RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 ATG3Q9NT62 314 aa24.6■■□□□ 1.53
PDLIM4-202ENST00000379018 RBM42Q9BTD8 480 aaKnown RBP24.59■■□□□ 1.53
PDLIM4-202ENST00000379018 POLKQ9UBT6 870 aa24.59■■□□□ 1.53
PDLIM4-202ENST00000379018 N4BP2Q86UW6 1770 aaPredicted RBP24.58■■□□□ 1.53
PDLIM4-202ENST00000379018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.58■■□□□ 1.53
PDLIM4-202ENST00000379018 CICQ96RK0 1608 aaPredicted RBP24.57■■□□□ 1.52
PDLIM4-202ENST00000379018 EIF4A2Q14240 407 aaKnown RBP24.57■■□□□ 1.52
PDLIM4-202ENST00000379018 BCS1LQ9Y276 419 aa24.57■■□□□ 1.52
PDLIM4-202ENST00000379018 RTCBQ9Y3I0 505 aaKnown RBP24.56■■□□□ 1.52
PDLIM4-202ENST00000379018 PXDNLA1KZ92 1463 aa24.56■■□□□ 1.52
PDLIM4-202ENST00000379018 TRAPPC3LQ5T215 181 aa24.55■■□□□ 1.52
PDLIM4-202ENST00000379018 A0A0G2JLW4 131 aa24.54■■□□□ 1.52
PDLIM4-202ENST00000379018 KIF3CO14782 793 aa24.53■■□□□ 1.52
PDLIM4-202ENST00000379018 KDRP35968 1356 aa24.53■■□□□ 1.52
PDLIM4-202ENST00000379018 SLC4A9Q96Q91 983 aa24.52■■□□□ 1.52
PDLIM4-202ENST00000379018 KIAA1551Q9HCM1 1747 aa24.51■■□□□ 1.51
PDLIM4-202ENST00000379018 KIF13BQ9NQT8 1826 aa24.5■■□□□ 1.51
PDLIM4-202ENST00000379018 ARHGAP27Q6ZUM4 889 aa24.5■■□□□ 1.51
PDLIM4-202ENST00000379018 ARHGEF1Q92888 912 aaKnown RBP24.5■■□□□ 1.51
PDLIM4-202ENST00000379018 RFC4P35249 363 aa24.49■■□□□ 1.51
PDLIM4-202ENST00000379018 ZNF530Q6P9A1 599 aaPredicted RBP24.49■■□□□ 1.51
PDLIM4-202ENST00000379018 NLGN1Q8N2Q7 840 aa24.49■■□□□ 1.51
PDLIM4-202ENST00000379018 CCDC87Q9NVE4 849 aa24.49■■□□□ 1.51
PDLIM4-202ENST00000379018 C10orf71Q711Q0 1435 aa24.49■■□□□ 1.51
PDLIM4-202ENST00000379018 FCHSD2O94868 740 aa24.48■■□□□ 1.51
PDLIM4-202ENST00000379018 DPEP1P16444 411 aa24.48■■□□□ 1.51
PDLIM4-202ENST00000379018 CABP4P57796 275 aa24.48■■□□□ 1.51
PDLIM4-202ENST00000379018 C4AP0C0L4 1744 aa24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 COL5A3P25940 1745 aaPredicted RBP24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 ERVV-2B6SEH9 535 aa24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 HSP90AB1P08238 724 aaKnown RBP24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 TGFB2P61812 414 aa24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 PLEKHO1Q53GL0 409 aaPredicted RBP24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 DCAF5Q96JK2 942 aa24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 PARP3Q9Y6F1 533 aa24.47■■□□□ 1.51
PDLIM4-202ENST00000379018 PTCD1O75127 700 aaKnown RBP24.46■■□□□ 1.51
PDLIM4-202ENST00000379018 GYS1P13807 737 aa24.46■■□□□ 1.51
PDLIM4-202ENST00000379018 KDM6AO15550 1401 aaPredicted RBP24.45■■□□□ 1.51
PDLIM4-202ENST00000379018 CNTNAP4Q9C0A0 1308 aa24.45■■□□□ 1.5
PDLIM4-202ENST00000379018 MYH14Q7Z406 1995 aaKnown RBP24.44■■□□□ 1.5
PDLIM4-202ENST00000379018 ADRA2BP18089 450 aa24.44■■□□□ 1.5
PDLIM4-202ENST00000379018 RPS6KA4O75676 772 aa24.43■■□□□ 1.5
PDLIM4-202ENST00000379018 TRIM26Q12899 539 aaPredicted RBP24.43■■□□□ 1.5
PDLIM4-202ENST00000379018 RC3H1Q5TC82 1133 aaKnown RBP24.43■■□□□ 1.5
PDLIM4-202ENST00000379018 AEBP1Q8IUX7 1158 aa24.43■■□□□ 1.5
PDLIM4-202ENST00000379018 NMRK2Q9NPI5 230 aa24.43■■□□□ 1.5
PDLIM4-202ENST00000379018 MTHFSP49914 203 aa24.42■■□□□ 1.5
PDLIM4-202ENST00000379018 C1orf141Q5JVX7 400 aa24.42■■□□□ 1.5
PDLIM4-202ENST00000379018 SRP68Q9UHB9 627 aaKnown RBP24.42■■□□□ 1.5
PDLIM4-202ENST00000379018 ZNF831Q5JPB2 1677 aa24.41■■□□□ 1.5
PDLIM4-202ENST00000379018 CRKLP46109 303 aaKnown RBP24.4■■□□□ 1.5
PDLIM4-202ENST00000379018 APLP1P51693 650 aa24.4■■□□□ 1.5
PDLIM4-202ENST00000379018 PANK3Q9H999 370 aa24.4■■□□□ 1.5
PDLIM4-202ENST00000379018 BRCA1P38398 1863 aaKnown RBP24.4■■□□□ 1.5
PDLIM4-202ENST00000379018 TOMM70O94826 608 aa24.39■■□□□ 1.49
PDLIM4-202ENST00000379018 AMOTQ4VCS5 1084 aa24.39■■□□□ 1.49
PDLIM4-202ENST00000379018 C9orf131Q5VYM1 1079 aa24.39■■□□□ 1.49
PDLIM4-202ENST00000379018 PLEKHG2Q9H7P9 1386 aa24.39■■□□□ 1.49
PDLIM4-202ENST00000379018 FKBP8Q14318 412 aa24.37■■□□□ 1.49
PDLIM4-202ENST00000379018 NFATC2IPQ8NCF5 419 aa24.37■■□□□ 1.49
PDLIM4-202ENST00000379018 MORC1Q86VD1 984 aa24.36■■□□□ 1.49
PDLIM4-202ENST00000379018 C16orf71Q8IYS4 520 aaPredicted RBP24.36■■□□□ 1.49
PDLIM4-202ENST00000379018 ARFGEF1Q9Y6D6 1849 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 KCNA3P22001 575 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 DDR1Q08345 913 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 SULT6B1Q6IMI4 303 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 PCGF6Q9BYE7 350 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 PIM2Q9P1W9 311 aa24.35■■□□□ 1.49
PDLIM4-202ENST00000379018 CHRNA5P30532 468 aa24.34■■□□□ 1.49
PDLIM4-202ENST00000379018 DALRD3Q5D0E6 543 aaKnown RBP24.34■■□□□ 1.49
PDLIM4-202ENST00000379018 TJP1Q07157 1748 aa24.34■■□□□ 1.49
PDLIM4-202ENST00000379018 USP42Q9H9J4 1324 aaKnown RBP24.34■■□□□ 1.49
PDLIM4-202ENST00000379018 HSPA5P11021 654 aaKnown RBP24.33■■□□□ 1.49
PDLIM4-202ENST00000379018 RNF181Q9P0P0 153 aa24.33■■□□□ 1.49
PDLIM4-202ENST00000379018 KCPQ6ZWJ8 1503 aa24.31■■□□□ 1.48
PDLIM4-202ENST00000379018 EIF4G2P78344 907 aaKnown RBP eCLIP24.31■■□□□ 1.48
PDLIM4-202ENST00000379018 HTRA3P83110 453 aa24.31■■□□□ 1.48
PDLIM4-202ENST00000379018 TIMELESSQ9UNS1 1208 aa24.31■■□□□ 1.48
PDLIM4-202ENST00000379018 WDR90Q96KV7 1748 aa24.3■■□□□ 1.48
PDLIM4-202ENST00000379018 SCN11AQ9UI33 1791 aa24.29■■□□□ 1.48
PDLIM4-202ENST00000379018 DNAJC10Q8IXB1 793 aa24.29■■□□□ 1.48
PDLIM4-202ENST00000379018 ZPR1O75312 459 aa24.28■■□□□ 1.48
PDLIM4-202ENST00000379018 USPL1Q5W0Q7 1092 aa24.28■■□□□ 1.48
PDLIM4-202ENST00000379018 RBM46Q8TBY0 533 aaKnown RBP24.28■■□□□ 1.48
PDLIM4-202ENST00000379018 POLRMTO00411 1230 aaKnown RBP24.27■■□□□ 1.48
PDLIM4-202ENST00000379018 INTS5Q6P9B9 1019 aaKnown RBP24.27■■□□□ 1.48
PDLIM4-202ENST00000379018 DNAJC5GQ8N7S2 189 aa24.27■■□□□ 1.48
PDLIM4-202ENST00000379018 SLC39A6Q13433 755 aa24.26■■□□□ 1.47
PDLIM4-202ENST00000379018 RRAGCQ9HB90 399 aa24.26■■□□□ 1.47
PDLIM4-202ENST00000379018 KDM2BQ8NHM5 1336 aa24.26■■□□□ 1.47
PDLIM4-202ENST00000379018 RASSF7Q02833 373 aa24.25■■□□□ 1.47
PDLIM4-202ENST00000379018 KNSTRNQ9Y448 316 aa24.25■■□□□ 1.47
PDLIM4-202ENST00000379018 IL13P35225 146 aa24.24■■□□□ 1.47
PDLIM4-202ENST00000379018 SLC52A2Q9HAB3 445 aa24.24■■□□□ 1.47
PDLIM4-202ENST00000379018 LGR6Q9HBX8 967 aa24.24■■□□□ 1.47
PDLIM4-202ENST00000379018 ADAMTS7Q9UKP4 1686 aa24.24■■□□□ 1.47
PDLIM4-202ENST00000379018 HMOX1P09601 288 aa24.23■■□□□ 1.47
PDLIM4-202ENST00000379018 AKAP4Q5JQC9 854 aa24.23■■□□□ 1.47
PDLIM4-202ENST00000379018 SBF1O95248 1867 aa24.23■■□□□ 1.47
PDLIM4-202ENST00000379018 VIRMAQ69YN4 1812 aaKnown RBP24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms