RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PKNOX2Q96KN3 472 aa16.02■□□□□ 0.15
COL4A1-201ENST00000375820 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.02■□□□□ 0.15
COL4A1-201ENST00000375820 CCDC8Q9H0W5 538 aaPredicted RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 RANBP6O60518 1105 aaKnown RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 MAP2K1Q02750 393 aaPredicted RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 SPTY2D1Q68D10 685 aaPredicted RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 CCDC148Q8NFR7 591 aa16.01■□□□□ 0.15
COL4A1-201ENST00000375820 ZFP91Q96JP5 570 aaPredicted RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 CTNNA3Q9UI47 895 aa16.01■□□□□ 0.15
COL4A1-201ENST00000375820 CCDC96Q2M329 555 aa16.01■□□□□ 0.15
COL4A1-201ENST00000375820 CCT2P78371 535 aaKnown RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 ZNF397Q8NF99 534 aaPredicted RBP16.01■□□□□ 0.15
COL4A1-201ENST00000375820 SMTNL1A8MU46 457 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 PAXIP1Q6ZW49 1069 aaPredicted RBP16■□□□□ 0.15
COL4A1-201ENST00000375820 CKAP2LQ8IYA6 745 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 IQCEQ6IPM2 695 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 PPP6R1Q9UPN7 881 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 CASQ1P31415 396 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 TXLNBQ8N3L3 684 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 F6X3S4 739 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 MCM4P33991 863 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 RTEL1-TNFRSF6BF6WH68 1400 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 POLR3GO15318 223 aaPredicted RBP16■□□□□ 0.15
COL4A1-201ENST00000375820 CACNA2D4Q7Z3S7 1137 aa16■□□□□ 0.15
COL4A1-201ENST00000375820 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
COL4A1-201ENST00000375820 UBXN4Q92575 508 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 ZBTB9Q96C00 473 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 SPA17Q15506 151 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 DESP17661 470 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 URI1O94763 535 aaPredicted RBP15.99■□□□□ 0.15
COL4A1-201ENST00000375820 TICAM2Q86XR7 235 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 GDPD2Q9HCC8 539 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 BIN1O00499 593 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 TTLL12Q14166 644 aaPredicted RBP15.99■□□□□ 0.15
COL4A1-201ENST00000375820 NBPF8Q3BBV2 869 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 TMCO3Q6UWJ1 677 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 GAPVD1Q14C86 1478 aa15.99■□□□□ 0.15
COL4A1-201ENST00000375820 PDCL2Q8N4E4 241 aa15.98■□□□□ 0.15
COL4A1-201ENST00000375820 ZSCAN31Q96LW9 406 aaPredicted RBP15.98■□□□□ 0.15
COL4A1-201ENST00000375820 GSTTP1A0A1W2PQM5 241 aa15.98■□□□□ 0.15
COL4A1-201ENST00000375820 SERPINA10Q9UK55 444 aa15.98■□□□□ 0.15
COL4A1-201ENST00000375820 GNAT3A8MTJ3 354 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 CRACR2AQ9BSW2 395 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 AQRO60306 1485 aaKnown RBP eCLIP15.97■□□□□ 0.15
COL4A1-201ENST00000375820 DUSP27Q5VZP5 1158 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 WASF1Q92558 559 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 VAT1LQ9HCJ6 419 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 MPRIPQ6WCQ1 1025 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 MMRN2Q9H8L6 949 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 CEP131Q9UPN4 1083 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 DZIP1Q86YF9 867 aaKnown RBP15.97■□□□□ 0.15
COL4A1-201ENST00000375820 NUP88Q99567 741 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-201ENST00000375820 TMOD2Q9NZR1 351 aa15.97■□□□□ 0.15
COL4A1-201ENST00000375820 IFIT1P09914 478 aaKnown RBP15.96■□□□□ 0.15
COL4A1-201ENST00000375820 JARID2Q92833 1246 aaPredicted RBP15.96■□□□□ 0.15
COL4A1-201ENST00000375820 CUX1P39880 1505 aa15.96■□□□□ 0.15
COL4A1-201ENST00000375820 KIF4BQ2VIQ3 1234 aa15.96■□□□□ 0.15
COL4A1-201ENST00000375820 TDRD12Q587J7 1177 aaKnown RBP15.96■□□□□ 0.15
COL4A1-201ENST00000375820 NAPBQ9H115 298 aa15.96■□□□□ 0.15
COL4A1-201ENST00000375820 NCOA2Q15596 1464 aa15.96■□□□□ 0.15
COL4A1-201ENST00000375820 ESPNB1AK53 854 aa15.96■□□□□ 0.14
COL4A1-201ENST00000375820 ADAMTS2O95450 1211 aa15.96■□□□□ 0.14
COL4A1-201ENST00000375820 MX1P20591 662 aa15.96■□□□□ 0.14
COL4A1-201ENST00000375820 IFFO1Q0D2I5 559 aa15.96■□□□□ 0.14
COL4A1-201ENST00000375820 PTPN14Q15678 1187 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 WDR63Q8IWG1 891 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 USP8P40818 1118 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 LUZP1Q86V48 1076 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 SPDYE4A6NLX3 237 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 POTEJP0CG39 1038 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 GPTP24298 496 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 KRT32Q14532 448 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 TSHZ3Q63HK5 1081 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 FGD5Q6ZNL6 1462 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 PPP1R12BO60237 982 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-201ENST00000375820 CAVIN4Q5BKX8 364 aa15.95■□□□□ 0.14
COL4A1-201ENST00000375820 RNF187Q5TA31 235 aaPredicted RBP15.95■□□□□ 0.14
COL4A1-201ENST00000375820 ZPR1O75312 459 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 SFPQP23246 707 aaKnown RBP eCLIP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 FKBP15Q5T1M5 1219 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 C20orf194Q5TEA3 1177 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 CLIP2Q9UDT6 1046 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 TSG101Q99816 390 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 PRKCSHP14314 528 aaPredicted RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 WAPLQ7Z5K2 1190 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 C8orf76Q96K31 380 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 TOP1P11387 765 aaKnown RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 NF2P35240 595 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 CCDC91Q7Z6B0 441 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 ECM2O94769 699 aaPredicted RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 STARD3NLO95772 234 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 SSFA2P28290 1259 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 PRPF4BQ13523 1007 aaKnown RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 TNIP1Q15025 636 aa15.94■□□□□ 0.14
COL4A1-201ENST00000375820 ZNF692Q9BU19 519 aaPredicted RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 SRRTQ9BXP5 876 aaKnown RBP15.94■□□□□ 0.14
COL4A1-201ENST00000375820 RBM25P49756 843 aaKnown RBP15.93■□□□□ 0.14
COL4A1-201ENST00000375820 TFIP11Q9UBB9 837 aaKnown RBP15.93■□□□□ 0.14
COL4A1-201ENST00000375820 TMPOP42166 694 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms