RNA–Protein interactions for RNA: ENST00000377808.8

SMARCE1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-203ENST00000377808 KLHL34Q8N239 644 aa15.5■□□□□ 0.07
SMARCE1-203ENST00000377808 NFATC2IPQ8NCF5 419 aa15.5■□□□□ 0.07
SMARCE1-203ENST00000377808 C4BP0C0L5 1744 aa15.5■□□□□ 0.07
SMARCE1-203ENST00000377808 QSER1Q2KHR3 1735 aa15.5■□□□□ 0.07
SMARCE1-203ENST00000377808 U2AF1L5P0DN76 240 aaPredicted RBP15.49■□□□□ 0.07
SMARCE1-203ENST00000377808 POLD1P28340 1107 aa15.49■□□□□ 0.07
SMARCE1-203ENST00000377808 U2AF1Q01081 240 aaKnown RBP eCLIP15.49■□□□□ 0.07
SMARCE1-203ENST00000377808 LINC00116Q8NCU8 138 aa15.49■□□□□ 0.07
SMARCE1-203ENST00000377808 TAF1LQ8IZX4 1826 aa15.49■□□□□ 0.07
SMARCE1-203ENST00000377808 PTCD1O75127 700 aaKnown RBP15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 MSL1Q68DK7 614 aa15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 COL23A1Q86Y22 540 aaPredicted RBP15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 SLC16A10Q8TF71 515 aa15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 ARXQ96QS3 562 aa15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 LGR6Q9HBX8 967 aa15.48■□□□□ 0.07
SMARCE1-203ENST00000377808 GNPATO15228 680 aa15.47■□□□□ 0.07
SMARCE1-203ENST00000377808 RNMTO43148 476 aaKnown RBP15.47■□□□□ 0.07
SMARCE1-203ENST00000377808 PRKAR2BP31323 418 aa15.47■□□□□ 0.07
SMARCE1-203ENST00000377808 ITPK1Q13572 414 aa15.47■□□□□ 0.07
SMARCE1-203ENST00000377808 GAS2L2Q8NHY3 880 aa15.47■□□□□ 0.07
SMARCE1-203ENST00000377808 ZEB1P37275 1124 aaPredicted RBP15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 SMIM5Q71RC9 77 aa15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 FLAD1Q8NFF5 587 aa15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 FHDC1Q9C0D6 1143 aaPredicted RBP15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 SLC52A2Q9HAB3 445 aa15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 SCN11AQ9UI33 1791 aa15.46■□□□□ 0.07
SMARCE1-203ENST00000377808 MAP3K5Q99683 1374 aa15.45■□□□□ 0.06
SMARCE1-203ENST00000377808 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.45■□□□□ 0.06
SMARCE1-203ENST00000377808 DCAF8L1A6NGE4 600 aa15.45■□□□□ 0.06
SMARCE1-203ENST00000377808 SGIP1Q9BQI5 828 aa15.45■□□□□ 0.06
SMARCE1-203ENST00000377808 AMIGO3Q86WK7 504 aa15.44■□□□□ 0.06
SMARCE1-203ENST00000377808 RSPH6AQ9H0K4 717 aa15.44■□□□□ 0.06
SMARCE1-203ENST00000377808 GNAT3A8MTJ3 354 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 SLC39A6Q13433 755 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 SLC4A9Q96Q91 983 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 NEFMP07197 916 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 SSFA2P28290 1259 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 TEFQ10587 303 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 PHACTR3Q96KR7 559 aa15.43■□□□□ 0.06
SMARCE1-203ENST00000377808 VIRMAQ69YN4 1812 aaKnown RBP15.42■□□□□ 0.06
SMARCE1-203ENST00000377808 UBR3Q6ZT12 1888 aa15.42■□□□□ 0.06
SMARCE1-203ENST00000377808 RALBP1Q15311 655 aa15.42■□□□□ 0.06
SMARCE1-203ENST00000377808 SYT17Q9BSW7 474 aa15.42■□□□□ 0.06
SMARCE1-203ENST00000377808 RTCBQ9Y3I0 505 aaKnown RBP15.42■□□□□ 0.06
SMARCE1-203ENST00000377808 MRC1P22897 1456 aa15.41■□□□□ 0.06
SMARCE1-203ENST00000377808 FCHSD2O94868 740 aa15.41■□□□□ 0.06
SMARCE1-203ENST00000377808 TTC5Q8N0Z6 440 aa15.41■□□□□ 0.06
SMARCE1-203ENST00000377808 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
SMARCE1-203ENST00000377808 RTF1Q92541 710 aaKnown RBP15.4■□□□□ 0.06
SMARCE1-203ENST00000377808 CNTNAP4Q9C0A0 1308 aa15.39■□□□□ 0.05
SMARCE1-203ENST00000377808 IL17REQ8NFR9 667 aa15.39■□□□□ 0.05
SMARCE1-203ENST00000377808 COL5A3P25940 1745 aaPredicted RBP15.38■□□□□ 0.05
SMARCE1-203ENST00000377808 CRKLP46109 303 aaKnown RBP15.38■□□□□ 0.05
SMARCE1-203ENST00000377808 DNAJC10Q8IXB1 793 aa15.38■□□□□ 0.05
SMARCE1-203ENST00000377808 PELP1Q8IZL8 1130 aaKnown RBP15.38■□□□□ 0.05
SMARCE1-203ENST00000377808 ZNF831Q5JPB2 1677 aa15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 ADAMTS7Q9UKP4 1686 aa15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 MYBBP1AQ9BQG0 1328 aaKnown RBP15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 TJP1Q07157 1748 aa15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 RFC4P35249 363 aa15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 RC3H1Q5TC82 1133 aaKnown RBP15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 MCM10Q7L590 875 aa15.37■□□□□ 0.05
SMARCE1-203ENST00000377808 MAPK8IP3Q9UPT6 1336 aa15.36■□□□□ 0.05
SMARCE1-203ENST00000377808 BTBD11A6QL63 1104 aa15.36■□□□□ 0.05
SMARCE1-203ENST00000377808 RPS6KA4O75676 772 aa15.36■□□□□ 0.05
SMARCE1-203ENST00000377808 COL24A1Q17RW2 1714 aa15.36■□□□□ 0.05
SMARCE1-203ENST00000377808 KCPQ6ZWJ8 1503 aa15.35■□□□□ 0.05
SMARCE1-203ENST00000377808 ADRA2BP18089 450 aa15.35■□□□□ 0.05
SMARCE1-203ENST00000377808 DCTN1Q14203 1278 aa15.35■□□□□ 0.05
SMARCE1-203ENST00000377808 ARHGEF1Q92888 912 aaKnown RBP15.35■□□□□ 0.05
SMARCE1-203ENST00000377808 GPR162Q16538 588 aa15.34■□□□□ 0.05
SMARCE1-203ENST00000377808 ZNF790Q6PG37 636 aa15.34■□□□□ 0.05
SMARCE1-203ENST00000377808 NLGN2Q8NFZ4 835 aa15.34■□□□□ 0.05
SMARCE1-203ENST00000377808 PNNQ9H307 717 aaKnown RBP15.34■□□□□ 0.05
SMARCE1-203ENST00000377808 CCDC87Q9NVE4 849 aa15.34■□□□□ 0.05
SMARCE1-203ENST00000377808 CEMIPQ8WUJ3 1361 aa15.33■□□□□ 0.04
SMARCE1-203ENST00000377808 MYH14Q7Z406 1995 aaKnown RBP15.33■□□□□ 0.04
SMARCE1-203ENST00000377808 MMP10P09238 476 aa15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 CYP19A1P11511 503 aaPredicted RBP15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 INTS5Q6P9B9 1019 aaKnown RBP15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 VSIG10Q8N0Z9 540 aa15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 FMNL2Q96PY5 1086 aa15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
SMARCE1-203ENST00000377808 CICQ96RK0 1608 aaPredicted RBP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 UBR2Q8IWV8 1755 aa15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 CANXP27824 592 aaKnown RBP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 WDR43Q15061 677 aaKnown RBP eCLIP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 ZNF496Q96IT1 587 aaPredicted RBP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 ZBTB1Q9Y2K1 713 aa15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 ZNF330Q9Y3S2 320 aaPredicted RBP15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 C4AP0C0L4 1744 aa15.31■□□□□ 0.04
SMARCE1-203ENST00000377808 HEG1Q9ULI3 1381 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 KCNQ3O43525 872 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 HTATSF1O43719 755 aaKnown RBP15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 ZPR1O75312 459 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 STARD3NLO95772 234 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 GYS1P13807 737 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 YY1P25490 414 aa15.3■□□□□ 0.04
SMARCE1-203ENST00000377808 NFE2L2Q16236 605 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms