RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 ANKARQ7Z5J8 1434 aa31.07■■■□□ 2.56
C9orf40-201ENST00000376854 EXOC6BQ9Y2D4 811 aa31.07■■■□□ 2.56
C9orf40-201ENST00000376854 FLIIQ13045 1269 aa31.07■■■□□ 2.56
C9orf40-201ENST00000376854 CCDC30Q5VVM6 783 aa31.06■■■□□ 2.56
C9orf40-201ENST00000376854 RBM33Q96EV2 1170 aaKnown RBP31.06■■■□□ 2.56
C9orf40-201ENST00000376854 HOXC9P31274 260 aa31.06■■■□□ 2.56
C9orf40-201ENST00000376854 GNAT3A8MTJ3 354 aa31.05■■■□□ 2.56
C9orf40-201ENST00000376854 FKBP5Q13451 457 aaPredicted RBP31.05■■■□□ 2.56
C9orf40-201ENST00000376854 CWC22Q9HCG8 908 aaKnown RBP31.05■■■□□ 2.56
C9orf40-201ENST00000376854 MARF1Q9Y4F3 1742 aaKnown RBP31.05■■■□□ 2.56
C9orf40-201ENST00000376854 KLHL40Q2TBA0 621 aa31.04■■■□□ 2.56
C9orf40-201ENST00000376854 DDX49Q9Y6V7 483 aaKnown RBP31.04■■■□□ 2.56
C9orf40-201ENST00000376854 CYP2E1P05181 493 aaPredicted RBP31.04■■■□□ 2.56
C9orf40-201ENST00000376854 ABTB2Q8N961 1025 aa31.04■■■□□ 2.56
C9orf40-201ENST00000376854 GNAI3P08754 354 aa31.03■■■□□ 2.56
C9orf40-201ENST00000376854 LTV1Q96GA3 475 aaPredicted RBP31.03■■■□□ 2.56
C9orf40-201ENST00000376854 TRHP20396 242 aaPredicted RBP31.02■■■□□ 2.56
C9orf40-201ENST00000376854 NECTIN2Q92692 538 aa31.02■■■□□ 2.56
C9orf40-201ENST00000376854 LRRCC1Q9C099 1032 aa31.02■■■□□ 2.56
C9orf40-201ENST00000376854 MCTP1Q6DN14 999 aa31.01■■■□□ 2.55
C9orf40-201ENST00000376854 TSHZ3Q63HK5 1081 aa31.01■■■□□ 2.55
C9orf40-201ENST00000376854 SALL3Q9BXA9 1300 aa31■■■□□ 2.55
C9orf40-201ENST00000376854 PKP1Q13835 747 aa31■■■□□ 2.55
C9orf40-201ENST00000376854 C14orf37Q86TY3 774 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 ZGPATQ8N5A5 531 aaKnown RBP30.99■■■□□ 2.55
C9orf40-201ENST00000376854 LRRC37A3O60309 1634 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 NWD1Q149M9 1564 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 PNMA6EA0A0J9YXQ4 647 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 CLCN1P35523 988 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 ATP8B2P98198 1209 aa30.99■■■□□ 2.55
C9orf40-201ENST00000376854 MX1P20591 662 aa30.97■■■□□ 2.55
C9orf40-201ENST00000376854 IL17REQ8NFR9 667 aa30.97■■■□□ 2.55
C9orf40-201ENST00000376854 MAP3K5Q99683 1374 aa30.96■■■□□ 2.55
C9orf40-201ENST00000376854 IBTKQ9P2D0 1353 aaPredicted RBP30.96■■■□□ 2.55
C9orf40-201ENST00000376854 AK9Q5TCS8 1911 aa30.96■■■□□ 2.55
C9orf40-201ENST00000376854 USHBP1Q8N6Y0 703 aa30.96■■■□□ 2.55
C9orf40-201ENST00000376854 SOS1Q07889 1333 aaPredicted RBP30.95■■■□□ 2.55
C9orf40-201ENST00000376854 FAM208AQ9UK61 1670 aaKnown RBP30.95■■■□□ 2.55
C9orf40-201ENST00000376854 ESYT1Q9BSJ8 1104 aa30.95■■■□□ 2.55
C9orf40-201ENST00000376854 TAF7Q15545 349 aaPredicted RBP30.95■■■□□ 2.54
C9orf40-201ENST00000376854 PHF8Q9UPP1 1060 aa30.94■■■□□ 2.54
C9orf40-201ENST00000376854 LRRFIP2Q9Y608 721 aaKnown RBP30.94■■■□□ 2.54
C9orf40-201ENST00000376854 TRIM44Q96DX7 344 aaPredicted RBP30.93■■■□□ 2.54
C9orf40-201ENST00000376854 LMBRD1Q9NUN5 540 aa30.93■■■□□ 2.54
C9orf40-201ENST00000376854 BABAM1Q9NWV8 329 aa30.92■■■□□ 2.54
C9orf40-201ENST00000376854 NEK4P51957 841 aa30.92■■■□□ 2.54
C9orf40-201ENST00000376854 ESPNB1AK53 854 aa30.91■■■□□ 2.54
C9orf40-201ENST00000376854 RILPL2Q969X0 211 aa30.91■■■□□ 2.54
C9orf40-201ENST00000376854 TRIM6-TRIM34B2RNG4 842 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 ZDHHC9Q9Y397 364 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 USP54Q70EL1 1684 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 NCLP19338 710 aaKnown RBP30.9■■■□□ 2.54
C9orf40-201ENST00000376854 MCCP23508 829 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 ANKLE2Q86XL3 938 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 USP44Q9H0E7 712 aa30.9■■■□□ 2.54
C9orf40-201ENST00000376854 CHMLP26374 656 aa30.89■■■□□ 2.54
C9orf40-201ENST00000376854 SRCIN1Q9C0H9 1055 aa30.89■■■□□ 2.54
C9orf40-201ENST00000376854 STAP2Q9UGK3 403 aa30.89■■■□□ 2.54
C9orf40-201ENST00000376854 NASPP49321 788 aaPredicted RBP30.89■■■□□ 2.53
C9orf40-201ENST00000376854 UBTFL1P0CB47 393 aaPredicted RBP30.88■■■□□ 2.53
C9orf40-201ENST00000376854 CAVIN1Q6NZI2 390 aaKnown RBP30.88■■■□□ 2.53
C9orf40-201ENST00000376854 PXDNLA1KZ92 1463 aa30.88■■■□□ 2.53
C9orf40-201ENST00000376854 CHD2O14647 1828 aaKnown RBP30.88■■■□□ 2.53
C9orf40-201ENST00000376854 ZNF445P59923 1031 aa30.87■■■□□ 2.53
C9orf40-201ENST00000376854 HDGFL1Q5TGJ6 251 aa30.87■■■□□ 2.53
C9orf40-201ENST00000376854 TMX3Q96JJ7 454 aa30.87■■■□□ 2.53
C9orf40-201ENST00000376854 ERBB4Q15303 1308 aa30.86■■■□□ 2.53
C9orf40-201ENST00000376854 MCM2P49736 904 aa30.86■■■□□ 2.53
C9orf40-201ENST00000376854 ANO2Q9NQ90 1003 aa30.86■■■□□ 2.53
C9orf40-201ENST00000376854 PRPF40AO75400 957 aaKnown RBP30.85■■■□□ 2.53
C9orf40-201ENST00000376854 PALD1Q9ULE6 856 aa30.85■■■□□ 2.53
C9orf40-201ENST00000376854 CCDC173Q0VFZ6 552 aa30.84■■■□□ 2.53
C9orf40-201ENST00000376854 ZSCAN23Q3MJ62 389 aa30.84■■■□□ 2.53
C9orf40-201ENST00000376854 PHAXQ9H814 394 aaKnown RBP30.84■■■□□ 2.53
C9orf40-201ENST00000376854 ANAPC15P60006 121 aa30.84■■■□□ 2.53
C9orf40-201ENST00000376854 TUBGCP6Q96RT7 1819 aa30.83■■■□□ 2.53
C9orf40-201ENST00000376854 ZBTB7CA1YPR0 619 aa30.83■■■□□ 2.53
C9orf40-201ENST00000376854 ESCO1Q5FWF5 840 aa30.83■■■□□ 2.53
C9orf40-201ENST00000376854 LTN1O94822 1766 aa30.83■■■□□ 2.53
C9orf40-201ENST00000376854 UNC5CLQ8IV45 518 aa30.82■■■□□ 2.53
C9orf40-201ENST00000376854 AOX1Q06278 1338 aa30.82■■■□□ 2.52
C9orf40-201ENST00000376854 SSH3Q8TE77 659 aa30.82■■■□□ 2.52
C9orf40-201ENST00000376854 ANP32BQ92688 251 aaKnown RBP30.82■■■□□ 2.52
C9orf40-201ENST00000376854 IL1RAPL2Q9NP60 686 aa30.81■■■□□ 2.52
C9orf40-201ENST00000376854 NBPF6Q5VWK0 638 aa30.81■■■□□ 2.52
C9orf40-201ENST00000376854 NBPF4Q96M43 638 aa30.81■■■□□ 2.52
C9orf40-201ENST00000376854 PPP1R9BQ96SB3 815 aa30.81■■■□□ 2.52
C9orf40-201ENST00000376854 CACNA1FO60840 1977 aa30.81■■■□□ 2.52
C9orf40-201ENST00000376854 IP6K1Q92551 441 aa30.8■■■□□ 2.52
C9orf40-201ENST00000376854 N4BP2Q86UW6 1770 aaPredicted RBP30.79■■■□□ 2.52
C9orf40-201ENST00000376854 NFAT5O94916 1531 aa30.79■■■□□ 2.52
C9orf40-201ENST00000376854 PSME1Q06323 249 aa30.79■■■□□ 2.52
C9orf40-201ENST00000376854 CUL4AQ13619 759 aa30.79■■■□□ 2.52
C9orf40-201ENST00000376854 GPT2Q8TD30 523 aa30.79■■■□□ 2.52
C9orf40-201ENST00000376854 PLEKHG5O94827 1062 aa30.79■■■□□ 2.52
C9orf40-201ENST00000376854 PPP1R42Q7Z4L9 355 aa30.78■■■□□ 2.52
C9orf40-201ENST00000376854 NAP1L5Q96NT1 182 aaPredicted RBP30.78■■■□□ 2.52
C9orf40-201ENST00000376854 RAB11FIP3O75154 756 aa30.78■■■□□ 2.52
C9orf40-201ENST00000376854 NUTM1Q86Y26 1132 aa30.78■■■□□ 2.52
C9orf40-201ENST00000376854 SETD1BQ9UPS6 1966 aaKnown RBP30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms