RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 C1orf141Q5JVX7 400 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 MON2Q7Z3U7 1717 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 AIMP1Q12904 312 aaKnown RBP13.47□□□□□ -0.25
NEDD9-201ENST00000379433 TSHZ3Q63HK5 1081 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 SIRT2Q8IXJ6 389 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 SSH2Q76I76 1423 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 SLC39A6Q13433 755 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 PLCD3Q8N3E9 789 aa13.47□□□□□ -0.25
NEDD9-201ENST00000379433 PRAMEF22A3QJZ6 481 aa13.46□□□□□ -0.25
NEDD9-201ENST00000379433 CWC22Q9HCG8 908 aaKnown RBP13.46□□□□□ -0.25
NEDD9-201ENST00000379433 PEAK1Q9H792 1746 aa13.46□□□□□ -0.25
NEDD9-201ENST00000379433 GTF2E1P29083 439 aaPredicted RBP13.46□□□□□ -0.25
NEDD9-201ENST00000379433 CHD1LQ86WJ1 897 aa13.46□□□□□ -0.25
NEDD9-201ENST00000379433 KCNH5Q8NCM2 988 aa13.46□□□□□ -0.25
NEDD9-201ENST00000379433 KNDC1Q76NI1 1749 aa13.46□□□□□ -0.26
NEDD9-201ENST00000379433 TAF7Q15545 349 aaPredicted RBP13.46□□□□□ -0.26
NEDD9-201ENST00000379433 BTBD11A6QL63 1104 aa13.45□□□□□ -0.26
NEDD9-201ENST00000379433 CLSTN1O94985 981 aa13.45□□□□□ -0.26
NEDD9-201ENST00000379433 OTUD7AQ8TE49 926 aaPredicted RBP13.45□□□□□ -0.26
NEDD9-201ENST00000379433 STRN4Q9NRL3 753 aa13.45□□□□□ -0.26
NEDD9-201ENST00000379433 EXOC6BQ9Y2D4 811 aa13.45□□□□□ -0.26
NEDD9-201ENST00000379433 KAT6BQ8WYB5 2073 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 AKAP12Q02952 1782 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 FLIIQ13045 1269 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 PLCD4Q9BRC7 762 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 ARHGEF10O15013 1369 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 MSH6P52701 1360 aa13.44□□□□□ -0.26
NEDD9-201ENST00000379433 FAM43BQ6ZT52 329 aaPredicted RBP13.44□□□□□ -0.26
NEDD9-201ENST00000379433 HDAC1Q13547 482 aaPredicted RBP13.43□□□□□ -0.26
NEDD9-201ENST00000379433 RAPGEF4Q8WZA2 1011 aa13.43□□□□□ -0.26
NEDD9-201ENST00000379433 DDRGK1Q96HY6 314 aa13.43□□□□□ -0.26
NEDD9-201ENST00000379433 ADGRL3Q9HAR2 1447 aa13.43□□□□□ -0.26
NEDD9-201ENST00000379433 ZNF335Q9H4Z2 1342 aaPredicted RBP13.43□□□□□ -0.26
NEDD9-201ENST00000379433 PIK3R4Q99570 1358 aa13.43□□□□□ -0.26
NEDD9-201ENST00000379433 FOXD4L1Q9NU39 408 aa13.42□□□□□ -0.26
NEDD9-201ENST00000379433 CHPF2Q9P2E5 772 aa13.42□□□□□ -0.26
NEDD9-201ENST00000379433 CCDC30Q5VVM6 783 aa13.42□□□□□ -0.26
NEDD9-201ENST00000379433 ARHGEF25Q86VW2 580 aa13.42□□□□□ -0.26
NEDD9-201ENST00000379433 MAP3K5Q99683 1374 aa13.42□□□□□ -0.26
NEDD9-201ENST00000379433 PLEKHO1Q53GL0 409 aaPredicted RBP13.42□□□□□ -0.26
NEDD9-201ENST00000379433 ZNF330Q9Y3S2 320 aaPredicted RBP13.42□□□□□ -0.26
NEDD9-201ENST00000379433 MYL6BP14649 208 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 SMC5Q8IY18 1101 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 USP19O94966 1318 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 PIK3C2AO00443 1686 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 ABCC4O15439 1325 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 NUCB1Q02818 461 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 ARHGAP45Q92619 1136 aa13.41□□□□□ -0.26
NEDD9-201ENST00000379433 ANKARQ7Z5J8 1434 aa13.4□□□□□ -0.26
NEDD9-201ENST00000379433 JARID2Q92833 1246 aaPredicted RBP13.4□□□□□ -0.26
NEDD9-201ENST00000379433 CRB1P82279 1406 aa13.4□□□□□ -0.26
NEDD9-201ENST00000379433 CERS3Q8IU89 383 aa13.4□□□□□ -0.26
NEDD9-201ENST00000379433 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
NEDD9-201ENST00000379433 PRDM11Q9NQV5 511 aa13.39□□□□□ -0.27
NEDD9-201ENST00000379433 PI4KAP2A4QPH2 592 aa13.39□□□□□ -0.27
NEDD9-201ENST00000379433 PI4KAP1Q8N8J0 262 aa13.39□□□□□ -0.27
NEDD9-201ENST00000379433 NFATC2IPQ8NCF5 419 aa13.39□□□□□ -0.27
NEDD9-201ENST00000379433 IL1RAPL2Q9NP60 686 aa13.39□□□□□ -0.27
NEDD9-201ENST00000379433 LRRFIP2Q9Y608 721 aaKnown RBP13.39□□□□□ -0.27
NEDD9-201ENST00000379433 NALCNQ8IZF0 1738 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 CADPS2Q86UW7 1296 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 PTMSP20962 102 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 C22orf23Q9BZE7 217 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 PROSER3Q2NL68 480 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 CEP85Q6P2H3 762 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 TOM1L2Q6ZVM7 507 aa13.38□□□□□ -0.27
NEDD9-201ENST00000379433 RNF216Q9NWF9 866 aaPredicted RBP13.38□□□□□ -0.27
NEDD9-201ENST00000379433 KDRP35968 1356 aa13.37□□□□□ -0.27
NEDD9-201ENST00000379433 XRN1Q8IZH2 1706 aaKnown RBP13.37□□□□□ -0.27
NEDD9-201ENST00000379433 PNMA6EA0A0J9YXQ4 647 aa13.36□□□□□ -0.27
NEDD9-201ENST00000379433 MAP4K4O95819 1239 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-201ENST00000379433 TOPAZ1Q8N9V7 1692 aa13.36□□□□□ -0.27
NEDD9-201ENST00000379433 CHRM1P11229 460 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-201ENST00000379433 OS9Q13438 667 aaPredicted RBP13.36□□□□□ -0.27
NEDD9-201ENST00000379433 INTS3Q68E01 1043 aaKnown RBP13.36□□□□□ -0.27
NEDD9-201ENST00000379433 C1orf167Q5SNV9 1468 aa13.36□□□□□ -0.27
NEDD9-201ENST00000379433 NRKQ7Z2Y5 1582 aa13.36□□□□□ -0.27
NEDD9-201ENST00000379433 GCC1Q96CN9 775 aa13.36□□□□□ -0.27
NEDD9-201ENST00000379433 RNMTO43148 476 aaKnown RBP13.35□□□□□ -0.27
NEDD9-201ENST00000379433 KDM4FA0A1W2PPD8 638 aa13.35□□□□□ -0.27
NEDD9-201ENST00000379433 PTCD1O75127 700 aaKnown RBP13.35□□□□□ -0.27
NEDD9-201ENST00000379433 UBTFL1P0CB47 393 aaPredicted RBP13.35□□□□□ -0.27
NEDD9-201ENST00000379433 CWF19L2Q2TBE0 894 aaKnown RBP13.35□□□□□ -0.27
NEDD9-201ENST00000379433 AKAP4Q5JQC9 854 aa13.35□□□□□ -0.27
NEDD9-201ENST00000379433 GNAI2P04899 355 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 TATP17735 454 aaPredicted RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 EVA1CP58658 441 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 EIF4A1P60842 406 aaKnown RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 HSP90AA2PQ14568 343 aaPredicted RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 ERBB3P21860 1342 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 KIAA0232Q92628 1395 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 TRIM6-TRIM34B2RNG4 842 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 NBPF7P0C2Y1 421 aaPredicted RBP13.34□□□□□ -0.27
NEDD9-201ENST00000379433 FAM193AP78312 1265 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 RILPL2Q969X0 211 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 PRDM16Q9HAZ2 1276 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 PTPRCP08575 1304 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 NPHP3Q7Z494 1330 aa13.34□□□□□ -0.27
NEDD9-201ENST00000379433 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms