RNA–Protein interactions for RNA: ENST00000390612.3

IGHV4-28-201, Transcript of immunoglobulin heavy variable 4-28, humanhuman

APPRIS P1 BASIC

Gene IGHV4-28, Length 425 nt, Biotype IG V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV4-28-201ENST00000390612 MRC1P22897 1456 aa15.32■□□□□ 0.04
IGHV4-28-201ENST00000390612 COL5A3P25940 1745 aaPredicted RBP15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 U2SURPO15042 1029 aaKnown RBP15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 DDX10Q13206 875 aaKnown RBP15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 SLC4A9Q96Q91 983 aa15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 RSPH6AQ9H0K4 717 aa15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 LGR6Q9HBX8 967 aa15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 TFCP2L1Q9NZI6 479 aa15.31■□□□□ 0.04
IGHV4-28-201ENST00000390612 SIPA1L3O60292 1781 aaPredicted RBP15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 CABP4P57796 275 aa15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 ITPK1Q13572 414 aa15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 NFATC2IPQ8NCF5 419 aa15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 CICQ96RK0 1608 aaPredicted RBP15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 ATF5Q9Y2D1 282 aaPredicted RBP15.3■□□□□ 0.04
IGHV4-28-201ENST00000390612 RNMTO43148 476 aaKnown RBP15.29■□□□□ 0.04
IGHV4-28-201ENST00000390612 COL23A1Q86Y22 540 aaPredicted RBP15.29■□□□□ 0.04
IGHV4-28-201ENST00000390612 LINC00116Q8NCU8 138 aa15.29■□□□□ 0.04
IGHV4-28-201ENST00000390612 NUDCQ9Y266 331 aa15.29■□□□□ 0.04
IGHV4-28-201ENST00000390612 AMIGO3Q86WK7 504 aa15.28■□□□□ 0.04
IGHV4-28-201ENST00000390612 PHACTR3Q96KR7 559 aa15.28■□□□□ 0.04
IGHV4-28-201ENST00000390612 SLC52A2Q9HAB3 445 aa15.28■□□□□ 0.04
IGHV4-28-201ENST00000390612 FCHSD2O94868 740 aa15.27■□□□□ 0.04
IGHV4-28-201ENST00000390612 ATP6V1AP38606 617 aa15.27■□□□□ 0.04
IGHV4-28-201ENST00000390612 RALBP1Q15311 655 aa15.27■□□□□ 0.04
IGHV4-28-201ENST00000390612 GAS2L2Q8NHY3 880 aa15.27■□□□□ 0.04
IGHV4-28-201ENST00000390612 UBR2Q8IWV8 1755 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 DLG5Q8TDM6 1919 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 PRKAR2BP31323 418 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 FLAD1Q8NFF5 587 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 IL17REQ8NFR9 667 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 TJP1Q07157 1748 aa15.26■□□□□ 0.03
IGHV4-28-201ENST00000390612 U2AF1L5P0DN76 240 aaPredicted RBP15.25■□□□□ 0.03
IGHV4-28-201ENST00000390612 U2AF1Q01081 240 aaKnown RBP eCLIP15.25■□□□□ 0.03
IGHV4-28-201ENST00000390612 RC3H1Q5TC82 1133 aaKnown RBP15.25■□□□□ 0.03
IGHV4-28-201ENST00000390612 CEMIPQ8WUJ3 1361 aa15.24■□□□□ 0.03
IGHV4-28-201ENST00000390612 MAP3K5Q99683 1374 aa15.24■□□□□ 0.03
IGHV4-28-201ENST00000390612 GNAT3A8MTJ3 354 aa15.24■□□□□ 0.03
IGHV4-28-201ENST00000390612 AK7Q96M32 723 aa15.24■□□□□ 0.03
IGHV4-28-201ENST00000390612 PPP1R1BQ9UD71 204 aaPredicted RBP15.24■□□□□ 0.03
IGHV4-28-201ENST00000390612 KCPQ6ZWJ8 1503 aa15.23■□□□□ 0.03
IGHV4-28-201ENST00000390612 SSFA2P28290 1259 aa15.23■□□□□ 0.03
IGHV4-28-201ENST00000390612 RBM42Q9BTD8 480 aaKnown RBP15.23■□□□□ 0.03
IGHV4-28-201ENST00000390612 GOLGB1Q14789 3259 aaKnown RBP15.23■□□□□ 0.03
IGHV4-28-201ENST00000390612 UTRNP46939 3433 aa15.23■□□□□ 0.03
IGHV4-28-201ENST00000390612 CNTNAP4Q9C0A0 1308 aa15.22■□□□□ 0.03
IGHV4-28-201ENST00000390612 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.22■□□□□ 0.03
IGHV4-28-201ENST00000390612 PTCD1O75127 700 aaKnown RBP15.22■□□□□ 0.03
IGHV4-28-201ENST00000390612 ARXQ96QS3 562 aa15.22■□□□□ 0.03
IGHV4-28-201ENST00000390612 SMIM5Q71RC9 77 aa15.21■□□□□ 0.03
IGHV4-28-201ENST00000390612 PLEKHF1Q96S99 279 aa15.21■□□□□ 0.03
IGHV4-28-201ENST00000390612 SLC39A6Q13433 755 aa15.2■□□□□ 0.02
IGHV4-28-201ENST00000390612 SYT17Q9BSW7 474 aa15.2■□□□□ 0.02
IGHV4-28-201ENST00000390612 FHDC1Q9C0D6 1143 aaPredicted RBP15.2■□□□□ 0.02
IGHV4-28-201ENST00000390612 C4AP0C0L4 1744 aa15.2■□□□□ 0.02
IGHV4-28-201ENST00000390612 MYBBP1AQ9BQG0 1328 aaKnown RBP15.19■□□□□ 0.02
IGHV4-28-201ENST00000390612 GNPATO15228 680 aa15.19■□□□□ 0.02
IGHV4-28-201ENST00000390612 HTATSF1O43719 755 aaKnown RBP15.19■□□□□ 0.02
IGHV4-28-201ENST00000390612 RPS6KA4O75676 772 aa15.19■□□□□ 0.02
IGHV4-28-201ENST00000390612 MSH5O43196 834 aa15.18■□□□□ 0.02
IGHV4-28-201ENST00000390612 POLD1P28340 1107 aa15.18■□□□□ 0.02
IGHV4-28-201ENST00000390612 VSIG10Q8N0Z9 540 aa15.18■□□□□ 0.02
IGHV4-28-201ENST00000390612 PRKRIP1Q9H875 184 aaPredicted RBP15.18■□□□□ 0.02
IGHV4-28-201ENST00000390612 PHF14O94880 888 aa15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 ADRA2BP18089 450 aa15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 CRKLP46109 303 aaKnown RBP15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 TEFQ10587 303 aa15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 INTS5Q6P9B9 1019 aaKnown RBP15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 DNAJC10Q8IXB1 793 aa15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 RTCBQ9Y3I0 505 aaKnown RBP15.17■□□□□ 0.02
IGHV4-28-201ENST00000390612 CYP19A1P11511 503 aaPredicted RBP15.16■□□□□ 0.02
IGHV4-28-201ENST00000390612 ZNF790Q6PG37 636 aa15.16■□□□□ 0.02
IGHV4-28-201ENST00000390612 TRAPPC3LQ5T215 181 aa15.15■□□□□ 0.02
IGHV4-28-201ENST00000390612 MSL1Q68DK7 614 aa15.15■□□□□ 0.02
IGHV4-28-201ENST00000390612 ARHGEF1Q92888 912 aaKnown RBP15.15■□□□□ 0.02
IGHV4-28-201ENST00000390612 NFE2L2Q16236 605 aa15.14■□□□□ 0.01
IGHV4-28-201ENST00000390612 MCM10Q7L590 875 aa15.14■□□□□ 0.01
IGHV4-28-201ENST00000390612 ZNF496Q96IT1 587 aaPredicted RBP15.14■□□□□ 0.01
IGHV4-28-201ENST00000390612 HEG1Q9ULI3 1381 aa15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 KIF13BQ9NQT8 1826 aa15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 DCTN1Q14203 1278 aa15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 PNNQ9H307 717 aaKnown RBP15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 CCDC87Q9NVE4 849 aa15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 CHD4Q14839 1912 aa15.13■□□□□ 0.01
IGHV4-28-201ENST00000390612 ZNF316A6NFI3 1004 aaPredicted RBP15.12■□□□□ 0.01
IGHV4-28-201ENST00000390612 KCNQ3O43525 872 aa15.12■□□□□ 0.01
IGHV4-28-201ENST00000390612 RTF1Q92541 710 aaKnown RBP15.12■□□□□ 0.01
IGHV4-28-201ENST00000390612 SOS1Q07889 1333 aaPredicted RBP15.12■□□□□ 0.01
IGHV4-28-201ENST00000390612 KDM3BQ7LBC6 1761 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 BTBD11A6QL63 1104 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 GYS1P13807 737 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 TTC5Q8N0Z6 440 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 NLGN1Q8N2Q7 840 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 CD2APQ9Y5K6 639 aa15.11■□□□□ 0.01
IGHV4-28-201ENST00000390612 RFC4P35249 363 aa15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 TAF7Q15545 349 aaPredicted RBP15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 FMNL2Q96PY5 1086 aa15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 TEX13AQ9BXU3 409 aaPredicted RBP15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 ZBTB1Q9Y2K1 713 aa15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 USP42Q9H9J4 1324 aaKnown RBP15.1■□□□□ 0.01
IGHV4-28-201ENST00000390612 NEFMP07197 916 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms