RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 TSR2Q969E8 191 aaKnown RBP12.53□□□□□ -0.4
CLCN4-202ENST00000380833 NINLQ9Y2I6 1382 aa12.53□□□□□ -0.4
CLCN4-202ENST00000380833 LRP2BPQ9P2M1 347 aa12.52□□□□□ -0.4
CLCN4-202ENST00000380833 CCDC160A6NGH7 325 aa12.52□□□□□ -0.4
CLCN4-202ENST00000380833 CASQ1P31415 396 aa12.52□□□□□ -0.4
CLCN4-202ENST00000380833 ZBTB17Q13105 803 aa12.52□□□□□ -0.4
CLCN4-202ENST00000380833 GNAI1P63096 354 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC148Q8NFR7 591 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 V9GYY5 206 aaPredicted RBP12.52□□□□□ -0.41
CLCN4-202ENST00000380833 IDH1O75874 414 aaKnown RBP12.52□□□□□ -0.41
CLCN4-202ENST00000380833 CAPN2P17655 700 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 DMTNQ08495 405 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 FILIP1LQ4L180 1135 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 CRACR2BQ8N4Y2 399 aaPredicted RBP12.52□□□□□ -0.41
CLCN4-202ENST00000380833 RRS1Q15050 365 aaKnown RBP12.52□□□□□ -0.41
CLCN4-202ENST00000380833 STK38Q15208 465 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC57Q2TAC2 916 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 VTI1AQ96AJ9 217 aa12.52□□□□□ -0.41
CLCN4-202ENST00000380833 CBFA2T2O43439 604 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 RUNDC1Q96C34 613 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 EFCC1Q9HA90 598 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 PRKAR2BP31323 418 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 PRAM1Q96QH2 718 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 DNA2P51530 1060 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 SMC1AQ14683 1233 aaKnown RBP12.51□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC30Q5VVM6 783 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 ZNF530Q6P9A1 599 aaPredicted RBP12.51□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC82Q8N4S0 544 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 SH2D4BQ5SQS7 431 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 EBAG9O00559 213 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 USHBP1Q8N6Y0 703 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 KIF4AO95239 1232 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 SLC4A2P04920 1241 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC50Q8IVM0 306 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 OTUD6BQ8N6M0 293 aa12.51□□□□□ -0.41
CLCN4-202ENST00000380833 PRDM2Q13029 1718 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 SULT6B1Q6IMI4 303 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 NAP1L3Q99457 506 aaPredicted RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 FEZ2Q9UHY8 353 aaPredicted RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 SERPINC1P01008 464 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 ZNF397Q8NF99 534 aaPredicted RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 ZNF644Q9H582 1327 aaPredicted RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 USP47Q96K76 1375 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 DNAJC21Q5F1R6 531 aaKnown RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 NEK4P51957 841 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 HDGFL1Q5TGJ6 251 aa12.5□□□□□ -0.41
CLCN4-202ENST00000380833 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.5□□□□□ -0.41
CLCN4-202ENST00000380833 MINDY4BA8MYZ0 360 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 ROCK1Q13464 1354 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 UACAQ9BZF9 1416 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 DDX46Q7L014 1031 aaKnown RBP12.49□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC18Q5T9S5 1454 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 ZSCAN12O43309 604 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 MPRIPQ6WCQ1 1025 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 MRC2Q9UBG0 1479 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 PSMA5P28066 241 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 KINO60870 393 aaKnown RBP12.49□□□□□ -0.41
CLCN4-202ENST00000380833 PPP2R5AQ15172 486 aa12.49□□□□□ -0.41
CLCN4-202ENST00000380833 URI1O94763 535 aaPredicted RBP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 POTEDQ86YR6 584 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 ZPR1O75312 459 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 BCAR3O75815 825 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 CEP128Q6ZU80 1094 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 TMOD2Q9NZR1 351 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 POLR3DP05423 398 aaPredicted RBP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 TERF1P54274 439 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC6Q16204 474 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 CEP112Q8N8E3 955 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 C16orf45Q96MC5 204 aaPredicted RBP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 C6orf163Q5TEZ5 329 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 SMG6Q86US8 1419 aaKnown RBP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 PPFIBP1Q86W92 1011 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 LMNTD2Q8IXW0 634 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 PUS7Q96PZ0 661 aaKnown RBP12.48□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC121Q6ZUS5 278 aa12.48□□□□□ -0.41
CLCN4-202ENST00000380833 NEMFO60524 1076 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 NBPF11Q86T75 865 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 DHX57Q6P158 1386 aaKnown RBP12.47□□□□□ -0.41
CLCN4-202ENST00000380833 ME1P48163 572 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 AACSQ86V21 672 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 WHAMMP3Q1A5X7 153 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 CEP135Q66GS9 1140 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 TNMDQ9H2S6 317 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 IL1RAPL2Q9NP60 686 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC96Q2M329 555 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 SRRTQ9BXP5 876 aaKnown RBP12.47□□□□□ -0.41
CLCN4-202ENST00000380833 BTBD11A6QL63 1104 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 MRFAP1L1Q96HT8 127 aa12.47□□□□□ -0.41
CLCN4-202ENST00000380833 MACROD2A1Z1Q3 448 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 KLHL10Q6JEL2 608 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 NGLY1Q96IV0 654 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 NOB1Q9ULX3 412 aaKnown RBP12.46□□□□□ -0.41
CLCN4-202ENST00000380833 COMMD10Q9Y6G5 202 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 CCDC172P0C7W6 258 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 HYPKQ9NX55 129 aa12.46□□□□□ -0.41
CLCN4-202ENST00000380833 PPFIA3O75145 1194 aa12.46□□□□□ -0.42
CLCN4-202ENST00000380833 EXOSC9Q06265 439 aaKnown RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms