RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 SLC4A9Q96Q91 983 aa16.31■□□□□ 0.2
VRK3-202ENST00000377011 CCNL1Q9UK58 526 aaPredicted RBP16.31■□□□□ 0.2
VRK3-202ENST00000377011 PRKAR2BP31323 418 aa16.3■□□□□ 0.2
VRK3-202ENST00000377011 TMOD3Q9NYL9 352 aa16.3■□□□□ 0.2
VRK3-202ENST00000377011 PLEKHG2Q9H7P9 1386 aa16.29■□□□□ 0.2
VRK3-202ENST00000377011 DCAF5Q96JK2 942 aa16.29■□□□□ 0.2
VRK3-202ENST00000377011 C5P01031 1676 aa16.29■□□□□ 0.2
VRK3-202ENST00000377011 RNF123Q5XPI4 1314 aa16.29■□□□□ 0.2
VRK3-202ENST00000377011 U2AF1L5P0DN76 240 aaPredicted RBP16.28■□□□□ 0.2
VRK3-202ENST00000377011 U2AF1Q01081 240 aaKnown RBP eCLIP16.28■□□□□ 0.2
VRK3-202ENST00000377011 NFATC2IPQ8NCF5 419 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 CFAP53Q96M91 514 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 STK32BQ9NY57 414 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 LRP5O75197 1615 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 ADAMTS7Q9UKP4 1686 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 ZBTB7AO95365 584 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 ITPK1Q13572 414 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 AKAP4Q5JQC9 854 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 C1orf141Q5JVX7 400 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 SLC27A3Q5K4L6 730 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 NUDCQ9Y266 331 aa16.28■□□□□ 0.2
VRK3-202ENST00000377011 MYBBP1AQ9BQG0 1328 aaKnown RBP16.27■□□□□ 0.2
VRK3-202ENST00000377011 FANCIQ9NVI1 1328 aa16.27■□□□□ 0.2
VRK3-202ENST00000377011 PNISRQ8TF01 805 aaKnown RBP16.27■□□□□ 0.19
VRK3-202ENST00000377011 ERVV-2B6SEH9 535 aa16.26■□□□□ 0.19
VRK3-202ENST00000377011 RNMTO43148 476 aaKnown RBP16.26■□□□□ 0.19
VRK3-202ENST00000377011 LINC00116Q8NCU8 138 aa16.26■□□□□ 0.19
VRK3-202ENST00000377011 PNPLA7Q6ZV29 1317 aa16.26■□□□□ 0.19
VRK3-202ENST00000377011 UTRNP46939 3433 aa16.26■□□□□ 0.19
VRK3-202ENST00000377011 LOC102724428A0A0B4J2F2 783 aa16.25■□□□□ 0.19
VRK3-202ENST00000377011 SIK1P57059 783 aa16.25■□□□□ 0.19
VRK3-202ENST00000377011 CABP4P57796 275 aa16.25■□□□□ 0.19
VRK3-202ENST00000377011 IL17REQ8NFR9 667 aa16.25■□□□□ 0.19
VRK3-202ENST00000377011 GOLGB1Q14789 3259 aaKnown RBP16.25■□□□□ 0.19
VRK3-202ENST00000377011 SLC39A6Q13433 755 aa16.25■□□□□ 0.19
VRK3-202ENST00000377011 ATF5Q9Y2D1 282 aaPredicted RBP16.25■□□□□ 0.19
VRK3-202ENST00000377011 C4BP0C0L5 1744 aa16.24■□□□□ 0.19
VRK3-202ENST00000377011 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
VRK3-202ENST00000377011 MRC1P22897 1456 aa16.23■□□□□ 0.19
VRK3-202ENST00000377011 PLEKHF1Q96S99 279 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 SLC52A2Q9HAB3 445 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 QSER1Q2KHR3 1735 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 PTCD1O75127 700 aaKnown RBP16.22■□□□□ 0.19
VRK3-202ENST00000377011 PTGER2P43116 358 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 IRX6P78412 446 aaPredicted RBP16.22■□□□□ 0.19
VRK3-202ENST00000377011 DCTN1Q14203 1278 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 COL23A1Q86Y22 540 aaPredicted RBP16.22■□□□□ 0.19
VRK3-202ENST00000377011 SMARCC1Q92922 1105 aaPredicted RBP16.22■□□□□ 0.19
VRK3-202ENST00000377011 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
VRK3-202ENST00000377011 MAP3K5Q99683 1374 aa16.22■□□□□ 0.19
VRK3-202ENST00000377011 SIPA1L3O60292 1781 aaPredicted RBP16.21■□□□□ 0.19
VRK3-202ENST00000377011 ATP6V1AP38606 617 aa16.21■□□□□ 0.19
VRK3-202ENST00000377011 UBR3Q6ZT12 1888 aa16.21■□□□□ 0.19
VRK3-202ENST00000377011 MYH14Q7Z406 1995 aaKnown RBP16.21■□□□□ 0.19
VRK3-202ENST00000377011 DLG5Q8TDM6 1919 aa16.21■□□□□ 0.19
VRK3-202ENST00000377011 TFCP2L1Q9NZI6 479 aa16.21■□□□□ 0.19
VRK3-202ENST00000377011 TJP1Q07157 1748 aa16.2■□□□□ 0.18
VRK3-202ENST00000377011 FCHSD2O94868 740 aa16.2■□□□□ 0.18
VRK3-202ENST00000377011 COL5A3P25940 1745 aaPredicted RBP16.2■□□□□ 0.18
VRK3-202ENST00000377011 MCM10Q7L590 875 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 SGIP1Q9BQI5 828 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 KCPQ6ZWJ8 1503 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 GNAT3A8MTJ3 354 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 KCNQ3O43525 872 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 GAS2L2Q8NHY3 880 aa16.19■□□□□ 0.18
VRK3-202ENST00000377011 MSH5O43196 834 aa16.18■□□□□ 0.18
VRK3-202ENST00000377011 CEMIPQ8WUJ3 1361 aa16.17■□□□□ 0.18
VRK3-202ENST00000377011 PHF14O94880 888 aa16.17■□□□□ 0.18
VRK3-202ENST00000377011 SPON1Q9HCB6 807 aa16.17■□□□□ 0.18
VRK3-202ENST00000377011 MSL1Q68DK7 614 aa16.16■□□□□ 0.18
VRK3-202ENST00000377011 CCDC146Q8IYE0 955 aa16.16■□□□□ 0.18
VRK3-202ENST00000377011 THUMPD2Q9BTF0 503 aaKnown RBP16.16■□□□□ 0.18
VRK3-202ENST00000377011 UBR2Q8IWV8 1755 aa16.16■□□□□ 0.18
VRK3-202ENST00000377011 ZNF831Q5JPB2 1677 aa16.15■□□□□ 0.18
VRK3-202ENST00000377011 DNAJC10Q8IXB1 793 aa16.15■□□□□ 0.18
VRK3-202ENST00000377011 MTFR1LQ9H019 292 aa16.15■□□□□ 0.18
VRK3-202ENST00000377011 COL24A1Q17RW2 1714 aa16.15■□□□□ 0.18
VRK3-202ENST00000377011 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.14■□□□□ 0.17
VRK3-202ENST00000377011 GNPATO15228 680 aa16.14■□□□□ 0.17
VRK3-202ENST00000377011 AK7Q96M32 723 aa16.14■□□□□ 0.17
VRK3-202ENST00000377011 ADAMTS8Q9UP79 889 aa16.14■□□□□ 0.17
VRK3-202ENST00000377011 SENP3-EIF4A1A0A087X0R7 540 aa16.13■□□□□ 0.17
VRK3-202ENST00000377011 MIS18AQ9NYP9 233 aa16.13■□□□□ 0.17
VRK3-202ENST00000377011 RRP7AQ9Y3A4 280 aaKnown RBP16.13■□□□□ 0.17
VRK3-202ENST00000377011 PRAMEF22A3QJZ6 481 aa16.12■□□□□ 0.17
VRK3-202ENST00000377011 ZNF496Q96IT1 587 aaPredicted RBP16.12■□□□□ 0.17
VRK3-202ENST00000377011 CICQ96RK0 1608 aaPredicted RBP16.12■□□□□ 0.17
VRK3-202ENST00000377011 INTS5Q6P9B9 1019 aaKnown RBP16.11■□□□□ 0.17
VRK3-202ENST00000377011 CRKLP46109 303 aaKnown RBP16.11■□□□□ 0.17
VRK3-202ENST00000377011 TEFQ10587 303 aa16.11■□□□□ 0.17
VRK3-202ENST00000377011 NFE2L2Q16236 605 aa16.11■□□□□ 0.17
VRK3-202ENST00000377011 B4GALNT3Q6L9W6 998 aa16.11■□□□□ 0.17
VRK3-202ENST00000377011 C4AP0C0L4 1744 aa16.1■□□□□ 0.17
VRK3-202ENST00000377011 ZNF790Q6PG37 636 aa16.1■□□□□ 0.17
VRK3-202ENST00000377011 CYP19A1P11511 503 aaPredicted RBP16.09■□□□□ 0.17
VRK3-202ENST00000377011 CNTNAP4Q9C0A0 1308 aa16.09■□□□□ 0.17
VRK3-202ENST00000377011 ARHGEF1Q92888 912 aaKnown RBP16.08■□□□□ 0.17
VRK3-202ENST00000377011 FHDC1Q9C0D6 1143 aaPredicted RBP16.08■□□□□ 0.17
VRK3-202ENST00000377011 PPP1R1BQ9UD71 204 aaPredicted RBP16.08■□□□□ 0.17
VRK3-202ENST00000377011 BTBD11A6QL63 1104 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms