SY69 923 aa17.61■□□□□ 0.41
VAPB-202ENST00000395802 ATRNO75882 1429 aa17.6■□□□□ 0.41
VAPB-202ENST00000395802 NFATC2IPQ8NCF5 419 aa17.6■□□□□ 0.41
VAPB-202ENST00000395802 MIS18AQ9NYP9 233 aa17.6■□□□□ 0.41
VAPB-202ENST00000395802 MRC1P22897 1456 aa17.6■□□□□ 0.41
VAPB-202ENST00000395802 RARSP54136 660 aaKnown RBP17.59■□□□□ 0.41
VAPB-202ENST00000395802 QTRT2Q9H974 415 aaKnown RBP17.59■□□□□ 0.41
VAPB-202ENST00000395802 VIRMAQ69YN4 1812 aaKnown RBP17.59■□□□□ 0.41
VAPB-202ENST00000395802 A0A0G2JS52 829 aa17.58■□□□□ 0.41
VAPB-202ENST00000395802 VAMP4O75379 141 aa17.58■□□□□ 0.41
VAPB-202ENST00000395802 MYT1Q01538 1121 aa17.58■□□□□ 0.41
VAPB-202ENST00000395802 TTC5Q8N0Z6 440 aa17.58■□□□□ 0.41
VAPB-202ENST00000395802 HOXB7P09629 217 aa17.58■□□□□ 0.4
VAPB-202ENST00000395802 RRP1P56182 461 aaKnown RBP17.58■□□□□ 0.4
VAPB-202ENST00000395802 SHANK3Q9BYB0 1731 aa17.58■□□□□ 0.4
VAPB-202ENST00000395802 ONECUT3O60422 494 aaPredicted RBP17.56■□□□□ 0.4
VAPB-202ENST00000395802 ZNF790Q6PG37 636 aa17.56■□□□□ 0.4
VAPB-202ENST00000395802 C8orf58Q8NAV2 365 aa17.56■□□□□ 0.4
VAPB-202ENST00000395802 SMC4Q9NTJ3 1288 aa17.56■□□□□ 0.4
VAPB-202ENST00000395802 TMOD3Q9NYL9 352 aa17.56■□□□□ 0.4
VAPB-202ENST00000395802 CANXP27824 592 aaKnown RBP17.56■□□□□ 0.4
VAPB-202ENST00000395802 ELL2O00472 640 aaPredicted RBP17.55■□□□□ 0.4
VAPB-202ENST00000395802 BRPF1P55201 1214 aaPredicted RBP17.55■□□□□ 0.4
VAPB-202ENST00000395802 EIF4A1P60842 406 aaKnown RBP17.55■□□□□ 0.4
VAPB-202ENST00000395802 SIPA1L3O60292 1781 aaPredicted RBP17.55■□□□□ 0.4
VAPB-202ENST00000395802 KIF16BQ96L93 1317 aa17.55■□□□□ 0.4
VAPB-202ENST00000395802 IPO8O15397 1037 aaKnown RBP17.54■□□□□ 0.4
VAPB-202ENST00000395802 MS4A1P11836 297 aa17.54■□□□□ 0.4
VAPB-202ENST00000395802 IRX6P78412 446 aaPredicted RBP17.54■□□□□ 0.4
VAPB-202ENST00000395802 ERICH6BQ5W0A0 696 aa17.54■□□□□ 0.4
VAPB-202ENST00000395802 TSPYL6Q8N831 410 aa17.54■□□□□ 0.4
VAPB-202ENST00000395802 KDM3BQ7LBC6 1761 aa17.54■□□□□ 0.4
VAPB-202ENST00000395802 CCDC30Q5VVM6 783 aa17.54■□□□□ 0.4
VAPB-202ENST00000395802 BCAR3O75815 825 aa17.53■□□□□ 0.4
VAPB-202ENST00000395802 SSH1Q8WYL5 1049 aa17.53■□□□□ 0.4
VAPB-202ENST00000395802 STK31Q9BXU1 1019 aa17.53■□□□□ 0.4
VAPB-202ENST00000395802 GLI3P10071 1580 aa17.53■□□□□ 0.4
VAPB-202ENST00000395802 RBM6P78332 1123 aaKnown RBP17.52■□□□□ 0.4
VAPB-202ENST00000395802 MARCH10Q8NA82 808 aaPredicted RBP17.52■□□□□ 0.4
VAPB-202ENST00000395802 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
VAPB-202ENST00000395802 THSD7AQ9UPZ6 1657 aa17.52■□□□□ 0.39
VAPB-202ENST00000395802 ZKSCAN2Q63HK3 967 aa17.5■□□□□ 0.39
VAPB-202ENST00000395802 HEG1Q9ULI3 1381 aa17.5■□□□□ 0.39
VAPB-202ENST00000395802 GIGYF1O75420 1035 aaPredicted RBP17.49■□□□□ 0.39
VAPB-202ENST00000395802 PDE3AQ14432 1141 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 KRT24Q2M2I5 525 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 SEPT12Q8IYM1 358 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 ARHGAP45Q92619 1136 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 FRAT1Q92837 279 aaPredicted RBP17.49■□□□□ 0.39
VAPB-202ENST00000395802 SYTL4Q96C24 671 aaPredicted RBP17.49■□□□□ 0.39
VAPB-202ENST00000395802 BCL2L13Q9BXK5 485 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 SNRPA1P09661 255 aaKnown RBP17.49■□□□□ 0.39
VAPB-202ENST00000395802 SLC39A6Q13433 755 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 HDGFL1Q5TGJ6 251 aa17.49■□□□□ 0.39
VAPB-202ENST00000395802 KCNQ3O43525 872 aa17.48■□□□□ 0.39
VAPB-202ENST00000395802 PIGBQ92521 554 aa17.48■□□□□ 0.39
VAPB-202ENST00000395802 BCL9O00512 1426 aa17.48■□□□□ 0.39
VAPB-202ENST00000395802 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
VAPB-202ENST00000395802 PRIM1P49642 420 aaKnown RBP17.47■□□□□ 0.39
VAPB-202ENST00000395802 TEX13AQ9BXU3 409 aaPredicted RBP17.47■□□□□ 0.39
VAPB-202ENST00000395802 PLIN1O60240 522 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 SLC4A2P04920 1241 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 PTPRCP08575 1304 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 RXRBP28702 533 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 ATF7IPQ6VMQ6 1270 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 FTSJ3Q8IY81 847 aaKnown RBP17.46■□□□□ 0.39
VAPB-202ENST00000395802 VSIG10Q8N0Z9 540 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 ZNF496Q96IT1 587 aaPredicted RBP17.46■□□□□ 0.39
VAPB-202ENST00000395802 NOB1Q9ULX3 412 aaKnown RBP17.46■□□□□ 0.39
VAPB-202ENST00000395802 TOGARAM1Q9Y4F4 1720 aa17.46■□□□□ 0.39
VAPB-202ENST00000395802 API5Q9BZZ5 524 aaKnown RBP17.45■□□□□ 0.38
VAPB-202ENST00000395802 DBF4Q9UBU7 674 aaPredicted RBP17.45■□□□□ 0.38
VAPB-202ENST00000395802 EIF2S2P20042 333 aaKnown RBP17.44■□□□□ 0.38
VAPB-202ENST00000395802 SMARCC1Q92922 1105 aaPredicted RBP17.44■□□□□ 0.38
VAPB-202ENST00000395802 KAT6BQ8WYB5 2073 aa17.44■□□□□ 0.38
VAPB-202ENST00000395802 ITGB4P16144 1822 aa17.44■□□□□ 0.38
VAPB-202ENST00000395802 DOT1LQ8TEK3 1739 aa17.44■□□□□ 0.38
VAPB-202ENST00000395802 CACNA1FO60840 1977 aa17.44■□□□□ 0.38
VAPB-202ENST00000395802 PAPPAQ13219 1627 aa17.43■□□□□ 0.38
VAPB-202ENST00000395802 ATG3Q9NT62 314 aa17.43■□□□□ 0.38
VAPB-202ENST00000395802 KRT27Q7Z3Y8 459 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 DZIP1LQ8IYY4 767 aaKnown RBP17.42■□□□□ 0.38
VAPB-202ENST00000395802 ACSBG1Q96GR2 724 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 ERBB4Q15303 1308 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 AAMPQ13685 434 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 FAM196AQ6ZSG2 479 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 CHMP4BQ9H444 224 aaKnown RBP17.42■□□□□ 0.38
VAPB-202ENST00000395802 ASAP1Q9ULH1 1129 aa17.42■□□□□ 0.38
VAPB-202ENST00000395802 UBR2Q8IWV8 1755 aa17.41■□□□□ 0.38
VAPB-202ENST00000395802 PTCD1O75127 700 aaKnown RBP17.41■□□□□ 0.38
VAPB-202ENST00000395802 HYPKQ9NX55 129 aa17.41■□□□□ 0.38
VAPB-202ENST00000395802 TCERG1O14776 1098 aaKnown RBP17.4■□□□□ 0.38
VAPB-202ENST00000395802 TRIM27P14373 513 aa17.4■□□□□ 0.38
VAPB-202ENST00000395802 STARD3NLO95772 234 aa17.4■□□□□ 0.38
VAPB-202ENST00000395802 NECTIN2Q92692 538 aa17.4■□□□□ 0.38
VAPB-202ENST00000395802 DDX21Q9NR30 783 aaKnown RBP eCLIP17.4■□□□□ 0.38
VAPB-202ENST00000395802 PPP4R2Q9NY27 417 aa17.4■□□□□ 0.38
VAPB-202ENST00000395802 KCPQ6ZWJ8 1503 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms